BAC Information

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BAC

Clone NameB6Ng01-170H11
Chromosome17 (Build37)
Map Location 16,825,551 - 16,980,294
singlet/doubletdoublet
Overlap geneLOC100041407, LOC665072, EG383211
Upstream gene5830433I10Rik, Chd1, Rgmb, LOC100041365, Eif3s6-ps3, LOC100041383, LOC100041394, LOC213781
Downstream geneLOC626785, LOC665085, BC002059, BC018101, Zfp97, EG382161, LOC676238, EG626854, LOC100041965, Riok2, Lix1, LOC383297, Lnpep, EG665140, LOC100041519, EG626942, 4930546H06Rik, Has1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170H11.bB6Ng01-170H11.g
ACCDH961171DH961172
length1,085762
definitionDH961171|Mus musculus domesticus DNA, BAC clone: B6Ng01-170H11, 5' end.DH961172|Mus musculus domesticus DNA, BAC clone: B6Ng01-170H11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,979,197 - 16,980,294)(16,825,551 - 16,826,249)
sequence
gaattcacattaccacaataaagagcatattctaccagtggaataatgag
catattctactagtggaaaaatgagcatattctaccagtggaataatgag
atccattatctttttttcatctttttaaaaattatctcatgctttcatta
tattttcatcagaagaattatttcatatcttcaagatcttccagtccctt
aatctaatttttcacaattatggcacatattttttattttgtccactgag
cagtctaagttatatcctttttgtttttttttaaattactgccttaaatt
atatactaattctgagtaaatttggtgatttgtgtcctaaaacccaccca
gtgaggttcctgactactacagagtaagaatcatataactgtgatttgtt
ttgtttcaagggcagtacctctaaaaacatcctggtcattatccaaggac
agtatactccatagctgggtcagatactcctctcagtttcctgtgattat
tgaaaatattgtacagtgtatcagagtccaataatgtcagactcttacca
ctgaccatattcagaactttaaatttaatattttttaatactcctagttt
ataatctgtttcctttatttactcttctatgcatcagaatgctcaaaact
gaaccttcaccttcctcccaggacagtggttcactgtctccctctcttct
tcatcttctactttcctaatctacctcctgctcaaatctctaccatctga
caagacttttgacttacttgtcggtgccacacatccttttattttgagtt
aacatttcacctctccatcatcctttagtttttcaactaatggattttgg
ctaatatataaaaacataaaattttagtcataattgtgaactattacatt
tcttgtgtaaacaagtcataaatccactaagtagtgatttcccatttttc
ttctcagtccattctttttacttaagcaatgagcttgaacccagctttgc
ttatgctagcaatgcttatttgctgagtgccccttcatttctcagacaat
tattaacattgtcttccagtcattctttcatccaa
gaattctctgtgagcaaatcatgaggcacactgaaattaattcggccctt
tttaacttctttaagccagtggctctcaacctgcgagttgcaatcccttt
gagaccactggaaaatacagatatttacattatgattcacaacagtagca
aaaattaaagttgcgaagtagtaacataaatagttgtatcattggggcca
ccacaacatgatgaattttattaaagggtctcaccattagaaaggttgag
aactgcttcaagtctaagtacttctgtgtattgaaaataattcccaggtg
cacttctctgctacagagattctggaagaaaaaaaaaagtttccccctat
cctggtctgtgctccaaaaatgatttgtttcctcttaacccctggttaga
ggagggcacccaaaacttttttataggaaaatattcctttttctggtaaa
aaaatgggctacttcatcttttctgaatttatgcccttccgttaaataac
tggattttttttactggggataaaaacttcccggaaaaaacccaaatagg
gataaaaccccaaatttcccttttttgacccccgggggttaaaaaaggaa
aaaaaaaatggggttggggttttcaaaaaccaccctcttttttttctttt
ttttaaaaaatattttattcatttaacttaatttatttatggggaaaaaa
aaataaatttggggaatggtaaagtggccctaaaatcccctaaaaaaaat
ggggaaaaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_16979197_16980294
seq2: B6Ng01-170H11.b_45_1129 (reverse)

seq1  TTGGATGAAAGAAATAGAACCTTGGAAAGACAATGTTAAATAATAGTCTG  50
      |||||||||||||  |    ||  | ||||||||||| |||||| |||||
seq2  TTGGATGAAAGAATGA----CT--GGAAGACAATGTT-AATAATTGTCTG  43

seq1  AG-AATGAAGGGTGCAACTCAGCAAATAAGCATTTGCCTAGCATAAGCAA  99
      || ||||||||| || ||||||||||||||||||   |||||||||||||
seq2  AGAAATGAAGGG-GC-ACTCAGCAAATAAGCATT--GCTAGCATAAGCAA  89

seq1  AGCTTGGGTTCCAAGCTCATTGCTTAAAGTAAAAAGAATGGACTGAGAAG  149
      ||| |||||| |||||||||||||| ||||||||||||||||||||||||
seq2  AGC-TGGGTT-CAAGCTCATTGCTT-AAGTAAAAAGAATGGACTGAGAAG  136

seq1  AAAAATGGGAAATCACTACTTAGTGGATTTATGACTTGTTTACACAAGAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGGGAAATCACTACTTAGTGGATTTATGACTTGTTTACACAAGAA  186

seq1  ATGTAATAGTTCACAATTATGACTAAAATTTTATGTTTTTATATATTAGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAATAGTTCACAATTATGACTAAAATTTTATGTTTTTATATATTAGC  236

seq1  CAAAATCCATTAGTTGAAAAACTAAAGGATGATGGAGAGGTGAAATGTTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATCCATTAGTTGAAAAACTAAAGGATGATGGAGAGGTGAAATGTTA  286

seq1  ACTCAAAATAAAAGGATGTGTGGCACCGACAAGTAAGTCAAAAGTCTTGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAAATAAAAGGATGTGTGGCACCGACAAGTAAGTCAAAAGTCTTGT  336

seq1  CAGATGGTAGAGATTTGAGCAGGAGGTAGATTAGGAAAGTAGAAGATGAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGGTAGAGATTTGAGCAGGAGGTAGATTAGGAAAGTAGAAGATGAA  386

seq1  GAAGAGAGGGAGACAGTGAACCACTGTCCTGGGAGGAAGGTGAAGGTTCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAGGGAGACAGTGAACCACTGTCCTGGGAGGAAGGTGAAGGTTCA  436

seq1  GTTTTGAGCATTCTGATGCATAGAAGAGTAAATAAAGGAAACAGATTATA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGAGCATTCTGATGCATAGAAGAGTAAATAAAGGAAACAGATTATA  486

seq1  AACTAGGAGTATTAAAAAATATTAAATTTAAAGTTCTGAATATGGTCAGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGGAGTATTAAAAAATATTAAATTTAAAGTTCTGAATATGGTCAGT  536

seq1  GGTAAGAGTCTGACATTATTGGACTCTGATACACTGTACAATATTTTCAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGAGTCTGACATTATTGGACTCTGATACACTGTACAATATTTTCAA  586

seq1  TAATCACAGGAAACTGAGAGGAGTATCTGACCCAGCTATGGAGTATACTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCACAGGAAACTGAGAGGAGTATCTGACCCAGCTATGGAGTATACTG  636

seq1  TCCTTGGATAATGACCAGGATGTTTTTAGAGGTACTGCCCTTGAAACAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGGATAATGACCAGGATGTTTTTAGAGGTACTGCCCTTGAAACAAA  686

seq1  ACAAATCACAGTTATATGATTCTTACTCTGTAGTAGTCAGGAACCTCACT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATCACAGTTATATGATTCTTACTCTGTAGTAGTCAGGAACCTCACT  736

seq1  GGGTGGGTTTTAGGACACAAATCACCAAATTTACTCAGAATTAGTATATA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGTTTTAGGACACAAATCACCAAATTTACTCAGAATTAGTATATA  786

seq1  ATTTAAGGCAGTAATTTAAAAAAAAACAAAAAGGATATAACTTAGACTGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGGCAGTAATTTAAAAAAAAACAAAAAGGATATAACTTAGACTGC  836

seq1  TCAGTGGACAAAATAAAAAATATGTGCCATAATTGTGAAAAATTAGATTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGGACAAAATAAAAAATATGTGCCATAATTGTGAAAAATTAGATTA  886

seq1  AGGGACTGGAAGATCTTGAAGATATGAAATAATTCTTCTGATGAAAATAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACTGGAAGATCTTGAAGATATGAAATAATTCTTCTGATGAAAATAT  936

seq1  AATGAAAGCATGAGATAATTTTTAAAAAGATGAAAAAAAGATAATGGATC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAGCATGAGATAATTTTTAAAAAGATGAAAAAAAGATAATGGATC  986

seq1  TCATTATTCCACTGGTAGAATATGCTCATTTTTCCACTAGTAGAATATGC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTATTCCACTGGTAGAATATGCTCATTTTTCCACTAGTAGAATATGC  1036

seq1  TCATTATTCCACTGGTAGAATATGCTCTTTATTGTGGTAATGTGAATTC  1098
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTATTCCACTGGTAGAATATGCTCTTTATTGTGGTAATGTGAATTC  1085

seq1: chr17_16825551_16826249
seq2: B6Ng01-170H11.g_67_828

seq1  GAATTCTCTGTGAGCAAATCATGAGGCACACTGAAATTAATTCGGCCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTGAGCAAATCATGAGGCACACTGAAATTAATTCGGCCCTT  50

seq1  TTTAACTTCTTTAAGCCAGTGGCTCTCAACCTGCGAGTTGCAATCCCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTTCTTTAAGCCAGTGGCTCTCAACCTGCGAGTTGCAATCCCTTT  100

seq1  GAGACCACTGGAAAATACAGATATTTACATTATGATTCACAACAGTAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCACTGGAAAATACAGATATTTACATTATGATTCACAACAGTAGCA  150

seq1  AAAATTAAAGTTGCGAAGTAGTAACATAAATAGTTGTATCATTGGGGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAAAGTTGCGAAGTAGTAACATAAATAGTTGTATCATTGGGGCCA  200

seq1  CCACAACATGATGAATTTTATTAAAGGGTCTCACCATTAGAAAGGTTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAACATGATGAATTTTATTAAAGGGTCTCACCATTAGAAAGGTTGAG  250

seq1  AACTGCTTCAAGTCTAAGTACTTCTGTGTATTGAAAATAATTCCCAGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTTCAAGTCTAAGTACTTCTGTGTATTGAAAATAATTCCCAGGTG  300

seq1  CACTTCTCTGCTACAGAGATTCTG---GAGAAAAAAAAGTT--ACCCTAT  345
      ||||||||||||||||||||||||   || |||||||||||   ||||||
seq2  CACTTCTCTGCTACAGAGATTCTGGAAGAAAAAAAAAAGTTTCCCCCTAT  350

seq1  CCT-GTCTGTGCTCC-AAAATGA-TTGTTT-CTCTTAACTC--TGTTAGA  389
      ||| ||||||||||| ||||||| |||||| |||||||| |   ||||||
seq2  CCTGGTCTGTGCTCCAAAAATGATTTGTTTCCTCTTAACCCCTGGTTAGA  400

seq1  G--AGGCACC--AAAC--TATTATAGG-AAATAT--CCTTTTCT-GTAGA  429
      |   ||||||  ||||  | ||||||| ||||||  | |||||| ||| |
seq2  GGAGGGCACCCAAAACTTTTTTATAGGAAAATATTCCTTTTTCTGGTAAA  450

seq1  AAA--TGGCTAC-TCATC-TTTCTG-ATTTATG-CCTACAGTT-AATAAC  472
      |||   |||||| ||||| |||||| ||||||| ||| | ||| ||||||
seq2  AAAATGGGCTACTTCATCTTTTCTGAATTTATGCCCTTCCGTTAAATAAC  500

seq1  TG--ATTATTTTACT-GAGATAAAA--CTCCTGTAAGAA--CCAAATA-G  514
      ||   || ||||||| | |||||||   ||| | || ||  ||||||| |
seq2  TGGATTTTTTTTACTGGGGATAAAAACTTCCCGGAAAAAACCCAAATAGG  550

seq1  GAT-AGAGCCCAGATT--CGCTATCTGACCAC--TGGGATAAAAAAGGAA  559
      ||| | | |||| |||  |  | | ||||| |   ||| |||||||||||
seq2  GATAAAACCCCAAATTTCCCTTTTTTGACCCCCGGGGGTTAAAAAAGGAA  600

seq1  GACAAAA---TGGTT--GGTATTCAACAACTAC---ATCTTTTTGCTTTT  601
       | ||||    ||||  ||| ||||| ||| ||    | ||||| |||||
seq2  AAAAAAAATGGGGTTGGGGTTTTCAAAAACCACCCTCTTTTTTTTCTTTT  650

seq1  TTT--AAGATTTATTTATTTATTTA--TTTATTTATTTATTTGG--AAAT  645
      |||  || | |  |||||| |||||  || ||||||||||  ||  ||| 
seq2  TTTTAAAAAATATTTTATTCATTTAACTTAATTTATTTATGGGGAAAAAA  700

seq1  AAATAAATT---GGAAATGTAAA--TGAGCTAAA--TACCTAATAAAAAT  688
      |||||||||   ||||  |||||   |  |||||    ||||| ||||||
seq2  AAATAAATTTGGGGAATGGTAAAGTGGCCCTAAAATCCCCTAAAAAAAAT  750

seq1  GGGAAAAAAAA-  699
      ||| ||||||| 
seq2  GGGGAAAAAAAA  762