BAC Information

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BAC

Clone NameB6Ng01-172D23
Chromosome17 (Build37)14 (Build37)
Map Location 35,626,908 - 35,627,12886,202,001 - 86,203,096
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneBtnl5, LOC624681, Btnl7, Notch4, Gpsm3, Pbx2, Ager, Rnf5, Agpat1, Egfl8, Ppt2, Prrt1, Fkbpl, Crebl1, Tnxb, EG632302, C4b, Stk19-ps1, Skiv2l-ps1, LOC100043024, Cyp21a2-ps, Cyp21a1, C4a, Stk19, Dom3z, Skiv2l, Rdbp, Cfb, C2, Zbtb12, Ehmt2, Slc44a4, Neu1, 1110038B12Rik, LOC667548, Hspa1b, Hspa1a, Hspa1l, Lsm2, Vars, D17H6S56E-3, Ng23, Msh5, Clic1, Ddah2, AU023871, G6b, Ly6g6c, Ly6g6d, Ly6g6e, Bat5, Ly6g5c, Ly6g5b, Csnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3, Bat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta, Nfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10
Downstream genePou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663, Ier3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10, LOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127, EG667827, LOC435525, LOC677333, LOC100043134, LOC625881, Rpp21, Trim39, H2-M10.2, H2-M10.1, H2-M10.3, Gm318, LOC100043140, LOC674152, LOC383240, LOC224752, H2-M10.4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-172D23.bB6Ng01-172D23.g
ACCGA000916GA000917
length1,0141,095
definitionB6Ng01-172D23.b B6Ng01-172D23.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(35,626,908 - 35,627,128)(86,202,001 - 86,203,096)
sequence
gaattccattttgaagaacatgaagtcattttagacatttatctcttgtc
atcgctaggacctgaatcatttatctgtctagatgatccatcctgtgtat
actacacacccagtagtcacttagaaacaaatcacttaacatattatctc
ctgtatagttttagtgcttgtgatcaagcaagacttagttacttaataat
gaccttcaaatatgaaagtaatgagtttgtcaagtcaaacatatcagcga
agctgaaagatgcttcttttaattataaacttataaaatcacaaggaaat
aaatatagcaaataacatttagtggagtatgttattacaatcactcattt
tagtctttattcatctcagttataagtgtttgtgtacaaagggccatagt
atacatgaattagaaccatccacatttccaggttcctactagggtcttgg
aatgtactcactgtggataaggacgtgtgatgtatacaaacatttactta
tgcttctttgtaacaacatttggatatacttggaaaaaatgtttgcttta
atgccgattttattttacttcttttccttcctttctttcctttcctttct
ttctttcctttcttttcttccttctttctttgtttcttcctttttgtttt
ttgagacaggatttctctctgttgccttggctgtcgaggaactcactctg
tagacaaggctggcctcgaactcacaaagatcagcctgcctccatctcct
gagtagtgggattcaagacgtgtgccagcaccacctagccacaattttta
ttcttttaaaacatttatttatttacctacttacttacttacttatttga
tatatatgagtgctcgatctgtatgtacctacatgccagaagagaacaac
agatcctattatagatggttgtgagccaccatgtgggttgctgggaactc
tggagaaaacagacagtgctcttaactgctgagtcatctatcccaacccc
agtttttttttttt
gaattctgtatttatacttaaagactctgagctgactcctagtgcattaa
cattctgtgcactgcaagtgtgctaatacaaagtcatgtacatgtatagg
tcaagggggtcatttggtttctctgggcattagcacaaagatacttgtgc
ctttcaatagagtctgtaattcatttaagtattacattttcagctctcaa
ttaggttttcaaatctcagtaatctgatgaattttctcaccatcatgtct
cacttttaataatttagtccctaactgcattccttgattttatgtgatgt
tatcatgacctactccgggcttcttaatattcttttcatatttatgtata
tagaatctttcacacacttagcattttagctatagatattgcataaatta
gaagtgtccctaaaactttacagccgaagtaatagttcatacatttttat
taaaaaatatgcgtgttattttaatttatttatgaataaaatagcctcaa
acttttaccatattctattctgaatgaatatatttaaagcatcatatcca
tagtgatcatctatttttaatgaagaatttatatgtaagtttatatcgtt
gattgaaaagtcttctaatggaaaaatcattgaagaaaataattcctgat
attaaattttattaccattttttatttttaaaaatcctatacttctaaaa
aagaaaatgactattttttaaataaaaattggcagaaggtgtactacaaa
tgaaatgaatattgagcatttggataatgtttagaaaagtcatggagtaa
ataaaccctttccaaagagtttagagaacaaaaatatattttgcttcaat
ttatttcattactaaaagagtagactgtaaacaataaataaatcctggga
caatggaaactttcttctactatcagaaaattgatcatgattttgcatat
aaaatcttatgaacagagaaacaattttttgaaggtattatgttttatag
cttacaaagtagtgagtttccataaggcgtttttatttattttttagcac
atttttaatagatattttctttatatacagtcacattccaaatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_35626908_35627128
seq2: B6Ng01-172D23.b_683_1022 (reverse)

seq1  AGCAGTTAAGAGCACTGACTGCTCT-TCCAGAGGTCCTGAGTCCAATTCC  49
      ||||||||||||||||| ||| | | |||||||             ||||
seq2  AGCAGTTAAGAGCACTGTCTGTTTTCTCCAGAG-------------TTCC  37

seq1  CAGCAA-CCACATGGTGGCTCACAACCATTTGTAATGGGATCGGATGCTC  98
      |||||| |||||||||||||||||||||| | |||| ||||| | || ||
seq2  CAGCAACCCACATGGTGGCTCACAACCATCTATAATAGGATCTGTTGTTC  87

seq1  TCTTCTGG--TGTGTCTGAATAGAGCTACAGTCTACTCATATACATAAAA  146
      ||||||||  |||   |  ||| || |  ||   ||||||||| || |||
seq2  TCTTCTGGCATGTAGGTACATACAGATCGAG--CACTCATATATATCAAA  135

seq1  TAAATAA----------ATCTTAAAAAAGAA-------AAAAGAAGAAAA  179
      ||| |||          |  | || ||| ||       ||||||| ||||
seq2  TAAGTAAGTAAGTAAGTAGGTAAATAAATAAATGTTTTAAAAGAATAAAA  185

seq1  A----------------------------------------------GAG  183
      |                                              |||
seq2  ATTGTGGCTAGGTGGTGCTGGCACACGTCTTGAATCCCACTACTCAGGAG  235

seq1  A-------------------------------------------------  184
      |                                                 
seq2  ATGGAGGCAGGCTGATCTTTGTGAGTTCGAGGCCAGCCTTGTCTACAGAG  285

seq1  ---------CGA---------CTACACAGAGAAACCCTGTCTCAAAAAAC  216
               |||         | ||| ||||||| |||||||||||||||
seq2  TGAGTTCCTCGACAGCCAAGGCAACAGAGAGAAATCCTGTCTCAAAAAAC  335

seq1  AAAAA  221
      |||||
seq2  AAAAA  340

seq1: chr14_86202001_86203096
seq2: B6Ng01-172D23.g_62_1156

seq1  GAATTCTGTATTTATACTTAAAGACTCTGAGCTGACTCCTAGTGCATTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTATTTATACTTAAAGACTCTGAGCTGACTCCTAGTGCATTAA  50

seq1  CATTCTGTGCACTGCAAGTGTGCTAATACAAAGTCATGTACATGTATAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTGTGCACTGCAAGTGTGCTAATACAAAGTCATGTACATGTATAGG  100

seq1  TCAAGGGGGTCATTTGGTTTCTCTGGGCATTAGCACAAAGATACTTGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGGGGTCATTTGGTTTCTCTGGGCATTAGCACAAAGATACTTGTGC  150

seq1  CTTTCAATAGAGTCTGTAATTCATTTAAGTATTACATTTTCAGCTCTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAATAGAGTCTGTAATTCATTTAAGTATTACATTTTCAGCTCTCAA  200

seq1  TTAGGTTTTCAAATCTCAGTAATCTGATGAATTTTCTCACCATCATGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTTTTCAAATCTCAGTAATCTGATGAATTTTCTCACCATCATGTCT  250

seq1  CACTTTTAATAATTTAGTCCCTAACTGCATTCCTTGATTTTATGTGATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTAATAATTTAGTCCCTAACTGCATTCCTTGATTTTATGTGATGT  300

seq1  TATCATGACCTACTCCGGGCTTCTTAATATTCTTTTCATATTTATGTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATGACCTACTCCGGGCTTCTTAATATTCTTTTCATATTTATGTATA  350

seq1  TAGAATCTTTCACACACTTAGCATTTTAGCTATAGATATTGCATAAATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATCTTTCACACACTTAGCATTTTAGCTATAGATATTGCATAAATTA  400

seq1  GAAGTGTCCCTAAAACTTTACAGCCGAAGTAATAGTTCATACATTTTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGTCCCTAAAACTTTACAGCCGAAGTAATAGTTCATACATTTTTAT  450

seq1  TAAAAAATATGCGTGTTATTTTAATTTATTTATGAATAAAATAGCCTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAATATGCGTGTTATTTTAATTTATTTATGAATAAAATAGCCTCAA  500

seq1  ACTTTTACCATATTCTATTCTGAATGAATATATTTAAAGCATCATATCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTACCATATTCTATTCTGAATGAATATATTTAAAGCATCATATCCA  550

seq1  TAGTGATCATCTATTTTTAATGAAGAATTTATATGTAAGTTTATATCGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGATCATCTATTTTTAATGAAGAATTTATATGTAAGTTTATATCGTT  600

seq1  GATTGAAAAGTCTTCTAATGGAAAAATCATTGAAGAAAATAATTCCTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAAAAGTCTTCTAATGGAAAAATCATTGAAGAAAATAATTCCTGAT  650

seq1  ATTAAATTTTATTACCATTTTTTATTTTTAAAAATCCTATACTTCTAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATTTTATTACCATTTTTTATTTTTAAAAATCCTATACTTCTAAAA  700

seq1  AAGAAAATGACTATTTTTTAAATAAAAATTGGCAGAAGGTGTACTACAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAATGACTATTTTTTAAATAAAAATTGGCAGAAGGTGTACTACAAA  750

seq1  TGAAATGAATATTGAGCATTTGGATAATGTTTAGAAAAGTCATGGAGTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGAATATTGAGCATTTGGATAATGTTTAGAAAAGTCATGGAGTAA  800

seq1  ATAAACCCTTTCCAAAGAGTTTAGAGAACAAAAATATATTTTGCTTCAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACCCTTTCCAAAGAGTTTAGAGAACAAAAATATATTTTGCTTCAAT  850

seq1  TTATTTCATTACTAAAAGAGTAGACTGTAAACAATAAATAAATCCT-GGA  899
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTATTTCATTACTAAAAGAGTAGACTGTAAACAATAAATAAATCCTGGGA  900

seq1  CAATGGAAACTTTCTTCTACTATCAGAAAATTGATCATGATTTTGCATAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGAAACTTTCTTCTACTATCAGAAAATTGATCATGATTTTGCATAT  950

seq1  AAAATCTTAATGAACAAGAGAAACAATTTTTTGAAGGTA-TATGTTTTAA  998
      |||||||| |||||| ||||||||||||||||||||||| ||||||||| 
seq2  AAAATCTT-ATGAAC-AGAGAAACAATTTTTTGAAGGTATTATGTTTTA-  997

seq1  TTAGCTTACAAAGTAGTGAGTTTCCATAAGGCGTTTTTATTTA-TTTTTA  1047
       |||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  -TAGCTTACAAAGTAGTGAGTTTCCATAAGGCGTTTTTATTTATTTTTTA  1046

seq1  GCACATTTTTATTAGATATTTTCTTTATATACATTCACATTTCAAATGC  1096
      ||||||||||| ||||||||||||||||||||| ||||||| |||||||
seq2  GCACATTTTTAATAGATATTTTCTTTATATACAGTCACATTCCAAATGC  1095