BAC Information

Click to search

BAC

Clone NameB6Ng01-176B12
Chromosome17 (Build37)
Map Location 39,895,965 - 39,897,137
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043297, LOC100043300, EG668200
Downstream geneLOC672857, LOC627695, LOC634967, Pgk2, Crisp3, Crisp1, LOC668229, LOC100043756, EG433107, EG619517
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176B12.bB6Ng01-176B12.g
ACCGA003725GA003726
length1,152887
definitionB6Ng01-176B12.b B6Ng01-176B12.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccatcccctgcctaaggtaccacctaccacagcccctacaagaga
agcatggtcaatacacatgtaagcaatgtcccaagcaactgaccttcagg
ctaaactcctcccctgctacccagcaatagtgaagaccataaaaagatat
tgtgtgaatttggttttgtcatggaatactttggtttctccatctatggg
aattaagagtttttctggttatagtagcctgggctagcatttatgttctc
ttagggtctgtataacatctgtgcaagatcttctggcttccatagtctct
ggtgagaagtcttgtgtaattctaataggcttgcctttatattttacttg
acattttcccttatggcttttaatattctgtctttatttagtgcattcgt
ttttctgattattacatgtcagcaggaatttcttttctggtccagtctat
ttggagtctatctttccataaaaaggcgttctcaacatcccactcctttg
tcctctcacctctcattgctctctcctcttccctttctctttgtcttctt
tcctctcctctctctttctttctttctctctagcctttcttctccccccc
tctctctctatttctctctctccttctcctcctccttctcctcctcctcc
tcctcctcctcctcttcccttctctctttcccctgcatttctataataaa
gctcttaatccatagagtgtctcctctgcccttcaagcttcactgtgtac
tctggtcagtgttgggaacctctcttctcttatccctctctcccataccc
ctgggtctacatggtgtgaccctggggccctcaggtcatgaactgcccct
tctccacccctcacagcatgggtcagaggattagatgctcactcaggcct
catggaaagcctcccagcagtccccccgcccccaatgcctgtgtctgtct
gctagagcacagaacctctggctggatttgggcccctttttctttcccct
cttcccaggggtctcctcaggtcccaaattcttttttgtccacatgtctg
atctgaaacaaggtatgtctaaagctgtgttgcttctgcagtctcctttt
acatatgacgctactaagacatacaacacagtaccactgtaacacaaggt
tt

gaattccagaaattacttctttatttcttccctgaccaagtcatcattga
ttagatagttgtttagtttctatgagtatgtgggctttctgttggttttg
ttgttattgaagtccactcttagaccatgatgatctgaaaaaattcatgg
gattatctcagtcttcttttatctgtagaagcttgttttgtgttttatta
tatggtcaattttggagaaggttacaagagatgctgaaagaagattcatt
cttttgtttcgaggtaatagtttttgtaaatatctgtcaaatgtatttgg
tttataaattctgttaatttcactgtgtctctgttctatgtctgattcaa
tcacctgtccattggtaagattgatttactgaggtttccaactattattt
gtgaggttcaatgtgtattttgagctttagaaacgtttttgttttttttt
tttttttttttttttttaatttgggtgcccttgaaattgtagcatagctg
ttcaaaattcaaactacatcttggtaaattttttctttgatgactataaa
gtgtgcttccccatctcttatgtttactttggttgaaagttcattttatt
agatattaaaatgactattccagctcgttttttgagaccatttgcttgga
aatatttttgtagccctttaattcgaggtagtttctatctttattgctga
agtgtggtttttctatgcaggaaaatgctggatacagtattttttccatt
ctgtatgtgtgtcttttttttctttctatttttttaaaggaattgaatgt
gttaatgttaaagagatattaagactggtgattgttagttcctgtcattt
tgtggtggaaggagatatgtgttatttatggatgtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_39895965_39897137
seq2: B6Ng01-176B12.b_46_1197

seq1  GAATTCCATCCCCTGCCTAAGGTACCACCTACCACAGCCCCTACAAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCCCCTGCCTAAGGTACCACCTACCACAGCCCCTACAAGAGA  50

seq1  AGCATGGTCAATACACATGTAAGCAATGTCCCAAGCAACTGACCTTCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGGTCAATACACATGTAAGCAATGTCCCAAGCAACTGACCTTCAGG  100

seq1  CTAAACTCCTCCCCTGCTACCCAGCAATAGTGAAGACCATAAAAAGATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACTCCTCCCCTGCTACCCAGCAATAGTGAAGACCATAAAAAGATAT  150

seq1  TGTGTGAATTTGGTTTTGTCATGGAATACTTTGGTTTCTCCATCTATGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGAATTTGGTTTTGTCATGGAATACTTTGGTTTCTCCATCTATGGG  200

seq1  AATTAAGAGTTTTTCTGGTTATAGTAGCCTGGGCTAGCATTTATGTTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGAGTTTTTCTGGTTATAGTAGCCTGGGCTAGCATTTATGTTCTC  250

seq1  TTAGGGTCTGTATAACATCTGTGCAAGATCTTCTGGCTTCCATAGTCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGTCTGTATAACATCTGTGCAAGATCTTCTGGCTTCCATAGTCTCT  300

seq1  GGTGAGAAGTCTTGTGTAATTCTAATAGGCTTGCCTTTATATTTTACTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGAAGTCTTGTGTAATTCTAATAGGCTTGCCTTTATATTTTACTTG  350

seq1  ACATTTTCCCTTATGGCTTTTAATATTCTGTCTTTATTTAGTGCATTCGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTCCCTTATGGCTTTTAATATTCTGTCTTTATTTAGTGCATTCGT  400

seq1  TTTTCTGATTATTACATGTCAGCAGGAATTTCTTTTCTGGTCCAGTCTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGATTATTACATGTCAGCAGGAATTTCTTTTCTGGTCCAGTCTAT  450

seq1  TTGGAGTCTATCTTTCCATAAAAAGGCGTTCTCAACATCCCACTCCTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGTCTATCTTTCCATAAAAAGGCGTTCTCAACATCCCACTCCTTTG  500

seq1  TCCTCTCACCTCTCATTGCTCTCTCCTCTTCCCTTTCTCTTTGTCTTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCACCTCTCATTGCTCTCTCCTCTTCCCTTTCTCTTTGTCTTCTT  550

seq1  TCCTCTCCTCTCTCTTTCTTTCTTTCTCTCTAGCCTTTCTTCTCCCCCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCCTCTCTCTTTCTTTCTTTCTCTCTAGCCTTTCTTCTCCCCCCC  600

seq1  TCTCTCTCTATTTCTCTCTCTCCTTCTCCTCCTCCTTCTCCTCCTCCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTATTTCTCTCTCTCCTTCTCCTCCTCCTTCTCCTCCTCCTCC  650

seq1  TCCTCCTCCTCCTCTTCCCTTCTCTCTTTCCCCTGCATTTCTATAATAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTCCTCCTCTTCCCTTCTCTCTTTCCCCTGCATTTCTATAATAAA  700

seq1  GCTCTTAATCCATAGAGTGTCTCCTCTGCCCTTCAAGCTTCACTGTGTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTAATCCATAGAGTGTCTCCTCTGCCCTTCAAGCTTCACTGTGTAC  750

seq1  TCTGGTCAGTGTTGGGAACCTCTCTTCTCTTATCCCTCTCTCCCATACCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTCAGTGTTGGGAACCTCTCTTCTCTTATCCCTCTCTCCCATACCC  800

seq1  CTGGGTCTACATGGTGTGACCCTGGGGCCCTCAGGTCATGAACTGCCCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTCTACATGGTGTGACCCTGGGGCCCTCAGGTCATGAACTGCCCCT  850

seq1  TCTCCACCCCTCACAGCATGGGTCAGAGGATTAGATGCTCACTCAGGGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TCTCCACCCCTCACAGCATGGGTCAGAGGATTAGATGCTCACTCA-GGCC  899

seq1  TCATGGAAAGCCTCCCAGCAGTCCCCCCGCCCCCCAATGCCTGTGTCTGT  950
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCATGGAAAGCCTCCCAGCAGTCCCCCCG-CCCCCAATGCCTGTGTCTGT  948

seq1  CTGCTAAGAGCACAGAACCTCTGGCTGGATTTTGGGCCCCTTTTTCTTTC  1000
      ||||| ||||||||||||||||||||||| ||||||||||||||||||| 
seq2  CTGCT-AGAGCACAGAACCTCTGGCTGGA-TTTGGGCCCCTTTTTCTTT-  995

seq1  CCCCTCTTCCCCAGGGGTCTCCTCAGGGTCCCCAATTCTTTTTTGTTCCC  1050
      |||||||| |||||||||||||||| |||||| |||||||||||||   |
seq2  CCCCTCTT-CCCAGGGGTCTCCTCA-GGTCCCAAATTCTTTTTTGT---C  1040

seq1  AACATGTCTGGATCCTGAAACAGGGTATGTCCTAGAAGCTGTGTTGCTTC  1100
       |||||||| ||| |||||||| ||||||| ||| |||||||||||||||
seq2  CACATGTCT-GAT-CTGAAACAAGGTATGT-CTA-AAGCTGTGTTGCTTC  1086

seq1  TGCAGTCCTCCTTTTTACATATGACGCTACTAAGACTACCCAACACAGGT  1150
      |||||| |||| |||||||||||||||||||||||| |  ||||||||  
seq2  TGCAGT-CTCC-TTTTACATATGACGCTACTAAGAC-ATACAACACAG--  1131

seq1  TACCACTGTAAACACAAGTGTTT  1173
      ||||||||| |||||||| ||||
seq2  TACCACTGT-AACACAAG-GTTT  1152


| Home | SequenceCutter | Blast | Download |