BAC Information

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BAC

Clone NameB6Ng01-176O13
Chromosome17 (Build37)
Map Location 63,991,411 - 63,992,465
singlet/doubletsinglet
Overlap genenone
Upstream geneEfna5, Fbxl17, Ppia-ps17_1026.1, LOC638867
Downstream geneLOC668677, A930002H24Rik, Fert2, LOC669778, Pja2, LOC100043582, Man2a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176O13.bB6Ng01-176O13.g
ACCGA004321GA004322
length1,1661,154
definitionB6Ng01-176O13.b B6Ng01-176O13.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcgattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctggatcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatcactttaacattttaaacagggg
cactgttttcataatgttcatggtggtttacatctataaagccagtcttt
aggaagctgaaacaggagtcccatgcatgtcactctgccctggactatat
agggagtttgaagccagcctggatgacagaggcagaccttgtctcaaaaa
tcctaattaattaatgcctttgaatagaggagggctatggacatcttcct
ggttagacaaggataagtagacatgatcctcacatgggatgtacataccc
tctcacacaggatgtatgtacccctagagtctgtcctgaactgggagagg
cagtgcttcacactctgttggcagcactgacacggcttcttacacttgtg
ttgactgaactgtcaaatcgttgctgtgatctatagggatctgttgggtc
tttgcttcttcttagaaaaataaagatattaagcttacttcttaacgtgg
taattcccagtccagtcctgagtcgaggtgaaccctcagttacgtgcctt
gctctaataagaagag

gaattcctgggctcaagtgatcctccgacctcagccttctaaagagacag
ggactacagtctccccagtgctgcagccagcgaggggctgggccagctct
cctgctgtcatatgctcagggctggttcacctatggttttgccattaggt
ctagctctactgtgctgcccaagcaagatatagggcccattctcaaaagt
gctgcaaccagtgagaggtagggccagctctgcacagcccttggacatct
atgtggtcctgagtggcagcccagaccaaggatgtatacatggtctttag
tggtaatatgagctacaaacgttgaaacctctgtgcttgcatggtcaaag
acccagacatggccctcaatcacagcacaggctgggacttcaccatggct
tcaggtggtggggcaggctactcacagcaagctattcctctccatcctca
tgtctccagttccacctttcttcataatgttgcaactgatcggcttcccc
ttctcacccatctgcctgccacatacttgcacattgtattggttcccact
gcaggtggaccactaggctggagggcctctgggtgacctcctctgcctgc
tctgtgagacgtgacaacaggaagactcctgggtgccctctgcccacaca
gtgtggcatggctgcagggcagcctctgtgtgtctatatagcctcctgtg
cagtgtggctgcagactgacctctggttgtcttcctcttctgtgccatgt
tgtgtgatgacaggcaggccactgtgttccccatctgcctacacctattg
gcatggctgactccatttttttttaaatattttttttatacagacaagtt
tgtcaatagaatcaaattgaagacccagacataaatccacataggaagat
gtaagatgttctgatagagacaaagaatatgaaagtttattagcagtgtt
taaaatcatcagttacagtagataattgatgatacctgttttgtttgttt
ttagtaaagaaacagaaatgcatactggaaaaagaccgccatctcataat
gtcctgtcaaacttgcttgccacatgtgaaatgtagagaaccatacctta
tgcgttacaaatctcatcctgattgactaagacctctatttaacctaagt
taca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_63991411_63992465
seq2: B6Ng01-176O13.b_173_1210

seq1  TTTCCCAATCTGTTGGTGGTCTTTTTGTCTTATTGACGGTGTCTTTTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCAATCTGTTGGTGGTCTTTTTGTCTTATTGACGGTGTCTTTTGCC  50

seq1  TTGCAGAAACTTTGGAGTTTCATTAGGTCCCATTTGTCGATTCTCGATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGAAACTTTGGAGTTTCATTAGGTCCCATTTGTCGATTCTCGATCT  100

seq1  TACAGCACAAGCCATTGCTGTTCTGTTCAGGAATTTTTCCCCTGTGCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCACAAGCCATTGCTGTTCTGTTCAGGAATTTTTCCCCTGTGCCCA  150

seq1  TATCTTCAAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTCAAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCT  200

seq1  GGTTTTATGTGAAGTTCCTTGATCCACTTAGATTTGACCTTAGTACAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTATGTGAAGTTCCTTGATCCACTTAGATTTGACCTTAGTACAAGG  250

seq1  AGATAAGTATGGATCGATTCGCATTCTTCTACACGATAACAACCAGTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAGTATGGATCGATTCGCATTCTTCTACACGATAACAACCAGTTGT  300

seq1  GCCAGCACCAATTGTTGAAAATGCTGTCTTTCTTCCACTGGATGGTTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCACCAATTGTTGAAAATGCTGTCTTTCTTCCACTGGATGGTTTTA  350

seq1  GCTCCCTTGTCGAAGATCAAGTGACCATAGGTGTGTGGGTTCATTTCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCTTGTCGAAGATCAAGTGACCATAGGTGTGTGGGTTCATTTCTGG  400

seq1  ATCTTCAATTCTATTCCATTGGTCTACTTGTCTGTCTCTATACCAGTACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCAATTCTATTCCATTGGTCTACTTGTCTGTCTCTATACCAGTACC  450

seq1  ATGCAGTTTTTATCACAATTGCTCTGTAGTAAAGCTTTAGGTCTGGCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTTTTTATCACAATTGCTCTGTAGTAAAGCTTTAGGTCTGGCATC  500

seq1  ACTTTAACATTTTAAACAGGGGCACTGTTTTCATAATGTTCATGGTGGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAACATTTTAAACAGGGGCACTGTTTTCATAATGTTCATGGTGGTT  550

seq1  TACATCTATAAAGCCAGTCTTTAGGAAGCTGAAACAGGAGTCCCATGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCTATAAAGCCAGTCTTTAGGAAGCTGAAACAGGAGTCCCATGCAT  600

seq1  GTCACTCTGCCCTGGACTATATAGGGAGTTTGAAGCCAGCCTGGATGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTCTGCCCTGGACTATATAGGGAGTTTGAAGCCAGCCTGGATGACA  650

seq1  GAGGCAGACCTTGTCTCAAAAATCCTAATTAATTAATGCCTTTGAATAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGACCTTGTCTCAAAAATCCTAATTAATTAATGCCTTTGAATAGA  700

seq1  GGAGGGCTATGGACATCTTCCTGGTTAGACAAGGATAAGTAGACATGATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGCTATGGACATCTTCCTGGTTAGACAAGGATAAGTAGACATGATC  750

seq1  CTCACATGGGATGTACATACCCTCTCACACAGGATGTATGTACCCCTAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATGGGATGTACATACCCTCTCACACAGGATGTATGTACCCCTAGA  800

seq1  GTCTGTCCTGAACTGGGAGAAGGCAGTGCTTCACACTCTGTTGGCAGCAC  850
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GTCTGTCCTGAACTGGGAG-AGGCAGTGCTTCACACTCTGTTGGCAGCAC  849

seq1  TGAACACGGGCTTCTTACACTTGTGTTGACTTGAAACTGTTCAAATCGTT  900
      || |||| |||||||||||||||||||||||   ||||| ||||||||||
seq2  TG-ACAC-GGCTTCTTACACTTGTGTTGACT--GAACTG-TCAAATCGTT  894

seq1  GCTGTGAATCTATAGGATTCTGTTTGGGTCTTTGCTTCTTCTTTAGAAAA  950
      |||||| |||||||||  |||| ||||||||||||||||||||   ||||
seq2  GCTGTG-ATCTATAGGGATCTG-TTGGGTCTTTGCTTCTTCTTAGAAAAA  942

seq1  TAAAGATAATTAAGCTAAC-TCTTAACAGTGGTAAAATTCACAGTCAAAG  999
      ||||||| |||||||| || ||||||| |||||  ||||| ||||| |  
seq2  TAAAGAT-ATTAAGCTTACTTCTTAAC-GTGGT--AATTCCCAGTCCA--  986

seq1  TTCCTGATGCAGTGTGAACCCTCAGTTACGTGCCTTGTCCTCCATAATAA  1049
       ||||||  |   ||||||||||||||||||||||||  |||  ||||||
seq2  GTCCTGAGTCGAGGTGAACCCTCAGTTACGTGCCTTG--CTC--TAATAA  1032

seq1  GAAGAG  1055
      ||||||
seq2  GAAGAG  1038


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