BAC Information

Click to search

BAC

Clone NameB6Ng01-170C03
Chromosome17 (Build37)
Map Location 37,682,577 - 37,683,827
singlet/doubletsinglet
Overlap genenone
Upstream geneH2-M11, LOC667896, H2-M9, LOC620340, H2-M1, LOC667912, LOC100043158, LOC667915, H2-M10.5, H2-M10.6, Trim26, Trim15, Trim10, LOC100043164, Trim40, Trim31, Ppp1r11, Znrd1, 1700022C21Rik, H2-M6-ps, 2410137M14Rik, H2-M4-ps, D130003B22Rik, Zfp57, Mog, Gabbr1, Olfr90, Olfr91, Olfr92, EG224763, LOC667973, Olfr93, Olfr753-ps1, LOC630355, Ubd, Olfr94, Olfr95, Olfr96, Olfr97, Olfr754-ps1, Olfr98, H2-M3, Olfr755-ps1, Olfr99, Olfr756-ps1, Olfr101, Olfr102, Olfr103, Olfr104, GA_x5J8B7W5KGR-1115818-1115257, Olfr105, Olfr758-ps1, Olfr106, Olfr107, Olfr759-ps1, Olfr108, Olfr760-ps1, Olfr109, H2-M2, Olfr110, Olfr111
Downstream geneOlfr112, Olfr113, Olfr114, Olfr115, Olfr116, Olfr117, Olfr118, Olfr119, Scocp, Olfr120, Olfr1558-ps1, Olfr121, Olfr122, Olfr123, Olfr124, Olfr125, LOC672822, Olfr126, Olfr127, Olfr128, Ppia-ps17_697.1, Olfr761, Olfr1552-ps1, LOC100043265, Olfr129, Olfr130, Olfr131, Olfr132, Olfr133, Olfr134, Olfr135, Olfr138, Olfr137, Olfr762-ps1, Olfr136, LOC626985
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170C03.bB6Ng01-170C03.g
ACCDH960925DH960926
length1,2121,155
definitionDH960925|Mus musculus domesticus DNA, BAC clone: B6Ng01-170C03, 5' end.DH960926|Mus musculus domesticus DNA, BAC clone: B6Ng01-170C03, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctgtagtggagttaagttgagctctgagtttaaatgtttctgtt
aatgagaaaaccatcatcattgtccttttctcaaataacttctatatcct
ggaccagactattacttttgtaggttattcagagagatgatacatgtttt
taggcaggattaacctaataaggtagaccaagttcataattataatgcat
atgtataagaatgtttatagatttaaacaatgttgggagccattaaggca
acgctattgtcctaatctctgaattgggcctctcccccccctccccccga
gaagaaaagagggtcaaaagcgggccacgggacccacagctccaagaaag
tcagcgccggatgtctgaccgacctcaagatgtaccctgataccaccaag
ttcctgcttccccttgtagtcgccaaaagaaaaatttccgctgccccatc
cctcctgttgagaagtacttcctctctttctgctgccccatccctcctgc
tgaggtgcatatcctctgccccattcctcctgctgaaaggcacttcccct
tttgcttgtgtatttaaaccttgggcctggctaatacattttggggtctt
gatacaacttcagaacggtttccgcgtcgttactcgtacaagaccctcgt
ctctctctaccccccatttggttattaggaggaggtcccctcgagatcct
cgaataactggacctgctggacgggtcaaaacaacattataggtgcacca
aaatgtataaataagtttacatcatctatctgtacttttaaagtagttca
aaaagaaattatgggtgattgagtaacaaatattagaaataatgctgtga
gttcatagaaaataaaactataacaacaataaactgtaggaaagaaaaca
tgtcacaatgtaggactgagacataattcactccctcagagtgatactga
attattattgtacttgaatggtatctatacttgaattagatcttaaaaca
tgaccattaataccgattatgaactgataaggatttggcaaaggagacag
aactctgggccacacatgtgagaaaatactttgattaagttatgaggtgg
aagaccaccctaaagtggggcagtactttcctggtgtctggactgagaac
agactgaggtgcagattcacaattctgtacattgcaagtccaagttccac
caggattatgaa
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccagaggatccagcaatacctctcctgggc
atacatccagaagatgtcccaacgggtgagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctatttaaaagaatgaatttatggaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctcttagaattgggaac
aaaacacccatggaaggagttacagagacaaagtttggagctgagatgaa
aggatggaccatgtagagactgccatatccagggatccaccccataatca
gcatccaaatgctgacaccattgcatacactagcaagattttatcaaagg
acccagatgtagctgtctcttgtgagactatgccggggcctagcaaacac
agaagtggatgctcacagtcagctaatggatggatcacagggctcccaat
ggaggagctagagaaagtacccaaggagttaaagggtctgcaacctatag
gtgaactacattatggactaaccagtaacctcggagctctgactcttagc
tgatatgtttccaagatggcctaatgcatacactgcaaggaagccatgaa
ccgcacttatgctcgtcagggaacgccaggcaaaaagaatggtggtatgg
aagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_37682577_37683827
seq2: B6Ng01-170C03.b_44_1255 (reverse)

seq1  TTCATGAAATCCTGGTGGTGGAACTTTGGAGCATTTGGGCACATTGTATC  50
      |||||  |||||   |||||||||||    | | |||    || |||| |
seq2  TTCAT--AATCC---TGGTGGAACTT----GGACTTG----CAATGTA-C  36

seq1  AGAGAGTGATGAAATCTTGTGCCACCTCAGTTCCTTGCTTCTCAGGGTCC  100
      ||| | || || |||||     |||||||||  ||   ||||||  ||||
seq2  AGA-ATTG-TG-AATCT----GCACCTCAGT--CT--GTTCTCA--GTCC  73

seq1  AGGACCCAAACTCAGGGAATAGTACTG-CCCACTTTAGGGTGGGTCTTCT  149
      ||       || |  |||| ||||||| ||||||||||||| ||||||| 
seq2  AG-------ACACCAGGAA-AGTACTGCCCCACTTTAGGGT-GGTCTTC-  113

seq1  CACCTCAATTAACTTAATCAAAGTAATTTCTCACATGTGT-GCCCAGAGT  198
      |||||||  |||||||||||||||| |||||||||||||| |||||||||
seq2  CACCTCA--TAACTTAATCAAAGTATTTTCTCACATGTGTGGCCCAGAGT  161

seq1  CCTGTCTCCTTTGCCAAATCC-TATCAAGTTCATAATCGGTATTAATGGT  247
       |||||||||||||||||||| |||| |||||||||||||||||||||||
seq2  TCTGTCTCCTTTGCCAAATCCTTATC-AGTTCATAATCGGTATTAATGGT  210

seq1  CATGTTTTAAGATCTAATTCAAGTATAGATAACCATTCAAGTACAATAAT  297
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CATGTTTTAAGATCTAATTCAAGTATAGAT-ACCATTCAAGTACAATAAT  259

seq1  AATTCAGTATCACTCTGAAGAATTAAAATTATGTCTCAGTCCTACATTGT  347
      |||||||||||||||||| | | |  ||||||||||||||||||||||||
seq2  AATTCAGTATCACTCTGAGGGAGT-GAATTATGTCTCAGTCCTACATTGT  308

seq1  GACATGTTTTCTTTCCTACAGTTTATTGTTGTTATAGTTTTATTTTCTAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGTTTTCTTTCCTACAGTTTATTGTTGTTATAGTTTTATTTTCTAT  358

seq1  GAACTCACAGCATTATTTCTAATATTTGTTACTCAATCACCCATAATTTC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCACAGCATTATTTCTAATATTTGTTACTCAATCACCCATAATTTC  408

seq1  TTTTTGAACTACTTTAAAAGTACAGATAGATGATGTAAACTTATTTATAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGAACTACTTTAAAAGTACAGATAGATGATGTAAACTTATTTATAC  458

seq1  ATTTTGGTGCACCTATAATGTTGTTTTGACCCGTCCAGCAGGTCCAGTTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGTGCACCTATAATGTTGTTTTGACCCGTCCAGCAGGTCCAGTTA  508

seq1  TTCGAGGATCTCGAGGGGACCTCCTCCTAATAACCAAATGGGGGGTAGAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAGGATCTCGAGGGGACCTCCTCCTAATAACCAAATGGGGGGTAGAG  558

seq1  AGAGACGAGGGTCTTGTACGAGTAACGACGCGGAAACCGTTCTGAAGTTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACGAGGGTCTTGTACGAGTAACGACGCGGAAACCGTTCTGAAGTTG  608

seq1  TATCAAGACCCCAAAATGTATTAGCCAGGCCCAAGGTTTAAATACACAAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAGACCCCAAAATGTATTAGCCAGGCCCAAGGTTTAAATACACAAG  658

seq1  CAAAAGGGGAAGTGCCTTTCAGCAGGAGGAATGGGGCAGAGGATATGCAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGGGAAGTGCCTTTCAGCAGGAGGAATGGGGCAGAGGATATGCAC  708

seq1  CTCAGCAGGAGGGATGGGGCAGCAGAAAGAGAGGAAGTACTTCTCAACAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCAGGAGGGATGGGGCAGCAGAAAGAGAGGAAGTACTTCTCAACAG  758

seq1  GAGGGATGGGGCAGCGGAAATTTTTCTTTTGGCGACTACAAGGGGAAGCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGATGGGGCAGCGGAAATTTTTCTTTTGGCGACTACAAGGGGAAGCA  808

seq1  GGAACTTGGTGGTATCAGGGTACATCTTGAGGTCGGTCAGACATCCGGCG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTTGGTGGTATCAGGGTACATCTTGAGGTCGGTCAGACATCCGGCG  858

seq1  CTGACTTTCTTGGAGCTGTGGGTCCCGTGGCCCGCTTTTGACCCTCTTTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTTTCTTGGAGCTGTGGGTCCCGTGGCCCGCTTTTGACCCTCTTTT  908

seq1  CTTCTCGGGGGGAGGGGGGGGAGAGGCCCAATTCAGAGATTAGGACAATA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCGGGGGGAGGGGGGGGAGAGGCCCAATTCAGAGATTAGGACAATA  958

seq1  GCGTTGCCTTAATGGCTCCCAACATTGTTTAAATCTATAAACATTCTTAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTGCCTTAATGGCTCCCAACATTGTTTAAATCTATAAACATTCTTAT  1008

seq1  ACATATGCATTATAATTATGAACTTGGTCTACCTTATTAGGTTAATCCTG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGCATTATAATTATGAACTTGGTCTACCTTATTAGGTTAATCCTG  1058

seq1  CCTAAAAACATGTATCATCTCTCTGAATAACCTACAAAAGTAATAGTCTG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAAACATGTATCATCTCTCTGAATAACCTACAAAAGTAATAGTCTG  1108

seq1  GTCCAGGATATAGAAGTTATTTGAGAAAAGGACAATGATGATGGTTTTCT  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGGATATAGAAGTTATTTGAGAAAAGGACAATGATGATGGTTTTCT  1158

seq1  CATTAACAGAAACATTTAAACTCAGAGCTCAACTTAACTCCACTACAGGA  1247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAACAGAAACATTTAAACTCAGAGCTCAACTTAACTCCACTACAGGA  1208

seq1  ATTC  1251
      ||||
seq2  ATTC  1212