BAC Information

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BAC

Clone NameB6Ng01-170D18
Chromosome17 (Build37)
Map Location 45,611,176 - 45,713,678
singlet/doubletdoublet
Overlap geneSpats1, Aars2, Tcte1, Gm323, Nfkbie, Slc35b2, Hsp90ab1
Upstream geneRunx2, Supt3h, 4930564C03Rik, EG210562, EG668314, Cdc5l, EG668319
Downstream geneSlc29a1, EG653016, Capn11, Tmem63b, Mrpl14, LOC100043363, Vegfa, Mrps18a, 1700027N10Rik, Mad2l1bp, Gtpbp2, Polh, Xpo5, Rpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10, BC040756, Zfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355, Parc, Srf, Ptk7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170D18.bB6Ng01-170D18.g
ACCDH960999DH961000
length1,0521,186
definitionDH960999|Mus musculus domesticus DNA, BAC clone: B6Ng01-170D18, 5' end.DH961000|Mus musculus domesticus DNA, BAC clone: B6Ng01-170D18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,712,637 - 45,713,678)(45,611,176 - 45,612,409)
sequence
gaattcctggcacccacatgggggctcagaaccatttgtaatttccaatt
ccgggggatctgaagaccttcatctgacctctgtgggtaccaggttagca
tacagggtgtacttacatacatgcagccaaaatactacacatagtgtatg
tgtgtacatgcctttaaaatgcaacacagctgatatggtgatacatgtat
tgtgatcagaaataggaggatgagaagcaggcggatttctgagtttgagg
ccagcctggtctacaaagtgagtaccaggacagccagggctatagagaga
aaccctgtctcgaaaaacaaaacaaacaaaaaaagaaataggaggatgag
aagttcaaggtcaaaccaggcactggaggcacatgcctttaatcccagca
tttgggagactaaggcaggctgatttctgagttcaaggccagcctggtct
ataaagttccaggacacagagaaaccctgcaaaaaaaaaaaaaaaaaaaa
aaaaaaaaaaaaaaagaaagaaataccataaaaactaatattcattatta
aacgttcgtgtgtgcgtatttcctggaggagctggagttacagtggctgt
gagctggcagaggtgcccgggtggaacttcggccctcaagaccagttagt
gctggaccttctctctaacccccaggccttttataaaaaggaatcttatc
atcttatcacccgggtgtgaaggtgcgccttcaatcccagcactctggag
gtagtgacacacctactccaacaaggccatacttcctaatagtgccactc
cctaggcatatacaaaccatcacccccccccccccaaaaaagagaactta
tcttgtgtgtgtgtgtgtgtgtgtgtaagtatgggctcaaggacacaatc
aatgcacatgaagagtccagggacaactttgaggagtcagtttgtctctt
tcaccatgggatctgtcatcaaattgaggtctgggctgtctgccttggag
gacctgggaaaatgcttttacccatggagtgagatatcgtgcttccaagc
cc
gaattccgggctactctgggctacatatgaggtagcagtgcttagtcttt
aaaaaaaaaaaaaaaaaaaaaacctataaagctatgagtccaataaacct
tttctctccataagcttatacacccatccaaccttttgatttcccagaac
tcaattgtatttcttttccaccttagtcatgcccaagtcgcttttctctg
gaaccttctgccgctctctagtacaggccgctcttgagacagagggaagt
tggcggacgggattgccatatccagtattcatgggctcaccagttcacac
agtgaaaagcaatcggacccaaaaggtgcttgttagaaaggctatcattc
aaaaccaacagaccccataagtcattgaaattcaagaggcagcgcaaggg
aaaaacctaaatctcactggacctcctagcggtgttcacgggtttgaatg
tcctgcccactcctcctcctcctgactcagggctcccgaaagtactcgcc
ccgccccgtccttgggtctcctttccacctctgagtcccaccctacttcc
ctgggggaagcccttcatctacccttggaagactccatggaggatgtggc
ccagatcaacgcaccaactggcagcggaactgccaaataccaggatgcaa
agcgaaagcaagggcgtctaccaccgcctgcaaggctcggtccagggttg
ccaggacaacgcgccacttcccgcgagctggcgcgctactcttgacgcac
ctatcttcctgcacccggcgctccggcctgggttgaggatggaggtctca
gacctcagagctgcagaacctcaggattttgttttagtttgcggctcttt
tccaacaactgtcattgctacttctgtcacctcgggtggccgtgtgcggt
gcaccctctacagagcttgcagatgtcggtgtagaattggcatcctgatt
agacaggatcaccacacttaccgctctttttctgggcagcgcctgctgat
gctgtcttgctcagcagcagctgcgtttttcaaatagaaaactgacttga
acaaagctcgttcagtcatcagaaaacagattacttcagtcacctacaag
catctttctctctaggaaaactgaattacttctagcgttctataaattcc
aatgaagcccccatcaagcttagtcttattatattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_45712637_45713678
seq2: B6Ng01-170D18.b_48_1090 (reverse)

seq1  AGCACGATGACTCACTCCATGGGTAAAAGCATTTACCCTGGTCCTCCAAG  50
      ||||||||  |||||||||||||||||||||||| ||| |||||||||||
seq2  AGCACGATATCTCACTCCATGGGTAAAAGCATTTTCCCAGGTCCTCCAAG  50

seq1  CAGGACAGCCCAGACCTCAATTTGATGACAGATCCCATGGTGAAAGGGAC  100
         ||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GCAGACAGCCCAGACCTCAATTTGATGACAGATCCCATGGTGAAAGAGAC  100

seq1  AAACTGACTCCTC-AAGTTGTCCTTGGACTTCTTCATGTGCATTGATTGT  149
      ||||||||||||| ||||||||| ||||| ||||||||||||||||||||
seq2  AAACTGACTCCTCAAAGTTGTCCCTGGAC-TCTTCATGTGCATTGATTGT  149

seq1  GTCCTTGTGCCCATACTTACACACACACACACACACACACAAGATAAGTT  199
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTGAGCCCATACTTACACACACACACACACACACACAAGATAAGTT  199

seq1  CTCTTTTTT-GGGGGGGGGGGGTGATGGTTTGTATATGCCTAGGGAGTGG  248
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTTTGGGGGGGGGGGGGTGATGGTTTGTATATGCCTAGGGAGTGG  249

seq1  CACTATTAGGAAGTATGGCCTTGTTGGAGTAGGTGTGTCACTACCTCCAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATTAGGAAGTATGGCCTTGTTGGAGTAGGTGTGTCACTACCTCCAG  299

seq1  AGTGCTGGGATTGAAGGCGCACCTTCACACCCGGGTGATAAGATGATAAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGGGATTGAAGGCGCACCTTCACACCCGGGTGATAAGATGATAAG  349

seq1  ATTCCTTTTTATAAAAGGCCTGGGGGTTAGAGAGAAGGTCCAGCACTAAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTTTTATAAAAGGCCTGGGGGTTAGAGAGAAGGTCCAGCACTAAC  399

seq1  TGGTCTTGAGGGCCGAAGTTCCACCCGGGCACCTCTGCCAGCTCACAGCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTTGAGGGCCGAAGTTCCACCCGGGCACCTCTGCCAGCTCACAGCC  449

seq1  ACTGTAACTCCAGCTCCTCCAGGAAATACGCACACACGAACGTTTAATAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAACTCCAGCTCCTCCAGGAAATACGCACACACGAACGTTTAATAA  499

seq1  TGAATATTAGTTTTTATGGTATTTCTTTCTTTTTTTTTTTTTTTTTTTTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATTAGTTTTTATGGTATTTCTTTCTTTTTTTTTTTTTTTTTTTTT  549

seq1  TTTTTTTTTTTTTTGCAGGGTTTCTCTGTGTCCTGGAACTTTATAGACCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTGCAGGGTTTCTCTGTGTCCTGGAACTTTATAGACCA  599

seq1  GGCTGGCCTTGAACTCAGAAATCAGCCTGCCTTAGTCTCCCAAATGCTGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCCTTGAACTCAGAAATCAGCCTGCCTTAGTCTCCCAAATGCTGG  649

seq1  GATTAAAGGCATGTGCCTCCAGTGCCTGGTTTGACCTTGAACTTCTCATC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAGGCATGTGCCTCCAGTGCCTGGTTTGACCTTGAACTTCTCATC  699

seq1  CTCCTATTTCTTTTTTTGTTTGTTTTGTTTTTCGAGACAGGGTTTCTCTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTATTTCTTTTTTTGTTTGTTTTGTTTTTCGAGACAGGGTTTCTCTC  749

seq1  TATAGCCCTGGCTGTCCTGGTACTCACTTTGTAGACCAGGCTGGCCTCAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCCCTGGCTGTCCTGGTACTCACTTTGTAGACCAGGCTGGCCTCAA  799

seq1  ACTCAGAAATCCGCCTGCTTCTCATCCTCCTATTTCTGATCACAATACAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAAATCCGCCTGCTTCTCATCCTCCTATTTCTGATCACAATACAT  849

seq1  GTATCACCATATCAGCTGTGTTGCATTTTAAAGGCATGTACACACATACA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCACCATATCAGCTGTGTTGCATTTTAAAGGCATGTACACACATACA  899

seq1  CTATGTGTAGTATTTTGGCTGCATGTATGTAAGTACACCCTGTATGCTAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTGTAGTATTTTGGCTGCATGTATGTAAGTACACCCTGTATGCTAA  949

seq1  CCTGGTACCCACAGAGGTCAGATGAAGGTCTTCAGATCCCCCGGAATTGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTACCCACAGAGGTCAGATGAAGGTCTTCAGATCCCCCGGAATTGG  999

seq1  AAATTACAAATGGTTCTGAGCCCCCATGTGGGTGCCAGGAATTC  1042
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACAAATGGTTCTGAGCCCCCATGTGGGTGCCAGGAATTC  1043

seq1: chr17_45611176_45612409
seq2: B6Ng01-170D18.g_67_1252

seq1  GAATTCCGGGCTACTCTGGGCTACATATGAGGTAGCAGTGCTTAGTCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCGGGCTACTCTGGGCTACATATGAGGTAGCAGTGCTTAGTCTTT  50

seq1  AAAAAAAAAAAAAAAAAAAAAACCTATAAAGCTATGAGTCCAATAAACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAAAAACCTATAAAGCTATGAGTCCAATAAACCT  100

seq1  TTTCTCTCCATAAGCTTATACACCCATCCAACCTTTTGATTTCCCAGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTCCATAAGCTTATACACCCATCCAACCTTTTGATTTCCCAGAAC  150

seq1  TCAATTGTATTTCTTTTCCACCTTAGTCATGCCCAAGTCGCTTTTCTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTGTATTTCTTTTCCACCTTAGTCATGCCCAAGTCGCTTTTCTCTG  200

seq1  GAACCTTCTGCCGCTCTCTAGTACAGGCCGCTCTTGAGACAGAGGGAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTTCTGCCGCTCTCTAGTACAGGCCGCTCTTGAGACAGAGGGAAGT  250

seq1  TGGCGGACGGGATTGCCATATCCAGTATTCATGGGCTCACCAGTTCACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGGACGGGATTGCCATATCCAGTATTCATGGGCTCACCAGTTCACAC  300

seq1  AGTGAAAAGCAATCGGACCCAAAAGGTGCTTGTTAGAAAGGCTATCATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAAAGCAATCGGACCCAAAAGGTGCTTGTTAGAAAGGCTATCATTC  350

seq1  AAAACCAACAGACCCCATAAGTCATTGAAATTCAAGAGGCAGCGCAAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAACAGACCCCATAAGTCATTGAAATTCAAGAGGCAGCGCAAGGG  400

seq1  AAAAACCTAAATCTCACTGGACCTCCTAGCGGTGTTCACGGGTTTGAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCTAAATCTCACTGGACCTCCTAGCGGTGTTCACGGGTTTGAATG  450

seq1  TCCTGCCCACTCCTCCTCCTCCTGACTCAGGGCTCCCGAAAGTACTCGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCCACTCCTCCTCCTCCTGACTCAGGGCTCCCGAAAGTACTCGCC  500

seq1  CCGCCCCGTCCTTGGGTCTCCTTTCCACCTCTGAGTCCCACCCTACTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCCCGTCCTTGGGTCTCCTTTCCACCTCTGAGTCCCACCCTACTTCC  550

seq1  CTGGGGGAAGCCCTTCATCTACCCTTGGAAGACTCCATGGAGGATGTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGGAAGCCCTTCATCTACCCTTGGAAGACTCCATGGAGGATGTGGC  600

seq1  CCAGATCAACGCACCAACTGGCAGCGGAACTGCCAAATACCAGGATGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATCAACGCACCAACTGGCAGCGGAACTGCCAAATACCAGGATGCAA  650

seq1  AGCGAAAGCAAGGGCGTCTACCACCGCCTGCAAGGCTCGGTCCAGGGTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGAAAGCAAGGGCGTCTACCACCGCCTGCAAGGCTCGGTCCAGGGTTG  700

seq1  CCAGGACAACGCGCCACTTCCCGCGAGCTGGCGCGCTACTCTTGACGCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGACAACGCGCCACTTCCCGCGAGCTGGCGCGCTACTCTTGACGCAC  750

seq1  CTATCTTCCTGCACCCGGCGCTCCGGCCTGGGTTGAGGATGGAGGTCTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTTCCTGCACCCGGCGCTCCGGCCTGGGTTGAGGATGGAGGTCTCA  800

seq1  GACCTCAGAGCTGCAGAACCTCAGGATTTTGTTTTAGTTTGCGGCTCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCAGAGCTGCAGAACCTCAGGATTTTGTTTTAGTTTGCGGCTCTTT  850

seq1  TCCAACAACTGTCATTGCTACTTCTGTCACCTCGGGTGGCCGTGTGCGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACAACTGTCATTGCTACTTCTGTCACCTCGGGTGGCCGTGTGCGGT  900

seq1  GCACCCTCTACAGAGCTTGCAGATGTCGGTGTAGAATTGGCATCCTGATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCTCTACAGAGCTTGCAGATGTCGGTGTAGAATTGGCATCCTGATT  950

seq1  AGACAGGATTCACCCACCACTTACCGCTCCTTTTTCTGGGCCAGGCGCCC  1000
      |||||||| |||||   ||||||||||| ||||||||||||   ||| ||
seq2  AGACAGGA-TCACC--ACACTTACCGCT-CTTTTTCTGGGC--AGCG-CC  993

seq1  TGCTGGATGCTGTCTTGCCTCAGCAGCCAGCTGCGTTTTTCAAAATAGAA  1050
      |||| |||||||||||| |||||||| |||||||||||||| ||||||||
seq2  TGCT-GATGCTGTCTTG-CTCAGCAG-CAGCTGCGTTTTTC-AAATAGAA  1039

seq1  AACTGACTTTGAACAAAGGCTCGTTCAAGGTCATCCAGAAAACAGATTCA  1100
      ||||||| ||||||||| |||||||||  ||||| ||||||||||||| |
seq2  AACTGAC-TTGAACAAA-GCTCGTTCA--GTCAT-CAGAAAACAGATT-A  1083

seq1  CTCCCAAGTTCCACCCTTACAAAGCTATCTTTCTCTCCATGGTATAGACT  1150
      || |  |||  ||||  ||| |||| ||||||||||| | |    | |||
seq2  CTTC--AGT--CACC--TAC-AAGC-ATCTTTCTCTCTAGG---AAAACT  1122

seq1  GAAATTTATCTTTCTAACCCTTTCCCTAATAAATCTCACATAGAAACGCC  1200
      |||  |||   ||||| |  | |     |||||| || ||  |||    |
seq2  GAA--TTA--CTTCTAGCGTTCT-----ATAAAT-TC-CAATGAA---GC  1158

seq1  CCCCATCCCAAGCTTAGTCTCTAAATTTATATTG  1234
      ||||||  |||||||||||| ||   ||||||||
seq2  CCCCAT--CAAGCTTAGTCT-TA---TTATATTG  1186