BAC Information

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BAC

Clone NameB6Ng01-175O13
Chromosome17 (Build37)
Map Location 33,826,336 - 33,974,015
singlet/doubletdoublet
Overlap geneMarch2, Rab11b, Angptl4, Ankrd47, Rps28, Ndufa7
Upstream geneCyp4f15, LOC623809, 9030612M13Rik, Zfp811, 6030490I01Rik, LOC631266, BC066107, Cyp4f14, Cyp4f13, 6030422M01Rik, Zfp472, C920016K16Rik, 1700065O13Rik, 4921501E09Rik, Zfp563, Morc2b, LOC100038859, LOC100038860, LOC100043474, Zfp422-rs1, Olfr63, LOC100043468, Zfp81, Zfp101, 1700029I08Rik, LOC100042953, Adamts10, Myo1f, Zfp414, Pram1, Hnrpm
Downstream geneCd320, LOC100042967, LOC630219, LOC100042970, BC051226, Daxx, Zbtb22, Tapbp, Rgl2, H2-Ke2, Wdr46, B3galt4, Rps18, Vps52, EG630499, LOC100042989, AA388235, H2-K1, LOC654352, Ring1, H2-Ke6, Slc39a7, Rxrb, Col11a2, LOC672505, H2-Pa, H2-Oa, Brd2, LOC100043003, LOC100043522, H2-DMa, H2-DMb2, H2-DMb1, Psmb9, Tap1, Psmb8, Tap2, H2-Ob, H2-Ab1, H2-Aa, H2-Eb1, H2-Eb2, H2-Ea, Btnl2, LOC100038862, LOC667442, BC051142, EG632126, Btnl5, LOC624681, Btnl7, Notch4, Gpsm3, Pbx2, Ager, Rnf5, Agpat1, Egfl8, Ppt2, Prrt1, Fkbpl, Crebl1, Tnxb, EG632302, C4b, Stk19-ps1, Skiv2l-ps1, LOC100043024, Cyp21a2-ps, Cyp21a1, C4a, Stk19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-175O13.bB6Ng01-175O13.g
ACCGA003588GA003589
length6931,012
definitionB6Ng01-175O13.b B6Ng01-175O13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,826,336 - 33,827,025)(33,973,022 - 33,974,015)
sequence
gaattctagcctgccagagctactcagagactgtgtgtgtgtttctgtgt
atgtgtgcactaaaattatattaaaaacttaatttatttaatgatcctgg
gaatctaacccagaactttgtctttgttattcaaatattcaatcactgaa
ctatatcaccagctaaaataacttttttgtttgtttgttttggtttttgg
tggttttttttttttttttttttttttggttttttttcgagacagggttt
ctctgtatagccctggctgtcctgaaacttactttgtagaccaggccggc
cttgaactcagaaatctgcctgcctctgcctcccgagtgctgggattaaa
ggcgtgcgccaccatacccagcttaatataacttttaaaaaatcatttat
tgtagccagagagatgattcagtggttaaaagcacttgctgttcttctag
aagacagaggttttgtttctagcagccacatgtcaactaacaaccatctc
taactccatctagttccaaggaatctcttggcctcttctggcttccttga
gcactgcatacacatggaacactcactttatatgcagggaaaacaaaaca
ctttttacacaagaataaaatctttacaaaatattttttaaaagatcatt
caccataaatcctgcccaggccagtggcgggggtggggggggg
gaattccctgagccctgagggaggggtttgaagaaatcatcccatagagg
actgactgttcaagttctctcacattctacacattggctgactgtgggaa
tctgtatcagcagtggggaaagtaattgctgacctttctaatccaaattt
ccctagtttataaaagtagctgtgcccacctagatcaaatgccaagcttt
ttggatatggagggcagaagaaagtatctcagaatgcccaaacccttccc
tatgaagtccctcagaggggcatctgatgcctattgagagctggcagaac
tcatgaaaagcctcacttattctgccctggttcccaggcccagaacccag
ccttgaatacctggaatcctcccccactcccagtacgcagtctggacaaa
ctccagagcacaatgctgggtgttagatcccacagaaatctggggcaaac
aactgactgagatgcctacaaccatatcaaagccagtgctgcttccaggc
tgcaagagtcctagctcctctcagcctctaacctaagcggctccgccctg
aagccccacgtcacctcacttctcctatacaacccagccatttcggctcc
atattctagattcttccctctctcctgctccccacttttctccctctttt
gtcttcctcttccactctcttctcatggcccaggttattctttctgtctg
gacctttccagatcctctggctaaattctccctcaaatctataataaaga
ccgtctcctcaaccatttcctagaagtcatgacctcacgctcattcactg
ggttaatgggtgtccactgttctttcctcagatagtttgggtgccacaca
aaacctctattgggcaagtgaacagagatgcagttgctagtgacattaag
gctagcccatgagctagaggcagagtatgggaatgaaaacagaacaatcc
gagccactttggaaaggcttaatgtagattcttgagtttaccggccagga
ctggggctacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_33826336_33827025
seq2: B6Ng01-175O13.b_43_735

seq1  GAATTCTAGCCTGCCAGAGCTACTCAGAGACTGTGTGTGTGTTTCTGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGCCTGCCAGAGCTACTCAGAGACTGTGTGTGTGTTTCTGTGT  50

seq1  ATGTGTGCACTAAAATTATATTAAAAACTTAATTTATTTAATGATCCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGCACTAAAATTATATTAAAAACTTAATTTATTTAATGATCCTGG  100

seq1  GAATCTAACCCAGAACTTTGTCTTTGTTATTCAAATATTCAATCACTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTAACCCAGAACTTTGTCTTTGTTATTCAAATATTCAATCACTGAA  150

seq1  CTATATCACCAGCTAAAATAACTTTTTTGTTTGTTTGTTTTGGTTTTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATCACCAGCTAAAATAACTTTTTTGTTTGTTTGTTTTGGTTTTTGG  200

seq1  TGGTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTTTTCGAGACAGGGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTTTTCGAGACAGGGTTT  250

seq1  CTCTGTATAGCCCTGGCTGTCCTGAAACTTACTTTGTAGACCAGGCCGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTATAGCCCTGGCTGTCCTGAAACTTACTTTGTAGACCAGGCCGGC  300

seq1  CTTGAACTCAGAAATCTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACTCAGAAATCTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAA  350

seq1  GGCGTGCGCCACCATACCCAGCTTAATATAACTTTTAAAAAATCATTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTGCGCCACCATACCCAGCTTAATATAACTTTTAAAAAATCATTTAT  400

seq1  TGTAGCCAGAGAGATGATTCAGTGGTTAAAAGCACTTGCTGTTCTTCTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCCAGAGAGATGATTCAGTGGTTAAAAGCACTTGCTGTTCTTCTAG  450

seq1  AAGACAGAGGTTTTGTTTCTAGCAGCCACATGTCAACTAACAACCATCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGAGGTTTTGTTTCTAGCAGCCACATGTCAACTAACAACCATCTC  500

seq1  TAACTCCATCTAGTTCCAAGGAATCTCTTGGCCTCTTCTGGCTTCCTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCCATCTAGTTCCAAGGAATCTCTTGGCCTCTTCTGGCTTCCTTGA  550

seq1  GCACTGCATACACATGGAACACTCAC-TTATATGCAGGGAAAACAAAACA  599
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GCACTGCATACACATGGAACACTCACTTTATATGCAGGGAAAACAAAACA  600

seq1  C-TTTTACACAAGAATAAAATCTTTACAAAATA-TTTTTAAAAGATCATT  647
      | ||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTTTTTACACAAGAATAAAATCTTTACAAAATATTTTTTAAAAGATCATT  650

seq1  CACCATAAATCCTGCCCAGGCCAGTGGCGGGGGTGGGGGGTGG  690
      |||||||||||||||||||||||||||||||||||||||| ||
seq2  CACCATAAATCCTGCCCAGGCCAGTGGCGGGGGTGGGGGGGGG  693

seq1: chr17_33973022_33974015
seq2: B6Ng01-175O13.g_66_1077 (reverse)

seq1  ATGTAG-CCCAGT-CTGGCC-GTAAACTCAGAATTCTACATT-AGCCTT-  45
      |||||| |||||| |||||| |||||||||  | |||||||| |||||| 
seq2  ATGTAGCCCCAGTCCTGGCCGGTAAACTCAAGAATCTACATTAAGCCTTT  50

seq1  -CCAAGT-GCTCGGATTG-TCTGTTTTCATT-CCATACTCTG-CTCTAGC  90
       | |||| |||||||||| |||||||||||| |||||||||| |||||||
seq2  CCAAAGTGGCTCGGATTGTTCTGTTTTCATTCCCATACTCTGCCTCTAGC  100

seq1  TCATGGGCTAGCCTT-ATGTCACTAGC-ACTGCATCTCTGTTCACTTGCC  138
      ||||||||||||||| ||||||||||| ||||||||||||||||||||||
seq2  TCATGGGCTAGCCTTAATGTCACTAGCAACTGCATCTCTGTTCACTTGCC  150

seq1  --ATAGAGGTTTTGTGTGGCACCC-AACTATCTGAGG-AAGAACAGTGGA  184
        |||||||||||||||||||||| |||||||||||| ||||||||||||
seq2  CAATAGAGGTTTTGTGTGGCACCCAAACTATCTGAGGAAAGAACAGTGGA  200

seq1  CACCCATTAA-CCAGTGAATGAGCGTGAGGTCATGACTTCTAGG-AATGG  232
      |||||||||| ||||||||||||||||||||||||||||||||| |||||
seq2  CACCCATTAACCCAGTGAATGAGCGTGAGGTCATGACTTCTAGGAAATGG  250

seq1  TTGAGGAGACGGTCTTTATTATAGATTTGAGGGAGAATTTAGCCAGAGGA  282
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGAGACGGTCTTTATTATAGATTTGAGGGAGAATTTAGCCAGAGGA  300

seq1  TCTGGAAAGGTCCAGACAGAAAGAATAACCTGGGCCATGAGAAGAGAGTG  332
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAAAGGTCCAGACAGAAAGAATAACCTGGGCCATGAGAAGAGAGTG  350

seq1  GAAGAGGAAGACAAAAGAGGGAGAAAAGTGGGGAGCAGGAGAGAGGGAAG  382
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGAAGACAAAAGAGGGAGAAAAGTGGGGAGCAGGAGAGAGGGAAG  400

seq1  AATCTAGAATATGGAGCCGAAATGGCTGGGTTGTATAGGAGAAGTGAGGT  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAGAATATGGAGCCGAAATGGCTGGGTTGTATAGGAGAAGTGAGGT  450

seq1  GACGTGGGGCTTCAGGGCGGAGCCGCTTAGGTTAGAGGCTGAGAGGAGCT  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTGGGGCTTCAGGGCGGAGCCGCTTAGGTTAGAGGCTGAGAGGAGCT  500

seq1  AGGACTCTTGCAGCCTGGAAGCAGCACTGGCTTTGATATGGTTGTAGGCA  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTCTTGCAGCCTGGAAGCAGCACTGGCTTTGATATGGTTGTAGGCA  550

seq1  TCTCAGTCAGTTGTTTGCCCCAGATTTCTGTGGGATCTAACACCCAGCAT  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTCAGTTGTTTGCCCCAGATTTCTGTGGGATCTAACACCCAGCAT  600

seq1  TGTGCTCTGGAGTTTGTCCAGACTGCGTACTGGGAGTGGGGGAGGATTCC  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTCTGGAGTTTGTCCAGACTGCGTACTGGGAGTGGGGGAGGATTCC  650

seq1  AGGTATTCAAGGCTGGGTTCTGGGCCTGGGAACCAGGGCAGAATAAGTGA  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATTCAAGGCTGGGTTCTGGGCCTGGGAACCAGGGCAGAATAAGTGA  700

seq1  GGCTTTTCATGAGTTCTGCCAGCTCTCAATAGGCATCAGATGCCCCTCTG  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTCATGAGTTCTGCCAGCTCTCAATAGGCATCAGATGCCCCTCTG  750

seq1  AGGGACTTCATAGGGAAGGGTTTGGGCATTCTGAGATACTTTCTTCTGCC  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACTTCATAGGGAAGGGTTTGGGCATTCTGAGATACTTTCTTCTGCC  800

seq1  CTCCATATCCAAAAAGCTTGGCATTTGATCTAGGTGGGCACAGCTACTTT  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATATCCAAAAAGCTTGGCATTTGATCTAGGTGGGCACAGCTACTTT  850

seq1  TATAAACTAGGGAAATTTGGATTAGAAAGGTCAGCAATTACTTTCCCCAC  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAACTAGGGAAATTTGGATTAGAAAGGTCAGCAATTACTTTCCCCAC  900

seq1  TGCTGATACAGATTCCCACAGTCAGCCAATGTGTAGAATGTGAGAGAACT  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGATACAGATTCCCACAGTCAGCCAATGTGTAGAATGTGAGAGAACT  950

seq1  TGAACAGTCAGTCCTCTATGGGATGATTTCTTCAAACCCCTCCCTCAGGG  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGTCAGTCCTCTATGGGATGATTTCTTCAAACCCCTCCCTCAGGG  1000

seq1  CTCAGGGAATTC  994
      ||||||||||||
seq2  CTCAGGGAATTC  1012