BAC Information

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BAC

Clone NameB6Ng01-169H16
Chromosome6 (Build37)17 (Build37)
Map Location 18,835,442 - 18,835,96882,001,591 - 82,002,625
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169H16.bB6Ng01-169H16.g
ACCDH960448DH960449
length9601,028
definitionDH960448|Mus musculus domesticus DNA, BAC clone: B6Ng01-169H16, 5' end.DH960449|Mus musculus domesticus DNA, BAC clone: B6Ng01-169H16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,442 - 18,835,968)(82,001,591 - 82,002,625)
sequence
gaattctttgttcagttctgagccccattttttaagggggttatttgatt
ttctgaggtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccagtctgttggtggtct
ttttgtcttatagacagtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttggctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tccacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctcggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
aatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttggtcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcaggacttgaagttttatcataca
gatctttcacttccttcgtagagtcacgccgagatattttatatatttgt
ggctatgaga
gaattccaataactctagagtagggaaagcaagataaagggagacatgct
aattttaagttttttttttcttcttgccaccaagtgtctagaaaaaattc
actgttctcctgctaaatctaagttgttgaaataaggtcaccgagtggtg
gattagcccaatttgaggtccctgcctttctctcctatggtggttatttg
aacacttgttagcattgatgctatagtgcatacacgaatagaacagtctg
gcatgtcacttcgattttcctcagcagtttttataaatgtcaccatggtt
aaatcgttgagcctttagctggaaccaatttaaggagtcattagaggata
agcttggcgaggatgtccatcacgagaagaagagaagtaaggggtgatct
tagaaacacagaacaactcagaattgaccgctctatccgatatcttcatg
agattcttgaaaggaattatgacacaaaaattaaagtgatttgagatacc
aataaactcatgtgtggtatttttagtcctggaaaatatggttgagatag
agcattttaatgcctaatagctttataaatcctcggaaacctagacaaga
caacagattcaacacagaagaacatcacttaaattatgggaaagtctcct
ttccacgcgaatcactgtacaggcagagttggcaatgctaaagctgaatc
agaaatcctcggggccccaggaacttcccaggtgctttctttgagcatct
ctccaatggctaggattctcagatgcatttttccacccttcccttcacct
tgaacttttgtgttagcctgtctcacctagaattgttttgtgtgtgtgtt
ttaagtaactgctgcttcctgtgcggtgccaacaccacctaagctgagtc
ttgcacaattttccgtgaaatcgtatttcttagagatgttattcttatca
aatggagttgggcttcctgctggaaaggtacttgactcaaatgatattga
aaaaaaaccctattatttacagctatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835442_18835968
seq2: B6Ng01-169H16.b_50_577 (reverse)

seq1  CCAGAGATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGC  50
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGC  50

seq1  TAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGC  100
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGC  100

seq1  ACAACTGGTTGTTATCTTGTAGAAGAATGTGAATCGATCCATACTTATCT  150
      |||||||||||||||| |||||||||||| ||||||||||||||||||||
seq2  ACAACTGGTTGTTATCATGTAGAAGAATGCGAATCGATCCATACTTATCT  150

seq1  CCATGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACC  200
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACC  200

seq1  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  250

seq1  TGGGCAGAGGGGAAAAGTTCCTGAACAGAACAGCAATGGC-TGTGCTGTG  299
      |||||| ||||||||| ||||||||||||||||||||||| |||||||| 
seq2  TGGGCACAGGGGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTA  300

seq1  AGGTAGAGAATCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAA  349
      || | |||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAA  350

seq1  GGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAA  399
      |||||||||||| ||| ||||||||||||||||||||||||| |||||||
seq2  GGCAAAAGACACTGTCTATAAGACAAAAAGACCACCAACAGACTGGGAAA  400

seq1  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  450

seq1  AAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAATAA  499
      ||||||||||||||||||||| |||||||||||||||||||| |||| ||
seq2  AAAGAACTCAAGAAGGTGGACCTCAGAAAATCAAATAACCCCCTTAAAAA  500

seq1  ATGGGGCTCAGAACTGAACAAAGAATTC  527
      ||||||||||||||||||||||||||||
seq2  ATGGGGCTCAGAACTGAACAAAGAATTC  528

seq1: chr17_82001591_82002625
seq2: B6Ng01-169H16.g_68_1095

seq1  GAATTCCAATAACTCTAGAGTAGGGAAAGCAAGATAAAGGGAGACATGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATAACTCTAGAGTAGGGAAAGCAAGATAAAGGGAGACATGCT  50

seq1  AATTTTAAGTTTTTTTTTTCTTCTTGCCACCAAGTGTCTAGAAAAAATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAAGTTTTTTTTTTCTTCTTGCCACCAAGTGTCTAGAAAAAATTC  100

seq1  ACTGTTCTCCTGCTAAATCTAAGTTGTTGAAATAAGGTCACCGAGTGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTCTCCTGCTAAATCTAAGTTGTTGAAATAAGGTCACCGAGTGGTG  150

seq1  GATTAGCCCAATTTGAGGTCCCTGCCTTTCTCTCCTATGGTGGTTATTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGCCCAATTTGAGGTCCCTGCCTTTCTCTCCTATGGTGGTTATTTG  200

seq1  AACACTTGTTAGCATTGATGCTATAGTGCATACACGAATAGAACAGTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTGTTAGCATTGATGCTATAGTGCATACACGAATAGAACAGTCTG  250

seq1  GCATGTCACTTCGATTTTCCTCAGCAGTTTTTATAAATGTCACCATGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTCACTTCGATTTTCCTCAGCAGTTTTTATAAATGTCACCATGGTT  300

seq1  AAATCGTTGAGCCTTTAGCTGGAACCAATTTAAGGAGTCATTAGAGGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCGTTGAGCCTTTAGCTGGAACCAATTTAAGGAGTCATTAGAGGATA  350

seq1  AGCTTGGCGAGGATGTCCATCACGAGAAGAAGAGAAGTAAGGGGTGATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGGCGAGGATGTCCATCACGAGAAGAAGAGAAGTAAGGGGTGATCT  400

seq1  TAGAAACACAGAACAACTCAGAATTGACCGCTCTATCCGATATCTTCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAACACAGAACAACTCAGAATTGACCGCTCTATCCGATATCTTCATG  450

seq1  AGATTCTTGAAAGGAATTATGACACAAAAATTAAAGTGATTTGAGATACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCTTGAAAGGAATTATGACACAAAAATTAAAGTGATTTGAGATACC  500

seq1  AATAAACTCATGTGTGGTATTTTTAGTCCTGGAAAATATGGTTGAGATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACTCATGTGTGGTATTTTTAGTCCTGGAAAATATGGTTGAGATAG  550

seq1  AGCATTTTAATGCCTAATAGCTTTATAAATCCTCGGAAACCTAGACAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTTAATGCCTAATAGCTTTATAAATCCTCGGAAACCTAGACAAGA  600

seq1  CAACAGATTCAACACAGAAGAACATCACTTAAATTATGGGAAAGTCTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGATTCAACACAGAAGAACATCACTTAAATTATGGGAAAGTCTCCT  650

seq1  TTCCACGCGAATCACTGTACAGGCAGAGTTGGCAATGCTAAAGCTGAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACGCGAATCACTGTACAGGCAGAGTTGGCAATGCTAAAGCTGAATC  700

seq1  AGAAATCCTCGGGGCCCCAGGAACTTCCCAGGTGCTTTCTTTGAGCATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCCTCGGGGCCCCAGGAACTTCCCAGGTGCTTTCTTTGAGCATCT  750

seq1  CTCCAATGGCTAGGATTCTCAGATGCATTTTTCCACCCTTCCCTTCACCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAATGGCTAGGATTCTCAGATGCATTTTTCCACCCTTCCCTTCACCT  800

seq1  TGAACTTTTGTGTTAGCCTGTCTCACCTAGAATTGTTTTGTGTGTGTGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTTTGTGTTAGCCTGTCTCACCTAGAATTGTTTTGTGTGTGTGTT  850

seq1  TTAAGTAACTGCTGCTTCCTGTGCGGTGCCAACACCACCTAAGCTGAGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTAACTGCTGCTTCCTGTGCGGTGCCAACACCACCTAAGCTGAGTC  900

seq1  TTGCACAATTTTCCGGTGAAAATCGTATTTCTTAGAGATGTTATTCTTAT  950
      |||||||||||||| ||| |||||||||||||||||||||||||||||||
seq2  TTGCACAATTTTCC-GTG-AAATCGTATTTCTTAGAGATGTTATTCTTAT  948

seq1  CAAATGGAGTTGGGCTTCCTGCTGGAAAGGTACTTGACTCAAATGATAAT  1000
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CAAATGGAGTTGGGCTTCCTGCTGGAAAGGTACTTGACTCAAATGATATT  998

seq1  GAAAAAAAAAACCTATTTAATTTTACAAGCTATAT  1035
      | |||||||| ||||||    ||||| ||||||||
seq2  G-AAAAAAAACCCTATT---ATTTAC-AGCTATAT  1028