BAC Information

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BAC

Clone NameB6Ng01-172A19
Chromosome17 (Build37)
Map Location 60,065,256 - 60,066,470
singlet/doubletsinglet
Overlap genenone
Upstream gene2610034M16Rik, Nudt12, 4930505H01Rik, LOC100043537, LOC100043542
Downstream geneLOC100043549
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-172A19.bB6Ng01-172A19.g
ACCGA000771GA000772
length1,2171,165
definitionB6Ng01-172A19.b B6Ng01-172A19.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccagtatcaagtgtgaaactccagaaagcaagtcctcaggccagc
tctggccacatgcagcactgtgtatccctgtccctcctgctgtcactgtc
gcagaagatgagacaaattctgaaataacggtgattttcccagtcaaccc
actcagccatacccttatatcctacagattcctcaactctggacactgtg
gaactgtcagacagtggacattattcccagtctagtcattttgttttcca
ggattttcgaacacaaatatggttgcaacatggtaaagcattatgtgttt
ttcattctttttaatagctgagtagtactccattgtgtagatgtaccaca
ttttctgaacccaaatgcccctcaacagtggaatggatacaaaaaataat
tctcttaagatgtttatgcttgttgtgaactaaaggataaatttaatgtg
agagtaagacatcattagttaacacagaaatatcacaagataccacagat
ttacatatatttaaattttacttgtttgattcttttataggccttattgt
tggttttgatttcatcccttttccctactatgatggataacttaccaaca
gagactgaaagattgcaattggatttacagtattgtggtcccatcgaatt
tgataacacagaggaaaaaaagttgtaaatgaaaatctgaattccagtac
ccgacaatgctattcactttttcttatgatacaattaggatgaaactatc
aatgtatttcgtaaatgttctgattccaaatatggatttaccaatagatt
ttaagaatattttcttggaaatatagtagactgtcaaatgtgaaagtaaa
taactacttagaatttatggttaacagaaaggttaatggctggaaagatt
aagaacacttgccagttttttcagagtacttgggttcagttcttagtacc
tacatctgatttctcacagtcaactggagttccagttccaggagatctga
cattccctttatctgacaatgccttttctttggcattctactaagtgtga
aaagaacatacatttagaacatatctgctacacacaccccgctcgtcacc
acgcatcctctccgctaagtaatagattaaattaattctttggaaacaaa
acaacacacaatggaatttcttaaatatttaccgagtcaacaaaatcaag
cggtgcgcaatatcaca
gaattcatgaaagtagtagttaccttttgctctggtttttcccaacccct
ggctcttaaatacctctgcttctttttcctgaatggcccctgaatgtcag
aagtcagcaaacaatagtgtactgccttaaatatatgttaggaaaatagt
ggaaggcttgtggaaataatcaactaataccaaatttgatttagagtcca
ttctagaagatgcaacccatacctgacattgcttgagtaatgaaaagcca
gaaaaaaaaaaaagatatagcagtgtccaaggataaagccaaataatact
aatctaaagaaataaaaataaaaagatataaaatggctcctcactatatt
ctgtcatagtcatagatcagtgccttggtgccagctatcactggagaagt
ttctttccacaacagcaaaactatagaaacctacatccagatattacaca
gagagagagtaaggtctcagaaaacccatgcctgaactggatggctttat
caagtccttccctgcagagtgaagggaacaccatacaaatggagctcacc
aggtcctctgcatatttattatggcctcaagtttaatatttttgtgggat
tcttaattgtttcaatgagtgagtctctgactcttatgtctcttaagcta
ttttcttcctgttggtttgtacggtccaaatttaatataataatttttgt
tgtgtatagttaaattttattttgttaaactaaaaatatgactgaggtaa
tgaatgaatgaatgaatgaatgaatgaatgaatgaatgaaaaccaagcca
ctgaggttacaggttaacacttaactgtcacttgtcccttctgggagagg
taaaatcaattttctccaatagtgtgacactggggatattaacttactcc
agtttggccaactttatgtactgcctcaagaaacaaaaactcaaaccacc
agccaaaatccctctaaaccagtaaaacaaaattaaaccccatcaaactt
aaaacatatattacacacatgcgtacaccactcaccatcacgatcagcat
catctgcaaccatcatcaccaaagtaacgcaggagaatccgtaatcaact
aattaatttacactgtgatcatcattttggtcgatatctcctgaaaccat
ggaagggactctaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_60065256_60066470
seq2: B6Ng01-172A19.b_44_1260

seq1  GAATTCCAGTATCAAGTGTGAAACTCCAGAAAGCAAGTCCTCAGGCCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTATCAAGTGTGAAACTCCAGAAAGCAAGTCCTCAGGCCAGC  50

seq1  TCTGGCCACATGCAGCACTGTGTATCCCTGTCCCTCCTGCTGTCACTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCCACATGCAGCACTGTGTATCCCTGTCCCTCCTGCTGTCACTGTC  100

seq1  GCAGAAGATGAGACAAATTCTGAAATAACGGTGATTTTCCCAGTCAACCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGATGAGACAAATTCTGAAATAACGGTGATTTTCCCAGTCAACCC  150

seq1  ACTCAGCCATACCCTTATATCCTACAGATTCCTCAACTCTGGACACTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGCCATACCCTTATATCCTACAGATTCCTCAACTCTGGACACTGTG  200

seq1  GAACTGTCAGACAGTGGACATTATTCCCAGTCTAGTCATTTTGTTTTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGTCAGACAGTGGACATTATTCCCAGTCTAGTCATTTTGTTTTCCA  250

seq1  GGATTTTCGAACACAAATATGGTTGCAACATGGTAAAGCATTATGTGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTCGAACACAAATATGGTTGCAACATGGTAAAGCATTATGTGTTT  300

seq1  TTCATTCTTTTTAATAGCTGAGTAGTACTCCATTGTGTAGATGTACCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCTTTTTAATAGCTGAGTAGTACTCCATTGTGTAGATGTACCACA  350

seq1  TTTTCTGAACCCAAATGCCCCTCAACAGTGGAATGGATACAAAAAATAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGAACCCAAATGCCCCTCAACAGTGGAATGGATACAAAAAATAAT  400

seq1  TCTCTTAAGATGTTTATGCTTGTTGTGAACTAAAGGATAAATTTAATGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTAAGATGTTTATGCTTGTTGTGAACTAAAGGATAAATTTAATGTG  450

seq1  AGAGTAAGACATCATTAGTTAACACAGAAATATCACAAGATACCACAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAAGACATCATTAGTTAACACAGAAATATCACAAGATACCACAGAT  500

seq1  TTACATATATTTAAATTTTACTTGTTTGATTCTTTTATAGGCCTTATTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATATATTTAAATTTTACTTGTTTGATTCTTTTATAGGCCTTATTGT  550

seq1  TGGTTTTGATTTCATCCCTTTTCCCTACTATGATGGATAACTTACCAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTGATTTCATCCCTTTTCCCTACTATGATGGATAACTTACCAACA  600

seq1  GAGACTGAAAGATTGCAATTGGATTTACAGTATTGTGGTCCCATCGAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTGAAAGATTGCAATTGGATTTACAGTATTGTGGTCCCATCGAATT  650

seq1  TGATAACACAGAGGAAAAAAAGTTGTAAATGAAAATCTGAATTCCAGTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAACACAGAGGAAAAAAAGTTGTAAATGAAAATCTGAATTCCAGTAC  700

seq1  CCGACAATGCTATTCACTTTTTCTTATGATACAATTAGGATGAAACTATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGACAATGCTATTCACTTTTTCTTATGATACAATTAGGATGAAACTATC  750

seq1  AATGTATTTCGTAAATGTTCTGATTCCAAATATGGATTTACCAATAGATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATTTCGTAAATGTTCTGATTCCAAATATGGATTTACCAATAGATT  800

seq1  TTAAGAATATTTTCTTGGAAATATAGTAGACTGTCAAATGTGAAAGTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAATATTTTCTTGGAAATATAGTAGACTGTCAAATGTGAAAGTAAA  850

seq1  TAACTACTTAGAATTTATGGTTAACAGAAAGGTTAATGGCTGGAAAGATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTACTTAGAATTTATGGTTAACAGAAAGGTTAATGGCTGGAAAGATT  900

seq1  AAGAACACTTGCCAGTTTTTTCAGAGTACTTGGGTTCAGTTCTTAGTACC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACACTTGCCAGTTTTTTCAGAGTACTTGGGTTCAGTTCTTAGTACC  950

seq1  TACATCTGATTTCTCACAGTCAACTGGAGTTCCAGTTCCAGGAGATCTGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCTGATTTCTCACAGTCAACTGGAGTTCCAGTTCCAGGAGATCTGA  1000

seq1  CATTCCCTTTTATCTGACAATGCCTTTCTTTGGGCATTCTACTAAAGTGT  1050
      ||||||| |||||||||||||||||||  || ||||||||||| ||||| 
seq2  CATTCCC-TTTATCTGACAATGCCTTTTCTTTGGCATTCTACT-AAGTG-  1047

seq1  TGAAAAG-ACATACATTAAG-ACATATCTGCATACACACACACACACACA  1098
      ||||||| ||||||||| || |||||||||| ||||||||| | | | | 
seq2  TGAAAAGAACATACATTTAGAACATATCTGC-TACACACAC-CCCGCTC-  1094

seq1  CACACACACACACACACACACACAAAGTAAATAGAT--AAATAAATCTTT  1146
        ||| ||| ||  | | | | | |||| |||||||  || ||| |||||
seq2  GTCAC-CACGCATCCTCTC-CGCTAAGT-AATAGATTAAATTAATTCTTT  1141

seq1  AG-AACAAAACAACAACAAAAT-GAATTTC-TAAATAATTACAGA-TCAA  1192
       | ||||||||||| ||| ||| ||||||| |||||| |||| || ||||
seq2  GGAAACAAAACAAC-ACACAATGGAATTTCTTAAATATTTACCGAGTCAA  1190

seq1  ACAAATCAAGCTG---GCAATA-CACA  1215
        ||||||||| |   |||||| ||||
seq2  CAAAATCAAGCGGTGCGCAATATCACA  1217