BAC Information

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BAC

Clone NameB6Ng01-177I10
Chromosome17 (Build37)
Map Location 91,067,717 - 91,198,489
singlet/doubletdoublet
Overlap geneNrxn1
Upstream geneLOC100043906
Downstream geneEG668871, LOC668872, LOC627235, LOC100043741, LOC100043742
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-177I10.bB6Ng01-177I10.g
ACCGA004771GA004772
length1,1041,046
definitionB6Ng01-177I10.b B6Ng01-177I10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,067,717 - 91,068,823)(91,197,423 - 91,198,489)
sequence
gaattccaacagaagtctgagaatatggccaaataactgactaaattata
ctaattgatggttacataacttgaaaatagagcagtcccttaatttaaaa
atagtgcagaggaaaaatctgtggcatattaaatgaatagattcatggat
tttatgtattaggtttttcgactttctttgtgtatatctgaaacctatga
agtagaaatacataaaattatggtactaccttgggtctcaacaggagcag
gttggtccattttgtgagtatctgtgagtgcccgtgtattgcattattga
ggaggggttttctgagaatttcttttcttaacttgaaagaagaacttcag
atagcttgattgctaatgtgttccttattaaagacactgtttcatataac
ctaggctggctaccaactcactacttaggctaggatgaccttgaacttcg
gattttttttttaactccaccttaaggtactcaaattacaggtgcgcacg
caccaccagttcatgagaatttgatggtcttacttgatacctaagcaatc
tgtcaactgactgacatctttatgccaagggaaataatttgaaattgctc
tttattatccatacatattcaaaaggaaaatgtcatgatttttagaaaac
aaaacaaacaaaacaaaatgatcagcatgaatctggaggttgctgaatat
cacagacagatgggtagttgtgaataagtcaggatgttacagctaagctg
acttatatttactaacttggttatagtaactgaattatccaacaacatta
gttttttagaagctgtacactaaggacatgctgtcttaagaaaaagagtg
aaattcactctagtatatgtgttagagaagttaacaactttttctaatga
aaaaataacagcaaaattatgacctttttttttatcccaccacaaaccaa
ttagaagaacttttttttttatgtcttggaaaactttgtttgaagcatat
atatctttgttgttggttcagcttaaagatttcacccaggtaagtagaaa
ggtggtttaaatatgctttctacatgctaataaattatgaacctaaagta
gttt

gaattcttcatgcacaaaaataaatgctctctggtcagcaactctcattt
tatatttctcaagagcacagcctttattagttggttgtctataaaattga
tagcagagaaaaaacataactaataaaatactgagtcatctggggaattt
ctttgaaatggggctcttggatttcactctgagagacacacaggggataa
cagctgagcactgggaactacaccattgttggtggccttcattcccaggc
tatgcctcaaggtccagcagccacgcctctggacctttggtactatctgt
tcccttcttatctctgattgactttcataatgtaaaacaagagcagaact
atctccctgaacattgtggtttatataagatcacgtcaaagtccaagcag
caatctaagaatgaataatcagaatacctttattttaagcttcctgtttg
gtgcttgtaataaacttatcaattctatgttaaaaactcataccagatag
tgaatcatccttaggtttcatttcaatttcttgtttttacttcagttgct
atagattggttttatatggtaagaaatatgtgtcaaaggttaatttcatg
acacatttaatttttactgtttttttcctcttactaaaaatggatttttc
atgctcactcaatatatcttgattaaagttccctttccctctactccccc
tgttcctccagattcactcccttcctctctctcattagaaaacaatacgg
gatagaaatacaataaaataaggcaaaacgaaaactaatacatctgaatt
gggcaaagcaaacagaagaaaagagtccaagaaaatgcacaagaaaacag
aattccacttgtttgcacactcagaatcccatttaaaacattagctggaa
gctacaatatatgccgcctcttggagtttgtttctgtgcttgtctagggc
aaacttaaggactgttgttctcttggaatacattaaagttttttctttat
ttttttaccagtggatgtgaagatagaatggagccaatttatattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_91067717_91068823
seq2: B6Ng01-177I10.b_46_1149

seq1  GAATTCCAACAGAAGTCTGAGAATATGGCCAAATAACTGACTAAATTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACAGAAGTCTGAGAATATGGCCAAATAACTGACTAAATTATA  50

seq1  CTAATTGATGGTTACATAACTTGAAAATAGAGCAGTCCCTTAATTTAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTGATGGTTACATAACTTGAAAATAGAGCAGTCCCTTAATTTAAAA  100

seq1  ATAGTGCAGAGGAAAAATCTGTGGCATATTAAATGAATAGATTCATGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGCAGAGGAAAAATCTGTGGCATATTAAATGAATAGATTCATGGAT  150

seq1  TTTATGTATTAGGTTTTTCGACTTTCTTTGTGTATATCTGAAACCTATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTATTAGGTTTTTCGACTTTCTTTGTGTATATCTGAAACCTATGA  200

seq1  AGTAGAAATACATAAAATTATGGTACTACCTTGGGTCTCAACAGGAGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAAATACATAAAATTATGGTACTACCTTGGGTCTCAACAGGAGCAG  250

seq1  GTTGGTCCATTTTGTGAGTATCTGTGAGTGCCCGTGTATTGCATTATTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTCCATTTTGTGAGTATCTGTGAGTGCCCGTGTATTGCATTATTGA  300

seq1  GGAGGGGTTTTCTGAGAATTTCTTTTCTTAACTTGAAAGAAGAACTTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGTTTTCTGAGAATTTCTTTTCTTAACTTGAAAGAAGAACTTCAG  350

seq1  ATAGCTTGATTGCTAATGTGTTCCTTATTAAAGACACTGTTTCATATAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTTGATTGCTAATGTGTTCCTTATTAAAGACACTGTTTCATATAAC  400

seq1  CTAGGCTGGCTACCAACTCACTACTTAGGCTAGGATGACCTTGAACTTCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCTGGCTACCAACTCACTACTTAGGCTAGGATGACCTTGAACTTCG  450

seq1  GATTTTTTTTTTAACTCCACCTTAAGGTACTCAAATTACAGGTGCGCACG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTTTTTTAACTCCACCTTAAGGTACTCAAATTACAGGTGCGCACG  500

seq1  CACCACCAGTTCATGAGAATTTGATGGTCTTACTTGATACCTAAGCAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACCAGTTCATGAGAATTTGATGGTCTTACTTGATACCTAAGCAATC  550

seq1  TGTCAACTGACTGACATCTTTATGCCAAGGGAAATAATTTGAAATTGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAACTGACTGACATCTTTATGCCAAGGGAAATAATTTGAAATTGCTC  600

seq1  TTTATTATCCATACATATTCAAAAGGAAAATGTCATGATTTTTAGAAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTATCCATACATATTCAAAAGGAAAATGTCATGATTTTTAGAAAAC  650

seq1  AAAACAAACAAAACAAAATGATCAGCATGAATCTGGAGGTTGCTGAATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAACAAAACAAAATGATCAGCATGAATCTGGAGGTTGCTGAATAT  700

seq1  CACAGACAGATGGGTAGTTGTGAATAAGTCAGGATGTTACAGCTAAGCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACAGATGGGTAGTTGTGAATAAGTCAGGATGTTACAGCTAAGCTG  750

seq1  ACTTATATTTACTAACTTGGTTATAGTAACTGAATTATCCAACAACATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATATTTACTAACTTGGTTATAGTAACTGAATTATCCAACAACATTA  800

seq1  GTTTTTTAGAAGCTGTACACT-AGGACATGCTGTCTTAAGAAAAAGAGTG  849
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GTTTTTTAGAAGCTGTACACTAAGGACATGCTGTCTTAAGAAAAAGAGTG  850

seq1  AAATTCACTCTAGTATATTGTGTTAGAGAAGTT-ACAAC-TTTTCTAATG  897
      ||||||||||||||||| ||||||||||||||| ||||| ||||||||||
seq2  AAATTCACTCTAGTATA-TGTGTTAGAGAAGTTAACAACTTTTTCTAATG  899

seq1  AAAAAATAACAGCAAAATTTATGAACTTTTTTTTATTCCCA-CACAAACC  946
      ||||||||||||||||| |||||| |||||||||  ||||| ||||||||
seq2  AAAAAATAACAGCAAAA-TTATGACCTTTTTTTTTATCCCACCACAAACC  948

seq1  AATAAG-AGAAC-TTTTTTTTTATGTCTTGG-AAACTTTGTTTG-AGCAT  992
      ||| || ||||| |||||||||||||||||| |||||||||||| |||| 
seq2  AATTAGAAGAACTTTTTTTTTTATGTCTTGGAAAACTTTGTTTGAAGCA-  997

seq1  TATATATTCTTTTGTTGTT-GTTCAGGCTAAAGATTTCACCCAGGTAAAG  1041
      |||||||   ||||||||| ||||||  |||||||||||||||||| |||
seq2  TATATAT--CTTTGTTGTTGGTTCAGCTTAAAGATTTCACCCAGGT-AAG  1044

seq1  TAGATAGTTGGTTTTAAATATGGCTTTTCTACATGCCTAATAAAATTATG  1091
      |||| || ||| ||||||||||   |||||||||| ||||| ||||||||
seq2  TAGAAAGGTGG-TTTAAATATG--CTTTCTACATG-CTAAT-AAATTATG  1089

seq1  ACCCTAAAAGTAGTTT  1107
      | ||| ||||||||||
seq2  AACCT-AAAGTAGTTT  1104


seq1: chr17_91197423_91198489
seq2: B6Ng01-177I10.g_68_1113 (reverse)

seq1  AAATATAAATATGCCTCCATCCCTATCTCCACATCCACTTGTTAAAAAAA  50
      |||||||||| || ||||||  |||||| |||||||||| ||        
seq2  AAATATAAAT-TGGCTCCAT-TCTATCTTCACATCCACTGGT--------  40

seq1  AAAAAAAAAAAAAAAAAAAAAAAACTTTAATGTAATCCAAGAGGAAACAA  100
            ||||||| ||| |||||||||||||||| ||||||||  ||| |
seq2  ------AAAAAAATAAAGAAAAAACTTTAATGTATTCCAAGAG--AAC-A  81

seq1  ACAGTTCCTAATGTCTGCCCTAGACAGCCAACAGAAAACAAACT-CAAGA  149
      |||| |||| | || |||||||||||  | |||| ||||||||| |||||
seq2  ACAG-TCCTTAAGTTTGCCCTAGACAAGC-ACAG-AAACAAACTCCAAGA  128

seq1  G--CGCATATATTGTAGCTTCCAGCTTAATGTTTT-AATGGGATTCCTGA  196
      |   ||||||||||||||||||||| ||||||||| ||||||||| ||||
seq2  GGCGGCATATATTGTAGCTTCCAGC-TAATGTTTTAAATGGGATT-CTGA  176

seq1  GTGTGCAAACAAGTGGAATTCTG-TTTCTTGTGCATTTTCTTGGACTCTT  245
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GTGTGCAAACAAGTGGAATTCTGTTTTCTTGTGCATTTTCTTGGACTCTT  226

seq1  TTCCTTCTGTTTGCTTTGCCCAATTCAGATGTATTAGTTTTCGTTTTGCC  295
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TT-CTTCTGTTTGCTTTGCCCAATTCAGATGTATTAGTTTTCGTTTTGCC  275

seq1  TTATTTTATTGTATTTCTATCCCGTATTTGTTTTCTAATGAGAGAGAGGA  345
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTATTTTATTGTATTTCTATCCCGTA-TTGTTTTCTAATGAGAGAGAGGA  324

seq1  AGGGAGTGAATCTGGAGGAACAGGGGGAGTAGAGGGAAAGGGAACTTTAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGTGAATCTGGAGGAACAGGGGGAGTAGAGGGAAAGGGAACTTTAA  374

seq1  TCAAGATATATTGAGTGAGCATGAAAAATCCATTTTTAGTAAGAGGAAAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGATATATTGAGTGAGCATGAAAAATCCATTTTTAGTAAGAGGAAAA  424

seq1  AAACAGTAAAAATTAAATGTGTCATGAAATTAACCTTTGACACATATTTC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTAAAAATTAAATGTGTCATGAAATTAACCTTTGACACATATTTC  474

seq1  TTACCATATAAAACCAATCTATAGCAACTGAAGTAAAAACAAGAAATTGA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCATATAAAACCAATCTATAGCAACTGAAGTAAAAACAAGAAATTGA  524

seq1  AATGAAACCTAAGGATGATTCACTATCTGGTATGAGTTTTTAACATAGAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAACCTAAGGATGATTCACTATCTGGTATGAGTTTTTAACATAGAA  574

seq1  TTGATAAGTTTATTACAAGCACCAAACAGGAAGCTTAAAATAAAGGTATT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAAGTTTATTACAAGCACCAAACAGGAAGCTTAAAATAAAGGTATT  624

seq1  CTGATTATTCATTCTTAGATTGCTGCTTGGACTTTGACGTGATCTTATAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTATTCATTCTTAGATTGCTGCTTGGACTTTGACGTGATCTTATAT  674

seq1  AAACCACAATGTTCAGGGAGATAGTTCTGCTCTTGTTTTACATTATGAAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCACAATGTTCAGGGAGATAGTTCTGCTCTTGTTTTACATTATGAAA  724

seq1  GTCAATCAGAGATAAGAAGGGAACAGATAGTACCAAAGGTCCAGAGGCGT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATCAGAGATAAGAAGGGAACAGATAGTACCAAAGGTCCAGAGGCGT  774

seq1  GGCTGCTGGACCTTGAGGCATAGCCTGGGAATGAAGGCCACCAACAATGG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCTGGACCTTGAGGCATAGCCTGGGAATGAAGGCCACCAACAATGG  824

seq1  TGTAGTTCCCAGTGCTCAGCTGTTATCCCCTGTGTGTCTCTCAGAGTGAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTTCCCAGTGCTCAGCTGTTATCCCCTGTGTGTCTCTCAGAGTGAA  874

seq1  ATCCAAGAGCCCCATTTCAAAGAAATTCCCCAGATGACTCAGTATTTTAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAGAGCCCCATTTCAAAGAAATTCCCCAGATGACTCAGTATTTTAT  924

seq1  TAGTTATGTTTTTTCTCTGCTATCAATTTTATAGACAACCAACTAATAAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTATGTTTTTTCTCTGCTATCAATTTTATAGACAACCAACTAATAAA  974

seq1  GGCTGTGCTCTTGAGAAATATAAAATGAGAGTTGCTGACCAGAGAGCATT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTGCTCTTGAGAAATATAAAATGAGAGTTGCTGACCAGAGAGCATT  1024

seq1  TATTTTTGTGCATGAAGAATTC  1067
      ||||||||||||||||||||||
seq2  TATTTTTGTGCATGAAGAATTC  1046


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