BAC Information

Click to search

BAC

Clone NameB6Ng01-177K02
Chromosome17 (Build37)
Map Location 16,109,650 - 16,110,461
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041586, LOC100041574, LOC100041289, LOC100041639, LOC100041621, LOC100041301, 9030025P20Rik, Tcte3, C330048F19, LOC664953, Dll1, LOC100041314, 4932442K08Rik, Psmb1, Tbp, Pdcd2, LOC636398, Prdm9, EG626573, LOC665017, LOC100041775, 5830433I10Rik, Chd1, Rgmb, LOC100041365, Eif3s6-ps3
Downstream geneLOC100041383, LOC100041394, LOC213781, LOC100041407, LOC665072, EG383211, LOC626785, LOC665085, BC002059
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-177K02.bB6Ng01-177K02.g
ACCGA004846GA004847
length1,092804
definitionB6Ng01-177K02.b B6Ng01-177K02.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttttgatcacatgggttgattttatttgtacattacattaaaca
tttcacatgtgtgttccaacaagtccttcagtattaggaagcaaggagta
gtggctgacatctgaaagactgagtaccacagtaaccacatcatcatctt
tataaacaacctctttattgttctgcctccatatcactcagaatctctgg
agtccctcaaaatcccccacagttttatctagcatcacatggatttaagc
atggagttctcttatttgatttttaagattacaatataatcacatcattt
ctcccttccctttttcccttcaaaccatcccatattccaatccttgcttt
atttcaaattatttgccttctttttcattaattattaccacatgaatata
tattgttgttatgtgcataaatatacatacatacatacatacatacatac
atatacacatacatcttgctcagtctgtatactgatattgatattttttc
agccctaactatttagtattgggtaatcagttggtgtgtccttccttacc
tggcaaagactatctccctcccactctcagccttctcgagttgcctgtac
ctttttgtgcagagttaagcctcatgggctttttccggtccactttggca
tgtctattgattctgtcctcattcggctcctgtttaagcaattatgttag
taaggtttggtggatgtagcttctgacattacttaggagacacagcctcc
cagaaaatttactgatcctctggttccacaatgttccctgagccataggt
atggaagtattttgtagctatatccattgggactaggttctataactcta
aattttgactgggtgtgcttttctgtaatgatttccatctgttgcaagaa
gatgttttctagatgaagggtaaaggctaccactttatcctgtgggttgt
aaagacaaattgtttattattgctgttagataccatgctgcttggtgagt
ggatgttgtaggttcctccctctgagatcatggccttactaggcttgaga
agtggctaagtctctagaacaggtattatgactgattatgca
gaattcattgtatctcacagccaataaaatcttcctcctgaggttttgat
gtatgagctgctttaacttcaaaaggaaacgtctgtggcatttaacttct
gtctctgatcagcattagaagacaattgcacttaatatcttctgcatcgt
gaagccttcagaattagagaagccatgagtatgaagaataagaaccttta
ggagacgaaactatgtagggtttcttgagtaaaggttgcaataactaaat
tcttattccttcatggaaaaaaatttaaaaagattacatgtttactaaat
cttgagtataaaatagtatgattgatgttgtataaatgtatataaaattt
aatgtcaataaactagctgtaggggagaattatcaattataaaaccttcc
agaaacttctagagaccacttatttcctagacatatattctggtgatgca
gaaaaatacagacatggtttgacagaaaaaggaacctcagcattgaggtt
ttgttttttactgtctattgtgatgttaagtgcaaggccccaagacctgg
agtctgcatgcagcccttgtgaccttctccccatgttaatcctgattgat
gaataaacatgccaagagccaatatctgggcagaagagacataggtgggg
ttgaagtttcatgggcttgggtcagagagagggccacaaagaggaggagg
aaaaggaggaagaggaaaagaggagagaaagagggaggagagaaaagccc
catagagtagaagaatgtgcatgaaaggagaaaggaaaagtggcatagga
taaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_16109650_16110461
seq2: B6Ng01-177K02.g_62_865

seq1  GAATTCATTGTATCTCACAGCCAATAAAATCTTCCTCCTGAGGTTTTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTATCTCACAGCCAATAAAATCTTCCTCCTGAGGTTTTGAT  50

seq1  GTATGAGCTGCTTTAACTTCAAAAGGAAACGTCTGTGGCATTTAACTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAGCTGCTTTAACTTCAAAAGGAAACGTCTGTGGCATTTAACTTCT  100

seq1  GTCTCTGATCAGCATTAGAAGACAATTGCACTTAATATCTTCTGCATCGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGATCAGCATTAGAAGACAATTGCACTTAATATCTTCTGCATCGT  150

seq1  GAAGCCTTCAGAATTAGAGAAGCCATGAGTATGAAGAATAAGAACCTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCTTCAGAATTAGAGAAGCCATGAGTATGAAGAATAAGAACCTTTA  200

seq1  GGAGACGAAACTATGTAGGGTTTCTTGAGTAAAGGTTGCAATAACTAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACGAAACTATGTAGGGTTTCTTGAGTAAAGGTTGCAATAACTAAAT  250

seq1  TCTTATTCCTTCATGGAAAAAAATTTAAAAAGATTACATGTTTACTAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTCCTTCATGGAAAAAAATTTAAAAAGATTACATGTTTACTAAAT  300

seq1  CTTGAGTATAAAATAGTATGATTGATGTTGTATAAATGTATATAAAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGTATAAAATAGTATGATTGATGTTGTATAAATGTATATAAAATTT  350

seq1  AATGTCAATAAACTAGCTGTAGGGGAGAATTATCAATTATAAAACCTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCAATAAACTAGCTGTAGGGGAGAATTATCAATTATAAAACCTTCC  400

seq1  AGAAACTTCTAGAGACCACTTATTTCCTAGACATATATTCTGGTGATGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTTCTAGAGACCACTTATTTCCTAGACATATATTCTGGTGATGCA  450

seq1  GAAAAATACAGACATGGTTTGACAGAAAAAGGAACCTCAGCATTGAGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATACAGACATGGTTTGACAGAAAAAGGAACCTCAGCATTGAGGTT  500

seq1  TTGTTTTTTACTGTCTATTGTGATGTTAAGTGCAAGGCCCCAAGACCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTTACTGTCTATTGTGATGTTAAGTGCAAGGCCCCAAGACCTGG  550

seq1  AGTCTGCATGCAGCCCTTGTGACCTTCTCCCCATGTTAATCCTGATTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGCATGCAGCCCTTGTGACCTTCTCCCCATGTTAATCCTGATTGAT  600

seq1  GAATAAACATGCCAAGAGCCAATATCTGGGCAGAAGAGACATAGGTGGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAACATGCCAAGAGCCAATATCTGGGCAGAAGAGACATAGGTGGGG  650

seq1  TTGAAGTTTCATGGGCTTGGGTCAGAGAGAGGGCCACAAAGAGGAGGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGTTTCATGGGCTTGGGTCAGAGAGAGGGCCACAAAGAGGAGGAGG  700

seq1  AAAAGGAGGAAGAGGAAAAGGAGGAAGAGGAAAAGGAGGGGAGGAGAGAA  750
      ||||||||||||||||||| |||||    || || || ||||||||||||
seq2  AAAAGGAGGAAGAGGAAAA-GAGGA----GAGAAAGA-GGGAGGAGAGAA  744

seq1  AAGCCACCATAGAGTAGAAGAATGTGCAGGAAAGGAGAAAGGAGAAGTGG  800
      ||||| |||||||||||||||||||||| |||||||||||||| ||||||
seq2  AAGCC-CCATAGAGTAGAAGAATGTGCATGAAAGGAGAAAGGAAAAGTGG  793

seq1  CCATAGGATAAA  812
       |||||||||||
seq2  -CATAGGATAAA  804