BAC Information

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BAC

Clone NameB6Ng01-174M17
Chromosome17 (Build37)
Map Location 58,546,574 - 58,725,204
singlet/doubletdoublet
Overlap geneCntnap5c, LOC620408, EG545216
Upstream geneEmr1, EG224916, LOC674419
Downstream geneLOC668648, 2610034M16Rik, Nudt12, 4930505H01Rik, LOC100043537
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-174M17.bB6Ng01-174M17.g
ACCGA002773GA002774
length1,1011,171
definitionB6Ng01-174M17.b B6Ng01-174M17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,546,574 - 58,547,675)(58,724,046 - 58,725,204)
sequence
gaattctccagcaaatcagagtgctaagggaatgactgaagatgcacagg
ccagggagcatcctcatgaagcttaaggctgtgtcacaacttacttatta
tctaatgcatgcatacattaagaattggaagcagtgcattttactcatct
ttaaatatgtacaaagtgtgtgtgtgtatatgtgaatggataaggcttgg
gtgtcaggtctctccttcatgctgatttaggggcacagtctcccttgtgt
ctacatgtgatctagatatgtgaccagttactgagattacagattggagt
ctcagaattcagcttttaatgcaggctctcagattaaactcaggacatca
ttctacataatatttatttaggttccattcaaatgctttatttgaattta
tttctcactacagaaatctttttagtctacatagatgtgcattgcatatt
ctctttccctgtggttgacatttttgggtgaagtttacttttttgggttt
ttttttcctctttctagatccatttggagagagagatgagcgtgaaccgc
tcacaaatgcagtcccaagtgacttggcagtcattggaggtaatgtgtct
tcattactgaaagcaggaaagataactatgtccctgttctctgaaaaaag
ttacatgaagctttcctaacccataaacatccatcacccagaatcaggca
ctctctgtccaacccttagtctctccatgcatggtgtaagaaggagacac
tcttcctgtgccaggagctctgtggcctcattctgcctcagaatctgcag
ggagctgagttctcaaccaacagctggcacatttactgacaggcaggcag
cctacatcatgctcatttcatccagttttcacttctaaagcagaaacaaa
acacaccattaaaattatgtgtggaaagaagtcacattgaggcagacaga
tggaccagagctgcagtcattttcagtttttttttttcactaaattgctt
ggttagatctatggagcttgatgaacccatgtgactggagttccaaagct
agccattccatctgttggtgatatagagcttgccctgatcgactatagct
c

gaattcactgaattcctaactattcattggagtggaattattaagcacct
ggaagccctccttaacataccactaagtaattgtggttttcaaaacaaaa
caaaaatttaagttcaagattgcttattggtagggaatgaatagccatca
agtttttattttctttttttaatcttaatgacacagtaaatggaattgtt
ggaaatttgggggaaaggagacaattaaaatatttacttagagggccaga
gagaaagctcagtgattaaacacaactggtgtaaacctaaaacctgaagt
caatccccagaacctacatagcagaaaaagagaagtaatccctttaaatt
gtcccttgaccttcacaggtaccatggcacatgaagacgaatggacagat
acaaacattacatacattaaacaaatataaagactttaaattgtctttgt
ttttaattgtctaaattgtttttagttatctttttaagatagtctatcaa
cagctttacagtgatataaatcagttatctctaaagtgagttgtgatgtt
taagcaccaaatctggtttcattttctatacaggtgtctggacattactc
agtgtgagcaatgtgttgatagaaataatgctattaagtttagacatcag
taaccaatcaccaagaagactgagacaacacaaatcgtgaaatggagact
tccagggcaaagattccctgacaccaagtgtgtggatggctttcttttcc
ataggagacccaagtgggaataaggaatgctgacataaataggtataaat
atatacattattgctcatatataatttgcatctcagaaactgctgaataa
actcaccatttctaatcctttctgaactgaggctggctgattcaagtcag
ctattatgcctccaactcttctccaagctgactgattaagcttctcactg
aactgctctgctgaggctcaaattaactgtggaaatttgatctaatcatc
tgctcccttataatctcttgctcactccctctgccttgaaattcatgaaa
caaactgaacttccacttgccctatcacttcacttgttagagggaattga
aagtgtctgtaccttagcgtggtcggtagtcaccttggataacagagact
atagagggccccattccatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_58546574_58547675
seq2: B6Ng01-174M17.b_35_1135

seq1  GAATTCTCCAGCAAATCAGAGTGCTAAGGGAATGACTGAAGATGCACAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCAGCAAATCAGAGTGCTAAGGGAATGACTGAAGATGCACAGG  50

seq1  CCAGGGAGCATCCTCATGAAGCTTAAGGCTGTGTCACAACTTACTTATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGAGCATCCTCATGAAGCTTAAGGCTGTGTCACAACTTACTTATTA  100

seq1  TCTAATGCATGCATACATTAAGAATTGGAAGCAGTGCATTTTACTCATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATGCATGCATACATTAAGAATTGGAAGCAGTGCATTTTACTCATCT  150

seq1  TTAAATATGTACAAAGTGTGTGTGTGTATATGTGAATGGATAAGGCTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATATGTACAAAGTGTGTGTGTGTATATGTGAATGGATAAGGCTTGG  200

seq1  GTGTCAGGTCTCTCCTTCATGCTGATTTAGGGGCACAGTCTCCCTTGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAGGTCTCTCCTTCATGCTGATTTAGGGGCACAGTCTCCCTTGTGT  250

seq1  CTACATGTGATCTAGATATGTGACCAGTTACTGAGATTACAGATTGGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATGTGATCTAGATATGTGACCAGTTACTGAGATTACAGATTGGAGT  300

seq1  CTCAGAATTCAGCTTTTAATGCAGGCTCTCAGATTAAACTCAGGACATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAATTCAGCTTTTAATGCAGGCTCTCAGATTAAACTCAGGACATCA  350

seq1  TTCTACATAATATTTATTTAGGTTCCATTCAAATGCTTTATTTGAATTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACATAATATTTATTTAGGTTCCATTCAAATGCTTTATTTGAATTTA  400

seq1  TTTCTCACTACAGAAATCTTTTTAGTCTACATAGATGTGCATTGCATATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCACTACAGAAATCTTTTTAGTCTACATAGATGTGCATTGCATATT  450

seq1  CTCTTTCCCTGTGGTTGACATTTTTGGGTGAAGTTTACTTTTTTGGGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCCCTGTGGTTGACATTTTTGGGTGAAGTTTACTTTTTTGGGTTT  500

seq1  TTTTTTCCTCTTTCTAGATCCATTTGGAGAGAGAGATGAGCGTGAACCGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCCTCTTTCTAGATCCATTTGGAGAGAGAGATGAGCGTGAACCGC  550

seq1  TCACAAATGCAGTCCCAAGTGACTTGGCAGTCATTGGAGGTAATGTGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAATGCAGTCCCAAGTGACTTGGCAGTCATTGGAGGTAATGTGTCT  600

seq1  TCATTACTGAAAGCAGGAAAGATAACTATGTCCCTGTTCTCTGAAAAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTACTGAAAGCAGGAAAGATAACTATGTCCCTGTTCTCTGAAAAAAG  650

seq1  TTACATGAAGCTTTCCTAACCCATAAACATCCATCACCCAGAATCAGGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATGAAGCTTTCCTAACCCATAAACATCCATCACCCAGAATCAGGCA  700

seq1  CTCTCTGTCCAACCCTTAGTCTCTCCATGCATGGTGTAAGAAGGAGACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGTCCAACCCTTAGTCTCTCCATGCATGGTGTAAGAAGGAGACAC  750

seq1  TCTTCCTGTGCCAGGAGCTCTGTGGCCTCATTCTGCCTCAGAATCTGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTGTGCCAGGAGCTCTGTGGCCTCATTCTGCCTCAGAATCTGCAG  800

seq1  GGAGCTGAGTTCTCAACCAACAGCTGGCACATTTACTGACAGGCAGGCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTGAGTTCTCAACCAACAGCTGGCACATTTACTGACAGGCAGGCAG  850

seq1  CCTACATCATGCTCATTTCATCCAGTTTTCACTTCTAAAGCAGAAACAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACATCATGCTCATTTCATCCAGTTTTCACTTCTAAAGCAGAAACAAA  900

seq1  ACACACCAATAAAATTATGTGTGGAAAGAAGTCACATTGAGGCAGACAGA  950
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCATTAAAATTATGTGTGGAAAGAAGTCACATTGAGGCAGACAGA  950

seq1  TGGA-CAGAGCTGCAGTCATTTTCAGTTTTTTTTTTTCACTAAATTGCTT  999
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCAGAGCTGCAGTCATTTTCAGTTTTTTTTTTTCACTAAATTGCTT  1000

seq1  GGGTTAGATCTAATGAGCTTGATGAAACCCATGTGACTGAAGTTCCAAAG  1049
       |||||||||||  |||||||||| |||||||||||||| ||||||||||
seq2  -GGTTAGATCTATGGAGCTTGATG-AACCCATGTGACTGGAGTTCCAAAG  1048

seq1  CTAG-CATTCCATCTGTTTGTGGATATAGAGCTTG-CCTGATCGACTTAT  1097
      |||| ||||||||||||| || ||||||||||||| |||||||||| |||
seq2  CTAGCCATTCCATCTGTTGGT-GATATAGAGCTTGCCCTGATCGAC-TAT  1096

seq1  AGCTC  1102
      |||||
seq2  AGCTC  1101


seq1: chr17_58724046_58725204
seq2: B6Ng01-174M17.g_69_1239 (reverse)

seq1  AGATGGAA--GGGCCCTCTA-GTTCTCTGTAATCCAGGTGGAATACAGAC  47
      ||||||||  ||||||||||   ||||||| ||||| |  || ||| |||
seq2  AGATGGAATGGGGCCCTCTATAGTCTCTGTTATCCAAGGTGACTACCGAC  50

seq1  CACCCCTTAGTAC--ACACTTTCAA-TCCCTCTA--CAGTG-AGTG-TAG  90
      ||| |    ||||  |||||||||| ||||||||   |||| |||| |||
seq2  CACGCTAAGGTACAGACACTTTCAATTCCCTCTAACAAGTGAAGTGATAG  100

seq1  TGC-AGTGG-AGTTCAGTTTG-TTCATG-ATTTCAA-GCAGAGGGAGTTG  135
       || ||||| ||||||||||| |||||| ||||||| |||||||||||  
seq2  GGCAAGTGGAAGTTCAGTTTGTTTCATGAATTTCAAGGCAGAGGGAGT--  148

seq1  AAGCAAGAGAATAATAAGGAGGCAGATGATTAGATCAAATTTCCACAGTT  185
       |||||||| || ||||||  |||||||||||||||||||||||||||||
seq2  GAGCAAGAG-ATTATAAGGGAGCAGATGATTAGATCAAATTTCCACAGTT  197

seq1  AATTTGAGCCTCAGCAGAGCAGTTCAGTGAGAAGCTTAAATCAGTCAGCT  235
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AATTTGAGCCTCAGCAGAGCAGTTCAGTGAGAAGCTT-AATCAGTCAGCT  246

seq1  TGGAGAGGAGTTGGAGGCATAATAGCTGACTTGAATCAGCCAGCCTCAGT  285
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAAGAGTTGGAGGCATAATAGCTGACTTGAATCAGCCAGCCTCAGT  296

seq1  TCAGAAAGGATTAGAAATGGTGAGTTTATTCAGCAGTTTCTGAGATGCAA  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAGGATTAGAAATGGTGAGTTTATTCAGCAGTTTCTGAGATGCAA  346

seq1  ATTATATATGAGCAATAATGTATATATTTATACCTATTTATGTCAGCATT  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATATGAGCAATAATGTATATATTTATACCTATTTATGTCAGCATT  396

seq1  CCTTATT-CCACTTGGGTCTCCTATGGAAAAGAAAGCCATCCACACACTT  434
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATTCCCACTTGGGTCTCCTATGGAAAAGAAAGCCATCCACACACTT  446

seq1  GGTGTCAGGGAATCTTTGCCCTGGAAGTCTCCATTTCACGATTTGTGTTG  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCAGGGAATCTTTGCCCTGGAAGTCTCCATTTCACGATTTGTGTTG  496

seq1  TCTCAGTCTTCTTGGTGATTGGTTACTGATGTCTAAACTTAATAGCATTA  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTCTTCTTGGTGATTGGTTACTGATGTCTAAACTTAATAGCATTA  546

seq1  TTTCTATCAACACATTGCTCACACTGAGTAATGTCCAGACACCTGTATAG  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATCAACACATTGCTCACACTGAGTAATGTCCAGACACCTGTATAG  596

seq1  AAAATGAAACCAGATTTGGTGCTTAAACATCACAACTCACTTTAGAGATA  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAAACCAGATTTGGTGCTTAAACATCACAACTCACTTTAGAGATA  646

seq1  ACTGATTTATATCACTGTAAAGCTGTTGATAGACTATCTTAAAAAGATAA  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATTTATATCACTGTAAAGCTGTTGATAGACTATCTTAAAAAGATAA  696

seq1  CTAAAAACAATTTAGACAATTAAAAACAAAGACAATTTAAAGTCTTTATA  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAACAATTTAGACAATTAAAAACAAAGACAATTTAAAGTCTTTATA  746

seq1  TTTGTTTAATGTATGTAATGTTTGTATCTGTCCATTCGTCTTCATGTGCC  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTAATGTATGTAATGTTTGTATCTGTCCATTCGTCTTCATGTGCC  796

seq1  ATGGTACCTGTGAAGGTCAAGGGACAATTTAAAGGGATTACTTCTCTTTT  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTACCTGTGAAGGTCAAGGGACAATTTAAAGGGATTACTTCTCTTTT  846

seq1  TCTGCTATGTAGGTTCTGGGGATTGACTTCAGGTTTTAGGTTTACACCAG  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTATGTAGGTTCTGGGGATTGACTTCAGGTTTTAGGTTTACACCAG  896

seq1  TTGTGTTTAATCACTGAGCTTTCTCTCTGGCCCTCTAAGTAAATATTTTA  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTTAATCACTGAGCTTTCTCTCTGGCCCTCTAAGTAAATATTTTA  946

seq1  ATTGTCTCCTTTCCCCCAAATTTCCAACAATTCCATTTACTGTGTCATTA  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCTCCTTTCCCCCAAATTTCCAACAATTCCATTTACTGTGTCATTA  996

seq1  AGATTAAAAAAAGAAAATAAAAACTTGATGGCTATTCATTCCCTACCAAT  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAAAAAAAGAAAATAAAAACTTGATGGCTATTCATTCCCTACCAAT  1046

seq1  AAGCAATCTTGAACTTAAATTTTTGTTTTGTTTTGAAAACCACAATTACT  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAATCTTGAACTTAAATTTTTGTTTTGTTTTGAAAACCACAATTACT  1096

seq1  TAGTGGTATGTTAAGGAGGGCTTCCAGGTGCTTAATAATTCCACTCCAAT  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGTATGTTAAGGAGGGCTTCCAGGTGCTTAATAATTCCACTCCAAT  1146

seq1  GAATAGTTAGGAATTCAGTGAATTC  1159
      |||||||||||||||||||||||||
seq2  GAATAGTTAGGAATTCAGTGAATTC  1171


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