BAC Information

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BAC

Clone NameB6Ng01-176I19
Chromosome17 (Build37)
Map Location 66,491,542 - 66,613,315
singlet/doubletdoublet
Overlap geneDdx11, LOC100043599, LOC100043875
Upstream geneE130009J12Rik, LOC668655, LOC674701, Vapa, Txndc2, Rab31, Ppp4r1, Ralbp1, LOC100043873, LOC100043592, Twsg1, Ankrd12, 5430411C19Rik, Ndufv2, ORF19
Downstream gene1110012J17Rik, LOC100043876, Rab12, 9130404H23Rik, Ptprm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176I19.bB6Ng01-176I19.g
ACCGA004057GA004058
length6471,124
definitionB6Ng01-176I19.b B6Ng01-176I19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,612,669 - 66,613,315)(66,491,542 - 66,492,662)
sequence
gaattctttgcagctaataatcactcctttctgtgcctacagctcctctt
ctctgttcccatgtctgactcagttcccttcttaagacatgcgtgcccaa
atgctctttgtactgaccagttcaagactaaagaaaaagtacttaaatcc
gttgtctgtgcttcttccaacccagagagagtgagcgttaacacacacgt
gccaagccgcagagcctttgtaacgctggggtcaaccacagtttgaagcc
tcttattgataagtttccttggtcccctgaaggaccttggcccacagctt
agaggaagtgctaccatttgtatcacaggttcagtctaggtggagtgtaa
agggtatgagagcagagtgctttactgggtagacatcccaggctgaagtg
accctgggcaaagtctctccacactcctttctctgcctccttgtggagac
atgagcaagggactgcattagctacttttgcatcactgcaatcaaactag
ctgatgggaacaaggaggaagcaatggtttcaggaggaatctgtctgtcc
tagtaggtagactcagtagaaccacttatctgtagaggtgcgcatataaa
gtggcgactaggaatctgggaaagtggcaggaataggagaaaggggg
gaattcaggtgtgcctatgccacagtgtttgtcaggctagaggacaagta
cccatgttagtccttgctttttaccctgtttgagatagggtctcttgatt
gttttgccactgtgtgtgcctggttctcaggcttctggggtgtttcttgt
ctctgcatctcatttctcagtaagagcattgtggctatagacttagtgct
gagtctggctttttggtgttctctgagtattccaactctggtttttgtgc
ttgtgtggcaagcttgtgagccgtctttatcgcccttggaattgttttta
acttacctcttcttcaaggcccagtctgcatatgggcacgtggaaggaag
cagcatgcagctagtgcctttttaaaaaaattattattattatttttttg
cctgaatgcatgtctgaacaccacatgtatgcatgcctggtgcccaaaga
ggtcataagaagggagatgtgctgaagtggaattacagatggttgtgagc
catcatgtaggtcccaggttttctaggagaacagccagtgctctcacagc
tgagccaaccttttcatccttgagatcttgtcttgaactcccttcaggtg
acccgaagagtgggaacatctgtggtgaggctgtggtttgaggtctccac
aatctaaattaaatctagatgggaaccaaggaagagctgagaacgttatt
aaatctagattatctagatttgatagatctatcgagagcttcagctagtg
acaggggcctggtgccaggcaaagctcctagcgtcccttcagggtctgtg
gtaattcaaagcctttagctcaaccaagaccaggctacctctcgtggtcc
actgcctcatcctttgttacgtggctttgggttcctctgagggggcagtg
agccatattccttcagtggtgtgggggtggcccgtctgaatttagccccc
agtttgcttcccttctcacagtctgtcatggttctgcaggtgcaggcggt
acttgagaagagcatgctcagcaggagttaccttttcccgttgctaagca
ggagccaggttaactccctgctgcttacttcgcttgccgagattcttggc
ttcctgattgcaactgtccatagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_66612669_66613315
seq2: B6Ng01-176I19.b_46_692 (reverse)

seq1  CCCCCTTTCTCCTATTCCTGCCACTTTCCCAGATTCCTAGTCGCCACTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTTTCTCCTATTCCTGCCACTTTCCCAGATTCCTAGTCGCCACTTT  50

seq1  ATATGCGCACCTCTACAGATAAGTGGTTCTACTGAGTCTACCTACTAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCGCACCTCTACAGATAAGTGGTTCTACTGAGTCTACCTACTAGGA  100

seq1  CAGACAGATTCCTCCTGAAACCATTGCTTCCTCCTTGTTCCCATCAGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGATTCCTCCTGAAACCATTGCTTCCTCCTTGTTCCCATCAGCTA  150

seq1  GTTTGATTGCAGTGATGCAAAAGTAGCTAATGCAGTCCCTTGCTCATGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGATTGCAGTGATGCAAAAGTAGCTAATGCAGTCCCTTGCTCATGTC  200

seq1  TCCACAAGGAGGCAGAGAAAGGAGTGTGGAGAGACTTTGCCCAGGGTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAAGGAGGCAGAGAAAGGAGTGTGGAGAGACTTTGCCCAGGGTCAC  250

seq1  TTCAGCCTGGGATGTCTACCCAGTAAAGCACTCTGCTCTCATACCCTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCCTGGGATGTCTACCCAGTAAAGCACTCTGCTCTCATACCCTTTA  300

seq1  CACTCCACCTAGACTGAACCTGTGATACAAATGGTAGCACTTCCTCTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCACCTAGACTGAACCTGTGATACAAATGGTAGCACTTCCTCTAAG  350

seq1  CTGTGGGCCAAGGTCCTTCAGGGGACCAAGGAAACTTATCAATAAGAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGCCAAGGTCCTTCAGGGGACCAAGGAAACTTATCAATAAGAGGC  400

seq1  TTCAAACTGTGGTTGACCCCAGCGTTACAAAGGCTCTGCGGCTTGGCACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACTGTGGTTGACCCCAGCGTTACAAAGGCTCTGCGGCTTGGCACG  450

seq1  TGTGTGTTAACGCTCACTCTCTCTGGGTTGGAAGAAGCACAGACAACGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTTAACGCTCACTCTCTCTGGGTTGGAAGAAGCACAGACAACGGA  500

seq1  TTTAAGTACTTTTTCTTTAGTCTTGAACTGGTCAGTACAAAGAGCATTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTACTTTTTCTTTAGTCTTGAACTGGTCAGTACAAAGAGCATTTG  550

seq1  GGCACGCATGTCTTAAGAAGGGAACTGAGTCAGACATGGGAACAGAGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACGCATGTCTTAAGAAGGGAACTGAGTCAGACATGGGAACAGAGAAG  600

seq1  AGGAGCTGTAGGCACAGAAAGGAGTGATTATTAGCTGCAAAGAATTC  647
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCTGTAGGCACAGAAAGGAGTGATTATTAGCTGCAAAGAATTC  647

seq1: chr17_66491542_66492662
seq2: B6Ng01-176I19.g_67_1190

seq1  GAATTCAGGTGTGCCTATGCCACAGTGTTTGTCAGGCTAGAGGACAAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTGTGCCTATGCCACAGTGTTTGTCAGGCTAGAGGACAAGTA  50

seq1  CCCATGTTAGTCCTTGCTTTTTACCCTGTTTGAGATAGGGTCTCTTGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGTTAGTCCTTGCTTTTTACCCTGTTTGAGATAGGGTCTCTTGATT  100

seq1  GTTTTGCCACTGTGTGTGCCTGGTTCTCAGGCTTCTGGGGTGTTTCTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGCCACTGTGTGTGCCTGGTTCTCAGGCTTCTGGGGTGTTTCTTGT  150

seq1  CTCTGCATCTCATTTCTCAGTAAGAGCATTGTGGCTATAGACTTAGTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCATCTCATTTCTCAGTAAGAGCATTGTGGCTATAGACTTAGTGCT  200

seq1  GAGTCTGGCTTTTTGGTGTTCTCTGAGTATTCCAACTCTGGTTTTTGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTGGCTTTTTGGTGTTCTCTGAGTATTCCAACTCTGGTTTTTGTGC  250

seq1  TTGTGTGGCAAGCTTGTGAGCCGTCTTTATCGCCCTTGGAATTGTTTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGGCAAGCTTGTGAGCCGTCTTTATCGCCCTTGGAATTGTTTTTA  300

seq1  ACTTACCTCTTCTTCAAGGCCCAGTCTGCATATGGGCACGTGGAAGGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACCTCTTCTTCAAGGCCCAGTCTGCATATGGGCACGTGGAAGGAAG  350

seq1  CAGCATGCAGCTAGTGCCTTTTTAAAAAAATTATTATTATTATTTTTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATGCAGCTAGTGCCTTTTTAAAAAAATTATTATTATTATTTTTTTG  400

seq1  CCTGAATGCATGTCTGAACACCACATGTATGCATGCCTGGTGCCCAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAATGCATGTCTGAACACCACATGTATGCATGCCTGGTGCCCAAAGA  450

seq1  GGTCATAAGAAGGGAGATGTGCTGAAGTGGAATTACAGATGGTTGTGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATAAGAAGGGAGATGTGCTGAAGTGGAATTACAGATGGTTGTGAGC  500

seq1  CATCATGTAGGTCCCAGGTTTTCTAGGAGAACAGCCAGTGCTCTCACAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATGTAGGTCCCAGGTTTTCTAGGAGAACAGCCAGTGCTCTCACAGC  550

seq1  TGAGCCAACCTTTTCATCCTTGAGATCTTGTCTTGAACTCCCTTCAGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCAACCTTTTCATCCTTGAGATCTTGTCTTGAACTCCCTTCAGGTG  600

seq1  ACCCGAAGAGTGGGAACATCTGTGGTGAGGCTGTGGTTTGAGGTCTCCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGAAGAGTGGGAACATCTGTGGTGAGGCTGTGGTTTGAGGTCTCCAC  650

seq1  AATCTAAATTAAATCTAGATGGGAACCAAGGAAGAGCTGAGAACGTTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAAATTAAATCTAGATGGGAACCAAGGAAGAGCTGAGAACGTTATT  700

seq1  AAATCTAGATTATCTAGATTTGATAGATCTATCGAGAGCTTCAGCTAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTAGATTATCTAGATTTGATAGATCTATCGAGAGCTTCAGCTAGTG  750

seq1  ACAGGGGCCTGGTGCCAGGCAAAGCTCCTAGCGTCCCTTCAGGGTCTGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGGCCTGGTGCCAGGCAAAGCTCCTAGCGTCCCTTCAGGGTCTGTG  800

seq1  GTAATTCAAAGCCTTTAGCTCAACCAAGACCAGGCTACCTCTCGTGGTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTCAAAGCCTTTAGCTCAACCAAGACCAGGCTACCTCTCGTGGTCC  850

seq1  ACTGCCTCATCCTTTGTTACGTGGCTTTGGGTTCCTCTGAGGGGGCAGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCTCATCCTTTGTTACGTGGCTTTGGGTTCCTCTGAGGGGGCAGTG  900

seq1  AGCCATATTCCTTCAGTGGTGT-GGGGTGG-CCGTCTGAATTTAGCCCCC  948
      |||||||||||||||||||||| ||||||| |||||||||||||||||||
seq2  AGCCATATTCCTTCAGTGGTGTGGGGGTGGCCCGTCTGAATTTAGCCCCC  950

seq1  AGTTTGCTT-CCTTCTCACAGTCTGTCATGGTTCTGCAGGTGCA-GCGGT  996
      ||||||||| |||||||||||||||||||||||||||||||||| |||||
seq2  AGTTTGCTTCCCTTCTCACAGTCTGTCATGGTTCTGCAGGTGCAGGCGGT  1000

seq1  ACTTGGAGAAGAGCATGCTCAGCAGGAAGGTACC-TTTCCCGTTGCTTAA  1045
      |||| ||||||||||||||||||||| || |||| ||||||||||| |||
seq2  ACTT-GAGAAGAGCATGCTCAGCAGG-AGTTACCTTTTCCCGTTGC-TAA  1047

seq1  GCAAGGAGCCAGG-GAAC-CCCTGCTGCCTTACTCCGCTGCCCGAGGATT  1093
      || ||||||||||  ||| |||||||| |||||| ||||  |||| ||||
seq2  GC-AGGAGCCAGGTTAACTCCCTGCTG-CTTACTTCGCTTGCCGA-GATT  1094

seq1  CTTGGCTT-CTGATTGC-ACTGTCCATAGT  1121
      |||||||| |||||||| ||||||||||||
seq2  CTTGGCTTCCTGATTGCAACTGTCCATAGT  1124