BAC Information

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BAC

Clone NameB6Ng01-169E13
Chromosome17 (Build37)
Map Location 90,407,528 - 90,544,623
singlet/doubletdoublet
Overlap geneNrxn1
Upstream geneFshr, LOC100043904, LOC100043906
Downstream geneEG668871, LOC668872
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169E13.bB6Ng01-169E13.g
ACCDH960303DH960304
length1,176806
definitionDH960303|Mus musculus domesticus DNA, BAC clone: B6Ng01-169E13, 5' end.DH960304|Mus musculus domesticus DNA, BAC clone: B6Ng01-169E13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,543,434 - 90,544,623)(90,407,528 - 90,408,333)
sequence
gaattcactgagtttgacacaagtggtttctgtactgtgaaaatcactct
gcagaaaaggtttgcatttgcatttcaaatgactcctctccatattcatg
ctacagatcaggagtattctgtatccctataactaatgtagtcttcacct
tttagcaccctctgacatccgaagaacatgcccattctggagcccaagtc
aagtattttactcacacttgcttagactccccaaagagcttatttcttgg
ctagtattggcattgtactcgcatagccccagagaatcatggtgtcctct
tggtttgacaaagcttggcaataaacatttgaactcaaaggccagtcacc
aaaacgctaaatgactaggtagttgataagggctgagttctttgcatcat
tttattaccattcatttctgactgctggaggtagatgatgtagcaagtct
gacaatagccttcatgctccctgatattgtatccttaatgaaatctcaga
agaaatggccttatgtttctgacttcataaccctgtactcaccaatgaag
aaaacacaaaatgaaaagccaggtatagttttatctcagtatcctatttc
aatttgttgcagaggtaaggactggaaacattacagggatattggtatat
tgctagaagtcactgtttctattaggcatgctccagcattccagattttc
agattttttttaacttcagaaggatttttgtataaattatgatagttatt
taaaaaaatactgcttgcttgagagagatcagcaacaagtgaaaaagcac
agggtgcagctcagcatcattttgctcccagtctcaaggtactgagttct
gtccctaacactgaaaataaaacaaaacaaaatggagaaaaaatattcgt
tttattggggttcatattataactctctctacaataaaggatattaatta
aaatgactttacacattatgttttaaaataactataaattcagataagaa
aaacaatgaatacaagagttgcacaatattgaaagcatttattattagta
ggaggaaaacctcatcgacttatcctctctttaatccacccttctgtaat
aaaagtggtcaattctactttgctagcaacagtagggtcccttctgtgtc
ctaatattagcttctctctgtcttct
gaattctcagcactccagaagtcagagaaacctgaggagaaaaagaggct
ttctccttggtttgaaagtagctaatgcctgaattttccttcgtaaatga
ggatatgtgattaagaggaaaggcagcatgacttcagaagaagaaaaggg
catcagcttcagggactcagataagcatagcccagagctggctaacttct
ccgacctgagttctgcagtcccgttcagcctgtgatcatttcctttaggg
agtcaaaaaggtcccaggaggaatcatgggtaaaagaacataaccctctg
atttctaaaatgaaagtaacatgaacaaggggcagggtctgctgggatcc
tcatctatcagttgttaagaaaatagtttggcagagaatgtgttcttggt
gtttcctgtattttgttatccacagtattttatcacagttctgcacatac
catttggatgtaatactgcatcaggaatggaagagaaggaaactttgtcc
agttggtcattcatttatttaagggtagactgaggtgaggcactgaacta
agaaagacaaaggagaaagtgggtacttgaaagagggagagatagaagaa
aatcacagattaacagactgaaaaaaaagattgaaaaagaaaacaaaact
acagggagagtgagatggaatctcatccttattcttacacagtgtagaca
gggagtaaatattcagccaaactcataaggcaagacagaggaaataaaag
gaaggaagatcatggaaagaggagatggaggagaagggagagaggaagag
gaagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_90543434_90544623
seq2: B6Ng01-169E13.b_46_1221 (reverse)

seq1  AGAAGGAACAGAGAGAGCACTAATA-TAGGACACAGAAGGGA-CCTACTG  48
      |||||  |||||||||   |||||| |||||||||||||||| |||||||
seq2  AGAAG--ACAGAGAGA-AGCTAATATTAGGACACAGAAGGGACCCTACTG  47

seq1  TGTGCTAAGCAAGTAGAATGGAAACAACTTTTATTTACAGGAGGGTGGAT  98
      | |||||   ||||||||| |  || ||||||| |||||| |||||||||
seq2  T-TGCTAGCAAAGTAGAATTG--ACCACTTTTA-TTACAGAAGGGTGGAT  93

seq1  TAAAGAGAGGATAAGTCGATGAGGTTGTTCTCCTACTAATAATAAATGCT  148
      |||||||||||||||||||||||||| | |||||||||||||||||||||
seq2  TAAAGAGAGGATAAGTCGATGAGGTTTTCCTCCTACTAATAATAAATGCT  143

seq1  TTCAAATATTGTGCAACTCTTGTATTCATTTGTTTGTCTTTATCTGAATT  198
      ||| |||||||||||||||||||||||| |||||| || |||||||||||
seq2  TTC-AATATTGTGCAACTCTTGTATTCA-TTGTTTTTC-TTATCTGAATT  190

seq1  TATAGTTATTTTTAAAAACATAATGTTGTAAAGTCATTTTAATTAATATT  248
      ||||||||||||  ||||||||||| |||||||||||||||||||||| |
seq2  TATAGTTATTTT--AAAACATAATG-TGTAAAGTCATTTTAATTAATA-T  236

seq1  CCTTTATTGTAGAGAGAGTTATAATATGAACCCCAATAAAAACGAATATT  298
      ||||||||||||||||||||||||||||||||||||| |||||||||| |
seq2  CCTTTATTGTAGAGAGAGTTATAATATGAACCCCAAT-AAAACGAATA-T  284

seq1  TTTTTCTCCATTTTGTTTTGTTTTATTTTCAGTGTTAGGGACAGAACTCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTCCATTTTGTTTTGTTTTATTTTCAGTGTTAGGGACAGAACTCA  334

seq1  GTACCTTGAGACTGGGAGCAAAATGATGCTGAGCTGCACCCTGTGCTTTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTTGAGACTGGGAGCAAAATGATGCTGAGCTGCACCCTGTGCTTTT  384

seq1  TCACTTGTTGCTGATCTCTCTCAAGCAAGCAGTATTTTTTTAAATAACTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTGTTGCTGATCTCTCTCAAGCAAGCAGTATTTTTTTAAATAACTA  434

seq1  TCATAATTTATACAAAAATCCTTCTGAAGTTAAAAAAAATCTGAAAATCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAATTTATACAAAAATCCTTCTGAAGTTAAAAAAAATCTGAAAATCT  484

seq1  GGAATGCTGGAGCATGCCTAATAGAAACAGTGACTTCTAGCAATATACCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGCTGGAGCATGCCTAATAGAAACAGTGACTTCTAGCAATATACCA  534

seq1  ATATCCCTGTAATGTTTCCAGTCCTTACCTCTGCAACAAATTGAAATAGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCCTGTAATGTTTCCAGTCCTTACCTCTGCAACAAATTGAAATAGG  584

seq1  ATACTGAGATAAAACTATACCTGGCTTTTCATTTTGTGTTTTCTTCATTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGAGATAAAACTATACCTGGCTTTTCATTTTGTGTTTTCTTCATTG  634

seq1  GTGAGTACAGGGTTATGAAGTCAGAAACATAAGGCCATTTCTTCTGAGAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTACAGGGTTATGAAGTCAGAAACATAAGGCCATTTCTTCTGAGAT  684

seq1  TTCATTAAGGATACAATATCAGGGAGCATGAAGGCTATTGTCAGACTTGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTAAGGATACAATATCAGGGAGCATGAAGGCTATTGTCAGACTTGC  734

seq1  TACATCATCTACCTCCAGCAGTCAGAAATGAATGGTAATAAAATGATGCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCATCTACCTCCAGCAGTCAGAAATGAATGGTAATAAAATGATGCA  784

seq1  AAGAACTCAGCCCTTATCAACTACCTAGTCATTTAGCGTTTTGGTGACTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTCAGCCCTTATCAACTACCTAGTCATTTAGCGTTTTGGTGACTG  834

seq1  GCCTTTGAGTTCAAATGTTTATTGCCAAGCTTTGTCAAACCAAGAGGACA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTGAGTTCAAATGTTTATTGCCAAGCTTTGTCAAACCAAGAGGACA  884

seq1  CCATGATTCTCTGGGGCTATGCGAGTACAATGCCAATACTAGCCAAGAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGATTCTCTGGGGCTATGCGAGTACAATGCCAATACTAGCCAAGAAA  934

seq1  TAAGCTCTTTGGGGAGTCTAAGCAAGTGTGAGTAAAATACTTGACTTGGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTCTTTGGGGAGTCTAAGCAAGTGTGAGTAAAATACTTGACTTGGG  984

seq1  CTCCAGAATGGGCATGTTCTTCGGATGTCAGAGGGTGCTAAAAGGTGAAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGAATGGGCATGTTCTTCGGATGTCAGAGGGTGCTAAAAGGTGAAG  1034

seq1  ACTACATTAGTTATAGGGATACAGAATACTCCTGATCTGTAGCATGAATA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACATTAGTTATAGGGATACAGAATACTCCTGATCTGTAGCATGAATA  1084

seq1  TGGAGAGGAGTCATTTGAAATGCAAATGCAAACCTTTTCTGCAGAGTGAT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGGAGTCATTTGAAATGCAAATGCAAACCTTTTCTGCAGAGTGAT  1134

seq1  TTTCACAGTACAGAAACCACTTGTGTCAAACTCAGTGAATTC  1190
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACAGTACAGAAACCACTTGTGTCAAACTCAGTGAATTC  1176

seq1: chr17_90407528_90408333
seq2: B6Ng01-169E13.g_67_872

seq1  GAATTCTCAGCACTCCAGAAGTCAGAGAAACCTGAGGAGAAAAAGAGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGCACTCCAGAAGTCAGAGAAACCTGAGGAGAAAAAGAGGCT  50

seq1  TTCTCCTTGGTTTGAAAGTAGCTAATGCCTGAATTTTCCTTCGTAAATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTTGGTTTGAAAGTAGCTAATGCCTGAATTTTCCTTCGTAAATGA  100

seq1  GGATATGTGATTAAGAGGAAAGGCAGCATGACTTCAGAAGAAGAAAAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATGTGATTAAGAGGAAAGGCAGCATGACTTCAGAAGAAGAAAAGGG  150

seq1  CATCAGCTTCAGGGACTCAGATAAGCATAGCCCAGAGCTGGCTAACTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGCTTCAGGGACTCAGATAAGCATAGCCCAGAGCTGGCTAACTTCT  200

seq1  CCGACCTGAGTTCTGCAGTCCCGTTCAGCCTGTGATCATTTCCTTTAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGACCTGAGTTCTGCAGTCCCGTTCAGCCTGTGATCATTTCCTTTAGGG  250

seq1  AGTCAAAAAGGTCCCAGGAGGAATCATGGGTAAAAGAACATAACCCTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAAAAGGTCCCAGGAGGAATCATGGGTAAAAGAACATAACCCTCTG  300

seq1  ATTTCTAAAATGAAAGTAACATGAACAAGGGGCAGGGTCTGCTGGGATCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTAAAATGAAAGTAACATGAACAAGGGGCAGGGTCTGCTGGGATCC  350

seq1  TCATCTATCAGTTGTTAAGAAAATAGTTTGGCAGAGAATGTGTTCTTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTATCAGTTGTTAAGAAAATAGTTTGGCAGAGAATGTGTTCTTGGT  400

seq1  GTTTCCTGTATTTTGTTATCCACAGTATTTTATCACAGTTCTGCACATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTGTATTTTGTTATCCACAGTATTTTATCACAGTTCTGCACATAC  450

seq1  CATTTGGATGTAATACTGCATCAGGAATGGAAGAGAAGGAAACTTTGTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGGATGTAATACTGCATCAGGAATGGAAGAGAAGGAAACTTTGTCC  500

seq1  AGTTGGTCATTCATTTATTTAAGGGTAGACTGAGGTGAGGCACTGAACTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGTCATTCATTTATTTAAGGGTAGACTGAGGTGAGGCACTGAACTA  550

seq1  AGAAAGACAAAGGAGAAAGTGGGTACTTGAAAGAGGGAGAGATAGAAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGACAAAGGAGAAAGTGGGTACTTGAAAGAGGGAGAGATAGAAGAA  600

seq1  AATCACAGATTAACAGACTGAAAAAAAAGATTGAAAAAGAAAACAAAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACAGATTAACAGACTGAAAAAAAAGATTGAAAAAGAAAACAAAACT  650

seq1  ACAGGGAGAGTGAGATGGAATCTCATCCTTATTCTTACACAGTGTAGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGAGAGTGAGATGGAATCTCATCCTTATTCTTACACAGTGTAGACA  700

seq1  GGGAGTAAATATTCAGCCAAACTCATAAGGCAAGACAGAGGAAATAAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTAAATATTCAGCCAAACTCATAAGGCAAGACAGAGGAAATAAAAG  750

seq1  GAAGGAAGATCATGGAAAGAGGAGATGGAGGAGAAGGGAGAGAGGAAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAGATCATGGAAAGAGGAGATGGAGGAGAAGGGAGAGAGGAAGAG  800

seq1  GAAGAA  806
      ||||||
seq2  GAAGAA  806