BAC Information

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BAC

Clone NameB6Ng01-173J06
Chromosome17 (Build37)
Map Location 32,299,036 - 32,475,850
singlet/doubletdoublet
Overlap geneNotch3, Abhd9, Brd4, LOC100043434, LOC100043433, Akap8, Akap8l
Upstream geneTff1, Tmprss3, Ubash3a, LOC100042906, Tsga2, EG667056, Slc37a1, Pde9a, Wdr4, 1500032D16Rik, Pknox1, Cbs, LOC623242, U2af1, Cryaa, Snf1lk, Hsf2bp, Rrp1b, LOC435518, Pdxk-ps
Downstream geneWiz, A430107D22Rik, Pglyrp2, 4732474A20Rik, EG208285, Cyp4f16, LOC667178, LOC677156, EG631304, Cyp4f15, LOC623809, 9030612M13Rik, Zfp811, 6030490I01Rik, LOC631266, BC066107, Cyp4f14, Cyp4f13, 6030422M01Rik, Zfp472, C920016K16Rik, 1700065O13Rik, 4921501E09Rik, Zfp563, Morc2b, LOC100038859, LOC100038860, LOC100043474, Zfp422-rs1, Olfr63, LOC100043468, Zfp81
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173J06.bB6Ng01-173J06.g
ACCGA001888GA001889
length725143
definitionB6Ng01-173J06.b B6Ng01-173J06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,475,130 - 32,475,850)(32,299,036 - 32,299,178)
sequence
gaattcaactgtagtaagcttaagttcatgctgtactagaagttactgta
gaaataataatagccctctttgctttttgtaggatatggaacttggaact
ctgggacaaatagaggcaagtatctagccatattcctcttctcaggactg
taccagtaatgtttcctagttgcctgtgtggccaagcaggacttagatgg
gtgtttctggggctggcacaggatatcctccttagagtgagaagggccta
cccagcctcgaggggctaagagttcccccagcttatttttgaccgaaaca
cctttttttttttctgtgtttgtctctgtctgctacttcctcccttttcc
ccaccccctctatttctgtccctctgtctccctaactgcaggctacgaga
actatggttatggctatggctatggccaggataacaccaccaactatggg
tatggtatggccacttcacactcttgggaaatggctagctctgacacaaa
tgcaaaccctagtgcctcgggtagcgccagtgccgattccgttttatcca
gaattaaccagcgcttagatatgatgccgcacttggagacagacatgata
caaggaggtgtgtacggctcaggtggtggagagaggtgagttggggtgct
gcccaagggccttagggtcctgtgtgcccagactcttttcctgaaatgtt
tcttgggatctacttccctctccct
cgttcctagataaacgtgtcgaagctcaaccctgtcgaagctcaaccctg
caagggtgtggtggacattcgaaccttggaggtgatgctctcaaccccct
acccagtcctgcaaggcggcgacgatgacacgccaggaggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_32475130_32475850
seq2: B6Ng01-173J06.b_43_767 (reverse)

seq1  AAGGAGAGGGAAGTAGATACCAAGAAACA-TTCAGG-AAAGAGTCT-GGC  47
      | |||||||||||||||| |||||||||| |||||| ||||||||| |||
seq2  AGGGAGAGGGAAGTAGATCCCAAGAAACATTTCAGGAAAAGAGTCTGGGC  50

seq1  ACACAGGACCCTAAGGCCC-TCGGCAGCACCCCAACTCACCTCTCTCCAC  96
      ||||||||||||||||||| | ||||||||||||||||||||||||||||
seq2  ACACAGGACCCTAAGGCCCTTGGGCAGCACCCCAACTCACCTCTCTCCAC  100

seq1  CACCTGAGCCGTACACACCTCCTTGTATCATGTCTGTCTCCAAGTGCGGC  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGAGCCGTACACACCTCCTTGTATCATGTCTGTCTCCAAGTGCGGC  150

seq1  ATCATATCTAAGCGCTGGTTAATTCTGGATAAAACGGAATCGGCACTGGC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATCTAAGCGCTGGTTAATTCTGGATAAAACGGAATCGGCACTGGC  200

seq1  GCTACCCGAGGCACTAGGGTTTGCATTTGTGTCAGAGCTAGCCATTTCCC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCCGAGGCACTAGGGTTTGCATTTGTGTCAGAGCTAGCCATTTCCC  250

seq1  AAGAGTGTGAAGTGGCCATACCATACCCATAGTTGGTGGTGTTATCCTGG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTGTGAAGTGGCCATACCATACCCATAGTTGGTGGTGTTATCCTGG  300

seq1  CCATAGCCATAGCCATAACCATAGTTCTCGTAGCCTGCAGTTAGGGAGAC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGCCATAGCCATAACCATAGTTCTCGTAGCCTGCAGTTAGGGAGAC  350

seq1  AGAGGGACAGAAATAGAGGGGGTGGGGAAAAGGGAGGAAGTAGCAGACAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGACAGAAATAGAGGGGGTGGGGAAAAGGGAGGAAGTAGCAGACAG  400

seq1  AGACAAACACAGAAAAAAAAAAAGGTGTTTCGGTCAAAAATAAGCTGGGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAACACAGAAAAAAAAAAAGGTGTTTCGGTCAAAAATAAGCTGGGG  450

seq1  GAACTCTTAGCCCCTCGAGGCTGGGTAGGCCCTTCTCACTCTAAGGAGGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCTTAGCCCCTCGAGGCTGGGTAGGCCCTTCTCACTCTAAGGAGGA  500

seq1  TATCCTGTGCCAGCCCCAGAAACACCCATCTAAGTCCTGCTTGGCCACAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTGTGCCAGCCCCAGAAACACCCATCTAAGTCCTGCTTGGCCACAC  550

seq1  AGGCAACTAGGAAACATTACTGGTACAGTCCTGAGAAGAGGAATATGGCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAACTAGGAAACATTACTGGTACAGTCCTGAGAAGAGGAATATGGCT  600

seq1  AGATACTTGCCTCTATTTGTCCCAGAGTTCCAAGTTCCATATCCTACAAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACTTGCCTCTATTTGTCCCAGAGTTCCAAGTTCCATATCCTACAAA  650

seq1  AAGCAAAGAGGGCTATTATTATTTCTACAGTAACTTCTAGTACAGCATGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAGAGGGCTATTATTATTTCTACAGTAACTTCTAGTACAGCATGA  700

seq1  ACTTAAGCTTACTACAGTTGAATTC  721
      |||||||||||||||||||||||||
seq2  ACTTAAGCTTACTACAGTTGAATTC  725

seq1: chr17_32299036_32299178
seq2: B6Ng01-173J06.g_71_213

seq1  CGTTCCTAGATAAACGTGTCGAAGCTCAACCCTGTCGAAGCTCAACCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCCTAGATAAACGTGTCGAAGCTCAACCCTGTCGAAGCTCAACCCTG  50

seq1  CAAGGGTGTGGTGGACATTCGAACCTTGGAGGTGATGCTCTCAACCCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGTGTGGTGGACATTCGAACCTTGGAGGTGATGCTCTCAACCCCCT  100

seq1  ACCCAGTCCTGCAAGGCGGCGACGATGACACGCCAGGAGGGGG  143
      |||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGTCCTGCAAGGCGGCGACGATGACACGCCAGGAGGGGG  143