BAC Information

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BAC

Clone NameB6Ng01-177P20
Chromosome17 (Build37)
Map Location 26,951,966 - 27,106,445
singlet/doubletdoublet
Overlap geneNkx2-5, Kifc1, Phf1, Cuta, Syngap1
Upstream geneFbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1, Pdia2, Arhgdig, Rgs11, Itfg3, LOC100042643, Luc7l, EG383229, EG240055, C230078M08Rik, Dusp1, EG666668, Ergic1, Atp6v0e, A930001N09Rik, Bnip1
Downstream geneZbtb9, Bak1, Ggnbp1, Itpr3, 2900010M23Rik, Ihpk3, Lemd2, LOC100042713, ENSMUSG00000073430, Grm4, LOC677010, Hmga1, AI413582, Nudt3, Rps10, Pacsin1, Spdef, LOC100042744, D17Wsu92e, EG666682, Snrpc, F830021D11Rik, Taf11, Anks1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-177P20.bB6Ng01-177P20.g
ACCGA005106GA005107
length1,073598
definitionB6Ng01-177P20.b B6Ng01-177P20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,105,375 - 27,106,445)(26,951,966 - 26,952,563)
sequence
gaattcccagactggctgtcccttcctcccaaccctccatccttcttctg
ccttggttcccctccccaggtttccagcttgagtagcagaccctagaggc
cactcttgggcctattttcagaagcttctatggctcttttacccacttca
tggctcctcctctcaacgcagccttctgtgtctgtgctggaagagggggc
cgtgtggccccacaatgttggacacgtacttggcctttaaaatccaactt
aaaatgaattctattaggtttaagtagcagctgggctgcagtgagatcaa
agcctacaaatagtttggaacaaataaccaaattactgtctaagctacaa
gacatttaggtagggcagcatgtagttatatctgaccctatctccaaagg
acacacaaaaaaaatgcagcctcccgagatcagcttcccccacctccgta
tcagaatcaaagactcacctgttgttacaaggccaccccaaatataacct
tagacaagctaccctctgggctcagggtatgtcccaggcagtcagtcgtg
gaagaccctgagcacacacagcaggagagcagggaaggaaccccagatcg
tctccactctgcatgtctgctcataacgacacatgggcatgccccctacg
ccctcatgaacccaaatttagaaactggataaattagggtaccattattc
attttacaaaagaattcactgcaggagtcctctttaaatggtgaggctcc
ttggtgtctctcagcatttatttacagatcactgacaactgtgacagagg
ccgggcaggcagagagtaaaattacactgtggagccactgcccaccacag
atcctttcccacagaaacgtgcctcgggacagggtggacccgacagcttc
cctattcactggcttttaagtaaggatatgtgtcctgaaagcttcctggg
cggcagtgggaaagaatgattgcaatactatatgtcatctggcctctgca
gagaggctatttatcatgctgttccatgtgtcctgccatgtactaaatct
ggcgaactgaccccgtgaatact
gaattcactatgtagaccaggttggcctcaaattcacagagatcagcctg
cttctgcctcttgagttatgaaactagaggcatgtgctacccgcaggatt
cttacacagcatcaggttcaggacctgccagctgatggcaaagccactga
ttgccagcagactatggatctcttttggaagtgctcctcctgcaccttgc
cttcagcttccccaagaaatcgggttcccatttgtcacaccaagggttct
tgctctagccatggttagcctgggcctcctgcaccaggacttcctcactg
gatgacattcctgaagccccagacaatggagtttcaggtaacaaggaatt
agatcatgtcatagaaaggatggagctggagatgaccatggaaacagcct
atgagggctaaacagctcttatgggccgcctggaattcaagagtgggact
attttgtagccgatggaggtagacagagcacaaggatgagcgtccttaca
gtgcatcctgaggcaccaatgggaaaactatttgcttcattcccaaaatg
ttaggtagcactgagtccaggaggagcagggtgtgggggggtgagagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_27105375_27106445
seq2: B6Ng01-177P20.b_45_1116 (reverse)

seq1  GTATTCAGGGGCTCAG-TCGCCAGATTTAGTACCAGGCAGGGACACCAGG  49
      ||||||| ||| |||| ||||||||||||||||  |||| ||||||  ||
seq2  GTATTCACGGGGTCAGTTCGCCAGATTTAGTACATGGCA-GGACACATGG  49

seq1  AACAGCATGTTAAATAGCCTCTTCTGGCAGAGCCCAAGTTGCTGTTGGTA  99
      ||||||||| ||||||||||| ||| |||||| |||  |  |   | |||
seq2  AACAGCATGATAAATAGCCTC-TCT-GCAGAGGCCAGATGACATATAGTA  97

seq1  ATGCCACTCA-TCTCTCCCACTGCCGCCCAGGAGCCTTTCAGGACACATA  148
       || || ||| ||| ||||||||||||||||||  |||||||||||||||
seq2  TTG-CAATCATTCTTTCCCACTGCCGCCCAGGAAGCTTTCAGGACACATA  146

seq1  TCC-TACCTAAAAGCCAGTGAATAGGG-AGCTGTCGGGTCCA-CCTGTCC  195
      ||| ||| ||||||||||||||||||| |||||||||||||| |||||||
seq2  TCCTTACTTAAAAGCCAGTGAATAGGGAAGCTGTCGGGTCCACCCTGTCC  196

seq1  CGAGGCACGTTTCTGTGGG-AAGGATCTGTGGTGGGCAGTGGCTCCACAG  244
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CGAGGCACGTTTCTGTGGGAAAGGATCTGTGGTGGGCAGTGGCTCCACAG  246

seq1  TGTAATTTTTACTCTCTGCCTGCCCGGCCTCTGTCACAGTTGTCAGTGAT  294
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAA-TTTTACTCTCTGCCTGCCCGGCCTCTGTCACAGTTGTCAGTGAT  295

seq1  CTGTAAATAAATGCTGAGAGACACCAAGGAGCCTCACCATTTAAAGAGGA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAATAAATGCTGAGAGACACCAAGGAGCCTCACCATTTAAAGAGGA  345

seq1  CTCCTGCAGTGAATTCTTTTGTAAAATGAATAATGGTACCCTAATTTATC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCAGTGAATTCTTTTGTAAAATGAATAATGGTACCCTAATTTATC  395

seq1  CAGTTTCTAAATTTGGGTTCATGAGGGCGTAGGGGGCATGCCCATGTGTC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCTAAATTTGGGTTCATGAGGGCGTAGGGGGCATGCCCATGTGTC  445

seq1  GTTATGAGCAGACATGCAGAGTGGAGACGATCTGGGGTTCCTTCCCTGCT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGAGCAGACATGCAGAGTGGAGACGATCTGGGGTTCCTTCCCTGCT  495

seq1  CTCCTGCTGTGTGTGCTCAGGGTCTTCCACGACTGACTGCCTGGGACATA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCTGTGTGTGCTCAGGGTCTTCCACGACTGACTGCCTGGGACATA  545

seq1  CCCTGAGCCCAGAGGGTAGCTTGTCTAAGGTTATATTTGGGGTGGCCTTG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAGCCCAGAGGGTAGCTTGTCTAAGGTTATATTTGGGGTGGCCTTG  595

seq1  TAACAACAGGTGAGTCTTTGATTCTGATACGGAGGTGGGGGAAGCTGATC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAACAGGTGAGTCTTTGATTCTGATACGGAGGTGGGGGAAGCTGATC  645

seq1  TCGGGAGGCTGCATTTTTTTTGTGTGTCCTTTGGAGATAGGGTCAGATAT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGAGGCTGCATTTTTTTTGTGTGTCCTTTGGAGATAGGGTCAGATAT  695

seq1  AACTACATGCTGCCCTACCTAAATGTCTTGTAGCTTAGACAGTAATTTGG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACATGCTGCCCTACCTAAATGTCTTGTAGCTTAGACAGTAATTTGG  745

seq1  TTATTTGTTCCAAACTATTTGTAGGCTTTGATCTCACTGCAGCCCAGCTG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGTTCCAAACTATTTGTAGGCTTTGATCTCACTGCAGCCCAGCTG  795

seq1  CTACTTAAACCTAATAGAATTCATTTTAAGTTGGATTTTAAAGGCCAAGT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTAAACCTAATAGAATTCATTTTAAGTTGGATTTTAAAGGCCAAGT  845

seq1  ACGTGTCCAACATTGTGGGGCCACACGGCCCCCTCTTCCAGCACAGACAC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGTCCAACATTGTGGGGCCACACGGCCCCCTCTTCCAGCACAGACAC  895

seq1  AGAAGGCTGCGTTGAGAGGAGGAGCCATGAAGTGGGTAAAAGAGCCATAG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCTGCGTTGAGAGGAGGAGCCATGAAGTGGGTAAAAGAGCCATAG  945

seq1  AAGCTTCTGAAAATAGGCCCAAGAGTGGCCTCTAGGGTCTGCTACTCAAG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTCTGAAAATAGGCCCAAGAGTGGCCTCTAGGGTCTGCTACTCAAG  995

seq1  CTGGAAACCTGGGGAGGGGAACCAAGGCAGAAGAAGGATGGAGGGTTGGG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAACCTGGGGAGGGGAACCAAGGCAGAAGAAGGATGGAGGGTTGGG  1045

seq1  AGGAAGGGACAGCCAGTCTGGGAATTC  1071
      |||||||||||||||||||||||||||
seq2  AGGAAGGGACAGCCAGTCTGGGAATTC  1072

seq1: chr17_26951966_26952563
seq2: B6Ng01-177P20.g_66_663

seq1  GAATTCACTATGTAGACCAGGTTGGCCTCAAATTCACAGAGATCAGCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATGTAGACCAGGTTGGCCTCAAATTCACAGAGATCAGCCTG  50

seq1  CTTCTGCCTCTTGAGTTATGAAACTAGAGGCATGTGCTACCCGCAGGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCCTCTTGAGTTATGAAACTAGAGGCATGTGCTACCCGCAGGATT  100

seq1  CTTACACAGCATCAGGTTCAGGACCTGCCAGCTGATGGCAAAGCCACTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACACAGCATCAGGTTCAGGACCTGCCAGCTGATGGCAAAGCCACTGA  150

seq1  TTGCCAGCAGACTATGGATCTCTTTTGGAAGTGCTCCTCCTGCACCTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAGCAGACTATGGATCTCTTTTGGAAGTGCTCCTCCTGCACCTTGC  200

seq1  CTTCAGCTTCCCCAAGAAATCGGGTTCCCATTTGTCACACCAAGGGTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGCTTCCCCAAGAAATCGGGTTCCCATTTGTCACACCAAGGGTTCT  250

seq1  TGCTCTAGCCATGGTTAGCCTGGGCCTCCTGCACCAGGACTTCCTCACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTAGCCATGGTTAGCCTGGGCCTCCTGCACCAGGACTTCCTCACTG  300

seq1  GATGACATTCCTGAAGCCCCAGACAATGGAGTTTCAGGTAACAAGGAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACATTCCTGAAGCCCCAGACAATGGAGTTTCAGGTAACAAGGAATT  350

seq1  AGATCATGTCATAGAAAGGATGGAGCTGGAGATGACCATGGAAACAGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCATGTCATAGAAAGGATGGAGCTGGAGATGACCATGGAAACAGCCT  400

seq1  ATGAGGGCTAAACAGCTCTTATGGGCCGCCTGGAATTCAAGAGTGGGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGGCTAAACAGCTCTTATGGGCCGCCTGGAATTCAAGAGTGGGACT  450

seq1  ATTTTGTAGCCGATGGAGGTAGACAGAGCACAAGGATGAGCGTCCTTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTAGCCGATGGAGGTAGACAGAGCACAAGGATGAGCGTCCTTACA  500

seq1  GTGCATCCTGAGGCACCAATGGGAAAACTATTTGCTTCATTCCCAAAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATCCTGAGGCACCAATGGGAAAACTATTTGCTTCATTCCCAAAATG  550

seq1  TTAGGTAGCACTGAGTCCAGGAGGAGCAGGGTGTGGGGGGGTGAGAGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTAGCACTGAGTCCAGGAGGAGCAGGGTGTGGGGGGGTGAGAGT  598