BAC Information

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BAC

Clone NameB6Ng01-175F09
Chromosome17 (Build37)
Map Location 68,514,371 - 68,628,940
singlet/doubletdoublet
Overlap geneD930040M24Rik
Upstream genePtprm, Lrrc30, Lama1, Arhgap28
Downstream geneEG622645, Epb4.1l3, 2410021H03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-175F09.bB6Ng01-175F09.g
ACCGA003167GA003168
length1,172823
definitionB6Ng01-175F09.b B6Ng01-175F09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,514,371 - 68,515,555)(68,628,118 - 68,628,940)
sequence
gaattcatctgctctcattagctgcctacccataggactgatttcttatt
aatgttttcccatggcactgagggcaaggagcccttatgctatgactttt
gatgaaaacaacccagctggaattgcttttaacttaacccactacatata
gatggctgtttattaacctgcatgtgcaaaagcacaggagaaacccgcct
cccaattatcctcagcctcactcactgtatgagctctgcctccagcccct
tcaaatgcttaggctcggtttccttctctgagtcacacgtaatgaagtgt
ttgctgaaagagtccacgtagctcccagatgtgtctcactctgaaaatat
cttaactggtatgccagaattttccaacataaagctaaaagctccacgtt
tatctaatatcttcaaagagagtattgtacacttagctataagcttcctg
gagattacagtgaaagaagaaaacaaaacaaaacaggagaaagtgtggct
tctgaccctgaggattggcagtctaggagaagctgcatagtcacagggaa
atgataggaagcgcgctgccaaggaggagaaacttgaacatgacatcatc
aggacagcctccccctcactgctcttcagtgtcacgtcggtaattatctt
tcctggaacgaaggccatgcatggggccttcgtgctttgaagataatgtt
caccaggaaggaaaatttttaaacatcatcttccaattctgagctcccgg
tatccgctcacacagaagcctctttccataccgagagctcccgtgcttga
gtgcagaaatcacttagcttttctcctgctttttttgtgaagctcttttg
ccaggtgtgagctctgaaagcaaaatcagacagtgaaagccactgcatga
aaggaaatcggagcaaacagctacctcctcccagcatttcttcacttgtg
cgttcatactaacaagcacagcataggaccatggagaaccaccaactgac
agttgggacccatggggggggggggtcacatccgaaattataatcttccc
aacttgacatcaaggacattcttattcatgggagaaatacttgaatcaga
tttttttttggcgtactttgctaatttattaacttagagtcatctgaagc
caataataactcatgctctatc

gaattcactgctgtacttaagaaaggaaatagactcttggttctaaccat
ccacagaaagtcagtgaatgaactgcaggctttgtgtatcaagatggcat
ctctaataattcacctttatggtggtaacgaccaggccaatagggtgtaa
tgacatgaaattaaagaatgttctctgcataaagtaaaagaaaaaagacc
cttgaattcctctttgatatctgactataatagtaacaaaatgtagggct
gaaggtcgggtctcatgtcttcaatcaactcaactctttgccagttactc
accaaatccctagctgtgaggaactttgtggatctgctttcctgtgtagc
tgtcaccttacggactcagagtcattgcagttttactagcagggtgtcta
atgtcccaggcagttgttgatctttggaagtatgtagcaacaaatccacg
cttatccccaaaaagtttcctggaggaagcagcaaagcagagctctgtgc
ttcactcagggcagtcaccacaaggatgcttgctgaaaggtcttggccct
gagttggggagtgcagaagcaatcgggggaggtgccactagaaaggcagt
tcccaaaaggcagaagcccgccaggcagaagggtgctgcaccccacaatc
acccccaaaatcactatctgaacaccactgctgcacatgtatgtgcttag
agagtggaaagactgggctcaccttccagattgcaactctcagacttaat
atggtcacttcaaaaggcaggaatcgatgggacaaggaactgggttttat
tggtggtggtgagttgttttgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_68514371_68515555
seq2: B6Ng01-175F09.b_44_1215

seq1  GAATTCATCTGCTCTCATTAGCTGCCTACCCATAGGACTGATTTCTTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTGCTCTCATTAGCTGCCTACCCATAGGACTGATTTCTTATT  50

seq1  AATGTTTTCCCATGGCACTGAGGGCAAGGAGCCCTTATGCTATGACTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTTCCCATGGCACTGAGGGCAAGGAGCCCTTATGCTATGACTTTT  100

seq1  GATGAAAACAACCCAGCTGGAATTGCTTTTAACTTAACCCACTACATATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAAACAACCCAGCTGGAATTGCTTTTAACTTAACCCACTACATATA  150

seq1  GATGGCTGTTTATTAACCTGCATGTGCAAAAGCACAGGAGAAACCCGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTGTTTATTAACCTGCATGTGCAAAAGCACAGGAGAAACCCGCCT  200

seq1  CCCAATTATCCTCAGCCTCACTCACTGTATGAGCTCTGCCTCCAGCCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATTATCCTCAGCCTCACTCACTGTATGAGCTCTGCCTCCAGCCCCT  250

seq1  TCAAATGCTTAGGCTCGGTTTCCTTCTCTGAGTCACACGTAATGAAGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGCTTAGGCTCGGTTTCCTTCTCTGAGTCACACGTAATGAAGTGT  300

seq1  TTGCTGAAAGAGTCCACGTAGCTCCCAGATGTGTCTCACTCTGAAAATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGAAAGAGTCCACGTAGCTCCCAGATGTGTCTCACTCTGAAAATAT  350

seq1  CTTAACTGGTATGCCAGAATTTTCCAACATAAAGCTAAAAGCTCCACGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACTGGTATGCCAGAATTTTCCAACATAAAGCTAAAAGCTCCACGTT  400

seq1  TATCTAATATCTTCAAAGAGAGTATTGTACACTTAGCTATAAGCTTCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAATATCTTCAAAGAGAGTATTGTACACTTAGCTATAAGCTTCCTG  450

seq1  GAGATTACAGTGAAAGAAGAAAACAAAACAAAACAGGAGAAAGTGTGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTACAGTGAAAGAAGAAAACAAAACAAAACAGGAGAAAGTGTGGCT  500

seq1  TCTGACCCTGAGGATTGGCAGTCTAGGAGAAGCTGCATAGTCACAGGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACCCTGAGGATTGGCAGTCTAGGAGAAGCTGCATAGTCACAGGGAA  550

seq1  ATGATAGGAAGCGCGCTGCCAAGGAGGAGAAACTTGAACATGACATCATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAGGAAGCGCGCTGCCAAGGAGGAGAAACTTGAACATGACATCATC  600

seq1  AGGACAGCCTCCCCCTCACTGCTCTTCAGTGTCACGTCGGTAATTATCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGCCTCCCCCTCACTGCTCTTCAGTGTCACGTCGGTAATTATCTT  650

seq1  TCCTGGAACGAAGGCCATGCATGGGGCCTTCGTGCTTTGAAGATAATGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGAACGAAGGCCATGCATGGGGCCTTCGTGCTTTGAAGATAATGTT  700

seq1  CACCAGGAAGGAAAATTTTTAAACATCATCTTCCAATTCTGAGCTCCCGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGGAAGGAAAATTTTTAAACATCATCTTCCAATTCTGAGCTCCCGG  750

seq1  TATCCGCTCACACAGAAGCCTCTTTCCATACCGAGAGCTCCCGTGCTTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCGCTCACACAGAAGCCTCTTTCCATACCGAGAGCTCCCGTGCTTGA  800

seq1  GTGCAGAAATCACTTAGCTTTTCTCCTGCTTTTTTTGTGAAGCTCTTTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGAAATCACTTAGCTTTTCTCCTGCTTTTTTTGTGAAGCTCTTTTG  850

seq1  CCAGGTGTGAGCTCTGAAAGCAAAATCAGACAGTGAAAGCCACTGCATGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTGTGAGCTCTGAAAGCAAAATCAGACAGTGAAAGCCACTGCATGA  900

seq1  AAGGAAATCGGAGCAAACAGCTACCTCCTCCCAGCATTTCTTCACTTGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAATCGGAGCAAACAGCTACCTCCTCCCAGCATTTCTTCACTTGTG  950

seq1  CGTTCATACTAACAAGCACAGCATAGGACCATGGAGAACCAACCAACTGA  1000
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CGTTCATACTAACAAGCACAGCATAGGACCATGGAGAACC-ACCAACTGA  999

seq1  CAGTTGGGACCCAT--GGGGGGGGGGTCACATCCGAAATTATAATCTTCC  1048
      ||||||||||||||  ||||||||||||||||||||||||||||||||||
seq2  CAGTTGGGACCCATGGGGGGGGGGGGTCACATCCGAAATTATAATCTTCC  1049

seq1  CCAAACTTTGAACATCAAGGACCATTCTTATTCAATGGGAGGAAATACTT  1098
      |  |||||   |||||||||| ||||||||||| |||||| |||||||||
seq2  C--AACTT--GACATCAAGGA-CATTCTTATTC-ATGGGA-GAAATACTT  1092

seq1  G-ATCAGATTTTTTTTTTTGCGTAGTTTGCTTATTTTATTTTACTATGAG  1147
      | |||||| ||||||||| ||||| |||||| ||||   || |||  |||
seq2  GAATCAGA-TTTTTTTTTGGCGTACTTTGCTAATTT--ATTAACTTAGAG  1139

seq1  CCCATCCTTGAGCACAAATAAATAACTCATGCTTTATC  1185
        ||||  |||   |||   ||||||||||||| ||||
seq2  -TCATC--TGAAGCCAA--TAATAACTCATGCTCTATC  1172


seq1: chr17_68628118_68628940
seq2: B6Ng01-175F09.g_66_888 (reverse)

seq1  AACAAAACAACTCACCACCACCAATAAAACCCAGTTCCTTGTCCCATCGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACAACTCACCACCACCAATAAAACCCAGTTCCTTGTCCCATCGA  50

seq1  TTCCTGCCTTTTGAAGTGACCATATTAAGTCTGAGAGTTGCAATCTGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCCTTTTGAAGTGACCATATTAAGTCTGAGAGTTGCAATCTGGAA  100

seq1  GGTGAGCCCAGTCTTTCCACTCTCTAAGCACATACATGTGCAGCAGTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGCCCAGTCTTTCCACTCTCTAAGCACATACATGTGCAGCAGTGGT  150

seq1  GTTCAGATAGTGATTTTGGGGGTGATTGTGGGGTGCAGCACCCTTCTGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGATAGTGATTTTGGGGGTGATTGTGGGGTGCAGCACCCTTCTGCC  200

seq1  TGGCGGGCTTCTGCCTTTTGGGAACTGCCTTTCTAGTGGCACCTCCCCCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGGGCTTCTGCCTTTTGGGAACTGCCTTTCTAGTGGCACCTCCCCCG  250

seq1  ATTGCTTCTGCACTCCCCAACTCAGGGCCAAGACCTTTCAGCAAGCATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTCTGCACTCCCCAACTCAGGGCCAAGACCTTTCAGCAAGCATCC  300

seq1  TTGTGGTGACTGCCCTGAGTGAAGCACAGAGCTCTGCTTTGCTGCTTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGTGACTGCCCTGAGTGAAGCACAGAGCTCTGCTTTGCTGCTTCCT  350

seq1  CCAGGAAACTTTTTGGGGATAAGCGTGGATTTGTTGCTACATACTTCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAAACTTTTTGGGGATAAGCGTGGATTTGTTGCTACATACTTCCAA  400

seq1  AGATCAACAACTGCCTGGGACATTAGACACCCTGCTAGTAAAACTGCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAACAACTGCCTGGGACATTAGACACCCTGCTAGTAAAACTGCAAT  450

seq1  GACTCTGAGTCCGTAAGGTGACAGCTACACAGGAAAGCAGATCCACAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTGAGTCCGTAAGGTGACAGCTACACAGGAAAGCAGATCCACAAAG  500

seq1  TTCCTCACAGCTAGGGATTTGGTGAGTAACTGGCAAAGAGTTGAGTTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCACAGCTAGGGATTTGGTGAGTAACTGGCAAAGAGTTGAGTTGAT  550

seq1  TGAAGACATGAGACCCGACCTTCAGCCCTACATTTTGTTACTATTATAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACATGAGACCCGACCTTCAGCCCTACATTTTGTTACTATTATAGT  600

seq1  CAGATATCAAAGAGGAATTCAAGGGTCTTTTTTCTTTTACTTTATGCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATCAAAGAGGAATTCAAGGGTCTTTTTTCTTTTACTTTATGCAGA  650

seq1  GAACATTCTTTAATTTCATGTCATTACACCCTATTGGCCTGGTCGTTACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTCTTTAATTTCATGTCATTACACCCTATTGGCCTGGTCGTTACC  700

seq1  ACCATAAAGGTGAATTATTAGAGATGCCATCTTGATACACAAAGCCTGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATAAAGGTGAATTATTAGAGATGCCATCTTGATACACAAAGCCTGCA  750

seq1  GTTCATTCACTGACTTTCTGTGGATGGTTAGAACCAAGAGTCTATTTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTCACTGACTTTCTGTGGATGGTTAGAACCAAGAGTCTATTTCCT  800

seq1  TTCTTAAGTACAGCAGTGAATTC  823
      |||||||||||||||||||||||
seq2  TTCTTAAGTACAGCAGTGAATTC  823


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