BAC Information

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BAC

Clone NameB6Ng01-171M06
Chromosome17 (Build37)
Map Location 55,073,866 - 55,206,343
singlet/doubletdoublet
Overlap geneEG629178
Upstream geneLOC629121, Gm324, Sult1c1, LOC100043829, EG435531, Slc5a7, LOC668529, 1700025K24Rik, Trp53-ps, LOC240117
Downstream geneLOC100043833, LOC100043485, LOC677496, St6gal2, LOC383258, Pot1b, Emr4, Zfp119, BC011426, EG433125, BC031441, Ebi3, Ccdc94, Shd, Fsd1, AW049765, Mpnd, Sh3gl1, Chaf1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-171M06.bB6Ng01-171M06.g
ACCGA000559GA000560
length9831,139
definitionB6Ng01-171M06.b B6Ng01-171M06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,073,866 - 55,074,561)(55,205,182 - 55,206,343)
sequence
gaattcctatgcctcaggaattgacagcaagccttggaaacatagacaga
tagcaacttgaaaactgaaacctgcaatggaagttggactgtctttctac
attgcagcaataatgttccattgaatgaaatgctatcttcttgaattatt
caccctttgtccactctaaccactccaaattaatgttatgtttatttatt
tcattttttgagattataattacatcatttctcattccatatcctctatc
caaactattctgtgaaatctcaaacttactctcattcaaattcttgacct
ctttttgtctttattaaatatacaaatgtaatatatttaatatattccca
atgatataaatacaaccagctaagtctgtatctatataattttacttgca
tgtatgtgctttcagggctgactatttggtacgggataaccaagtagtat
tctcttctctgaggaagactatttctcccattctcagtattccttaatca
ccagcaactctttgttttaggttgaggcttccagagaatttactctgcta
tgttaatatatttattcttgttggccttcttcagctcctgtttaggtcat
tagtaagacattatcagtgtagcttctgagagttctaggagatgcaatca
tagagcaaaattccagattctctagcttttacaatctttctgctccttat
tctacaatgatctcagggcctttggtgagggactttgtattgtagattca
tcagtagggatttggctccataattctgcactatgtttggaaatagtgtc
ctataatgttctctattttgaaaagagaagcctccttgatgaatggtaag
gactacacttatctgtgggtataagaacaaatatttagatgaagttaatg
aggtttctagtttagcaaagtgatagttctagggtatcctccaagaatcc
atgagttccacttcattagtcctagctccaaat
gaattcctaggttctatgatccttctgcataatagaagggatgatgaata
gaagggaacacaaggttcaacctactgtttcctaaaacaccccagtgcca
gatttgggagtggcatgtcctgaatcccataagagcacacatggttgctg
acagaatgaaaggccttgtattcataaccctaagccttcagcccctacag
tttgtgctattttccctccatgagaccatatcgtattacgttctattaac
aacagattgtagctataaagacagcagggactaagacctactctgcacgg
ggagctcagtgtcctctaagaactctgcttaattgaatgaaaccaagcct
ttcctatgaccagagacttttgtattttttctctgggacaggtgaagatg
ttgaacattgttctattaacaacaaaactaaaaacatgaacaaactgaga
attagccctcatactagatcatccagagactcatgtatgacaaactcctg
agcactggaaataaaggtaaatacagagacgtacacggctcgtacacggc
tgtctgaccacacaggaataactgcagagttattataatgtgagcatgaa
tgaccttgagaggtgagagctgagtacctggtatatcgcagaagatctat
ggctgcaggctgcctatgttttacatccaggttatcattgtgaatattag
agaaaagtcttctggacccaaaacccaggattgtaatattctcattgtat
tctaagtttttgctttctacaaaaatgatgaaagaaacggacttacctag
gcttagaggaaagttaggagagaactgggagtcttctttatccttgtctc
atgtaagaagaataaggccaaatatctcttctggaaaccatgtcccaaag
tacaaggaggctgacacactaaaactcaagacactctacaccttggtata
tgagactctccagagtgatccatatgatataagatcacactgagagcagc
agccaacactatccgaagattcaattagacccactgagcaaagcacacct
tttagtaagagaattactgatgtttatctttgagctatccattgaaccaa
tcttacctgacggacattgcatgcagtctaaatagtgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_55073866_55074561
seq2: B6Ng01-171M06.b_30_725

seq1  GAATTCCTATGCCTCAGGAATTGACAGCAAGCCTTGGAAACATAGACAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATGCCTCAGGAATTGACAGCAAGCCTTGGAAACATAGACAGA  50

seq1  TAGCAACTTGAAAACTGAAACCTGCAATGGAAGTTGGACTGTCTTTCTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAACTTGAAAACTGAAACCTGCAATGGAAGTTGGACTGTCTTTCTAC  100

seq1  ATTGCAGCAATAATGTTCCATTGAATGAAATGCTATCTTCTTGAATTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAGCAATAATGTTCCATTGAATGAAATGCTATCTTCTTGAATTATT  150

seq1  CACCCTTTGTCCACTCTAACCACTCCAAATTAATGTTATGTTTATTTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTTTGTCCACTCTAACCACTCCAAATTAATGTTATGTTTATTTATT  200

seq1  TCATTTTTTGAGATTATAATTACATCATTTCTCATTCCATATCCTCTATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTTTGAGATTATAATTACATCATTTCTCATTCCATATCCTCTATC  250

seq1  CAAACTATTCTGTGAAATCTCAAACTTACTCTCATTCAAATTCTTGACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTATTCTGTGAAATCTCAAACTTACTCTCATTCAAATTCTTGACCT  300

seq1  CTTTTTGTCTTTATTAAATATACAAATGTAATATATTTAATATATTCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGTCTTTATTAAATATACAAATGTAATATATTTAATATATTCCCA  350

seq1  ATGATATAAATACAACCAGCTAAGTCTGTATCTATATAATTTTACTTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATATAAATACAACCAGCTAAGTCTGTATCTATATAATTTTACTTGCA  400

seq1  TGTATGTGCTTTCAGGGCTGACTATTTGGTACGGGATAACCAAGTAGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTGCTTTCAGGGCTGACTATTTGGTACGGGATAACCAAGTAGTAT  450

seq1  TCTCTTCTCTGAGGAAGACTATTTCTCCCATTCTCAGTATTCCTTAATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCTCTGAGGAAGACTATTTCTCCCATTCTCAGTATTCCTTAATCA  500

seq1  CCAGCAACTCTTTGTTTTAGGTTGAGGCTTCCAGAGAATTTACTCTGCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAACTCTTTGTTTTAGGTTGAGGCTTCCAGAGAATTTACTCTGCTA  550

seq1  TGTTAATATATTTATTCTTGTTGGCCTTCTTCAGCTCCTGTTTAGGTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAATATATTTATTCTTGTTGGCCTTCTTCAGCTCCTGTTTAGGTCAT  600

seq1  TAGTAAGACATTATCAGTGTAGCTTCTGAGAGTTCTAGGAGATGCAATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAGACATTATCAGTGTAGCTTCTGAGAGTTCTAGGAGATGCAATCA  650

seq1  TAGAGCAAAATTCCAGATTCTCTAGCTTTTACAATCTTTCTGCTCC  696
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCAAAATTCCAGATTCTCTAGCTTTTACAATCTTTCTGCTCC  696

seq1: chr17_55205182_55206343
seq2: B6Ng01-171M06.g_64_1202 (reverse)

seq1  TACATTATTTAGGACTGCATGCATTTGTGTTCGTTTCCAGGTTAAGATTG  50
      |||| |||||| |||||||||||    ||| |||   |||| ||||||||
seq2  TACACTATTTA-GACTGCATGCA---ATGTCCGT---CAGG-TAAGATTG  42

seq1  CT--CATTGATAGCTCAAAGATAAACAATCAGTTATTCTCTTTAACTTAA  98
       |   || |||||||||||||||||| |||||| ||||||||  || |||
seq2  GTTCAATGGATAGCTCAAAGATAAAC-ATCAGTAATTCTCTT--AC-TAA  88

seq1  AAGGTGTGCTTTGCTTCAGTGGGTCTTAATTGAATCTCTGGATAGTTGTT  148
      |||||||||||||| |||||||||| |||||||||||  |||||||   |
seq2  AAGGTGTGCTTTGC-TCAGTGGGTC-TAATTGAATCTTCGGATAGT--GT  134

seq1  TGGCTTGCTGCTCTTCAGTTGTGATCTTTATAATCATATTGGATCACTCC  198
      |||| |||||||| |||| ||||||| |||| |||||| ||||||||| |
seq2  TGGC-TGCTGCTC-TCAG-TGTGATC-TTAT-ATCATA-TGGATCACT-C  177

seq1  TGGAGAGTCTCATATACCAAGGTGTAGAGTGTCTTGAGTTTTAGTGTGTC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGTCTCATATACCAAGGTGTAGAGTGTCTTGAGTTTTAGTGTGTC  227

seq1  AGCCTCCTTGTACTTTGGGACATTGGTTTCCAGAAGAGATATTTTGGCCT  298
      |||||||||||||||||||||| |||||||||||||||||| ||||||| 
seq2  AGCCTCCTTGTACTTTGGGACA-TGGTTTCCAGAAGAGATA-TTTGGCC-  274

seq1  TTATTCTTCTTACATGAGACAAGGATAAAGAAGACT-CCAGTTCTCTCCT  347
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTATTCTTCTTACATGAGACAAGGATAAAGAAGACTCCCAGTTCTCTCCT  324

seq1  AACTTTCCTCTAAGCCTAGGTAAGTCCGTTTCTTTCATCATTTTTGTAGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTCCTCTAAGCCTAGGTAAGTCCGTTTCTTTCATCATTTTTGTAGA  374

seq1  AAGCAAAAACTTAGAATACAATGAGAATATTACAATCCTGGGTTTTGGGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAAACTTAGAATACAATGAGAATATTACAATCCTGGGTTTTGGGT  424

seq1  CCAGAAGACTTTTCTCTAATATTCACAATGATAACCTGGATGTAAAACAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGACTTTTCTCTAATATTCACAATGATAACCTGGATGTAAAACAT  474

seq1  AGGCAGCCTGCAGCCATAGATCTTCTGCGATATACCAGGTACTCAGCTCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGCCTGCAGCCATAGATCTTCTGCGATATACCAGGTACTCAGCTCT  524

seq1  CACCTCTCAAGGTCATTCATGCTCACATTATAATAACTCTGCAGTTATTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCTCAAGGTCATTCATGCTCACATTATAATAACTCTGCAGTTATTC  574

seq1  CTGTGTGGTCAGACAGCCGTGTACGAGCCGTGTACGTCTCTGTATTTACC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGGTCAGACAGCCGTGTACGAGCCGTGTACGTCTCTGTATTTACC  624

seq1  TTTATTTCCAGTGCTCAGGAGTTTGTCATACATGAGTCTCTGGATGATCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTCCAGTGCTCAGGAGTTTGTCATACATGAGTCTCTGGATGATCT  674

seq1  AGTATGAGGGCTAATTCTCAGTTTGTTCATGTTTTTAGTTTTGTTGTTAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGAGGGCTAATTCTCAGTTTGTTCATGTTTTTAGTTTTGTTGTTAA  724

seq1  TAGAACAATGTTCAACATCTTCACCTGTCCCAGAGAAAAAATACAAAAGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACAATGTTCAACATCTTCACCTGTCCCAGAGAAAAAATACAAAAGT  774

seq1  CTCTGGTCATAGGAAAGGCTTGGTTTCATTCAATTAAGCAGAGTTCTTAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTCATAGGAAAGGCTTGGTTTCATTCAATTAAGCAGAGTTCTTAG  824

seq1  AGGACACTGAGCTCCCCGTGCAGAGTAGGTCTTAGTCCCTGCTGTCTTTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACACTGAGCTCCCCGTGCAGAGTAGGTCTTAGTCCCTGCTGTCTTTA  874

seq1  TAGCTACAATCTGTTGTTAATAGAACGTAATACGATATGGTCTCATGGAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTACAATCTGTTGTTAATAGAACGTAATACGATATGGTCTCATGGAG  924

seq1  GGAAAATAGCACAAACTGTAGGGGCTGAAGGCTTAGGGTTATGAATACAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATAGCACAAACTGTAGGGGCTGAAGGCTTAGGGTTATGAATACAA  974

seq1  GGCCTTTCATTCTGTCAGCAACCATGTGTGCTCTTATGGGATTCAGGACA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTTCATTCTGTCAGCAACCATGTGTGCTCTTATGGGATTCAGGACA  1024

seq1  TGCCACTCCCAAATCTGGCACTGGGGTGTTTTAGGAAACAGTAGGTTGAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACTCCCAAATCTGGCACTGGGGTGTTTTAGGAAACAGTAGGTTGAA  1074

seq1  CCTTGTGTTCCCTTCTATTCATCATCCCTTCTATTATGCAGAAGGATCAT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTGTTCCCTTCTATTCATCATCCCTTCTATTATGCAGAAGGATCAT  1124

seq1  AGAACCTAGGAATTC  1162
      |||||||||||||||
seq2  AGAACCTAGGAATTC  1139