BAC Information

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BAC

Clone NameB6Ng01-178E23
Chromosome6 (Build37)17 (Build37)
Map Location 119,405,179 - 119,406,31615,925,913 - 15,926,240
singlet/doubletsingletsinglet
Overlap geneWnt5b
Upstream geneZfp248, Zfp9, Ankrd26, Cacna1c, Dcp1b, Cacna2d4, Lrtm2, Adipor2
Downstream geneFbxl14, Erc1, LOC666887, Rad52, Wnk1, EG406236, Ninj2, B4galnt3, Ccdc77, Jarid1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178E23.bB6Ng01-178E23.g
ACCGA005337GA005338
length1,135983
definitionB6Ng01-178E23.b B6Ng01-178E23.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(119,405,179 - 119,406,316)(15,925,913 - 15,926,240)
sequence
gaattccatcctggggcccatgggacgatggaaggagagacccaactcta
tacacacttgtcctctggccacacagcacgcagtggtacattcaattatg
tgtgtacaccgtgcacacacacagatggcagatgtcacatccagcacagc
tccagggactgacataactggagagatgagggaatgaaggaagaaagggt
cctgggacacacagaaaagctggggtcgggtggactggaagccctggtgg
agaagcctcggcacccagaagcttgctgtgtctattatatacagttaaac
agggaggcggatttatagcatgcagtgagcagtctctgtcggggagtagt
tcccagtagtcatgtgaggacacgactacagtgaacattttctgcacaca
ctgccaacattcacacctagaccagaggaaggctttgccatccatccctc
tgatctttgccagtcaagtggggctgaggcattggtccttgacatggcag
tgcctgtgtcgacagcccacatttattcaggatttcactcactcagggct
tcctgtgtttcccacaaacaaatgatgatataataatagtaatagtaata
ataataataataataataaacaaaccaacccacagacaaatgccatacca
ctagcctaagaaagggtgttgtatgcggacaagagcaggtggatgagcag
tgacgtaacctatgcttctagatttgcacacatttatccaagaaatcgtt
ccattctcttgggatgtgtcttcctgttcagacccttggtggagagctct
agagttagttacccaactggcacacagtgtgtctgtatcgcctgttgctg
ggatatctcaactactgagatctcgtgagattctgtagcttccaggattc
acctacgaagccctccaatgagcagcccccaagctcattccttctgtgat
tacgatgagcacatagccacgatcattaggacatggtccctgtgtgaaag
gcctcctcttctccagctggacactggttgagagcgatgaaccttttttc
aggcgagttcaggagagggcaatggttccctgccagttgtaccctgaaag
ggataaaggagaccttgggacttcagtctgctctc
gaattccagcagggcaggaacatgaaggcaggagctggtgtagagggtat
agaggggtgctacttactggcttgctagctgtgacttgctcagcctgctt
tcttttctttctctctctttctttctttctttctttctttctttctttct
ttctttcttattagatattttctttatttacatttcaaatgttatatccc
ctttccttgtttcccctcagaaaaccacctatcccatcccttctcccctt
gctcaccaacccacctactcccacttccttgtcctgacattcccctatac
tggggcatcaagccttcccaggactaagggcctatcctcccattgaggtc
caaccaggctatcctctgctacatatgcagctggagccatggatccctcc
atgtgtactctttagttgatagtttagttcctggaagctctgggggtact
gattggttcatattgttgttcctcctatggggctgcaaacttcttcagct
ctttgggtcctttctctagctcctccattgggatcctatgctcagtccaa
tggctggctgagagcatctacctctgtatttgtcaggcactggcagagcc
tcttaggagacagctatatcaggctcctgtcagcaagcacttgttggcat
ccacaatagtgtctgggtttggtgactatatggtatggatccccaggtgg
ggcagtctctggatggcctttccttcagtctctgctccacactttgtctc
tgtatctcctcccatggggtggctctacctataatgagctaagccctcca
acaagaaccactaattaagaaaatgtattgcaggcttcttacagcctgat
ctaatggagacactttctcaattaaggtccccctctctgatgactccagc
ctgtgtcaagttgacataaaactagccagtatgacacatactggttgcag
tagtgctacagtttgtaagtcttaaaatcttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_119405179_119406316
seq2: B6Ng01-178E23.b_45_1179

seq1  GAATTCCATCCTGGGGCCCATGGGACGATGGAAGGAGAGACCCAACTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCCTGGGGCCCATGGGACGATGGAAGGAGAGACCCAACTCTA  50

seq1  TACACACTTGTCCTCTGGCCACACAGCACGCAGTGGTACATTCAATTATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACTTGTCCTCTGGCCACACAGCACGCAGTGGTACATTCAATTATG  100

seq1  TGTGTACACCGTGCACACACACAGATGGCAGATGTCACATCCAGCACAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTACACCGTGCACACACACAGATGGCAGATGTCACATCCAGCACAGC  150

seq1  TCCAGGGACTGACATAACTGGAGAGATGAGGGAATGAAGGAAGAAAGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGGACTGACATAACTGGAGAGATGAGGGAATGAAGGAAGAAAGGGT  200

seq1  CCTGGGACACACAGAAAAGCTGGGGTCGGGTGGACTGGAAGCCCTGGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGACACACAGAAAAGCTGGGGTCGGGTGGACTGGAAGCCCTGGTGG  250

seq1  AGAAGCCTCGGCACCCAGAAGCTTGCTGTGTCTATTATATACAGTTAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCCTCGGCACCCAGAAGCTTGCTGTGTCTATTATATACAGTTAAAC  300

seq1  AGGGAGGCGGATTTATAGCATGCAGTGAGCAGTCTCTGTCGGGGAGTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGCGGATTTATAGCATGCAGTGAGCAGTCTCTGTCGGGGAGTAGT  350

seq1  TCCCAGTAGTCATGTGAGGACACGACTACAGTGAACATTTTCTGCACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGTAGTCATGTGAGGACACGACTACAGTGAACATTTTCTGCACACA  400

seq1  CTGCCAACATTCACACCTAGACCAGAGGAAGGCTTTGCCATCCATCCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAACATTCACACCTAGACCAGAGGAAGGCTTTGCCATCCATCCCTC  450

seq1  TGATCTTTGCCAGTCAAGTGGGGCTGAGGCATTGGTCCTTGACATGGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTTTGCCAGTCAAGTGGGGCTGAGGCATTGGTCCTTGACATGGCAG  500

seq1  TGCCTGTGTCGACAGCCCACATTTATTCAGGATTTCACTCACTCAGGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTGTCGACAGCCCACATTTATTCAGGATTTCACTCACTCAGGGCT  550

seq1  TCCTGTGTTTCCCACAAACAAATGATGATATAATAATAGTAATAGTAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGTTTCCCACAAACAAATGATGATATAATAATAGTAATAGTAATA  600

seq1  ATAATAATAATAATAATAAACAAACCAACCCACAGACAAATGCCATACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAATAATAATAATAAACAAACCAACCCACAGACAAATGCCATACCA  650

seq1  CTAGCCTAAGAAAGGGTGTTGTATGCGGACAAGAGCAGGTGGATGAGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCTAAGAAAGGGTGTTGTATGCGGACAAGAGCAGGTGGATGAGCAG  700

seq1  TGACGTAACCTATGCTTCTAGATTTGCACACATTTATCCAAGAAATCGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGTAACCTATGCTTCTAGATTTGCACACATTTATCCAAGAAATCGTT  750

seq1  CCATTCTCTTGGGATGTGTCTTCCTGTTCAGACCCTTGGTGGAGAGCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTCTTGGGATGTGTCTTCCTGTTCAGACCCTTGGTGGAGAGCTCT  800

seq1  AGAGTTAGTTACCCAACTGGCACACAGTGTGTCTGTATCGCCTGTTGCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTAGTTACCCAACTGGCACACAGTGTGTCTGTATCGCCTGTTGCTG  850

seq1  GGATATCTCAACTACTGAGATCTCGTGAGATTCTGTAGCTTCCAGGATTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATCTCAACTACTGAGATCTCGTGAGATTCTGTAGCTTCCAGGATTC  900

seq1  ACCTACGAAGCCCTCCAATGAGCAGCCCCCAAGCTCATTCCTTCTGTGAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACGAAGCCCTCCAATGAGCAGCCCCCAAGCTCATTCCTTCTGTGAT  950

seq1  TACGATGAGCACAATAGCCACGATCATTAGGACATGGTCCCTGTGTGAAA  1000
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TACGATGAGCAC-ATAGCCACGATCATTAGGACATGGTCCCTGTGTGAAA  999

seq1  GGCCT-CTCTTCTCCAGCCTGGGACACTGG-TGAGAGGCGATGGAACCTT  1048
      ||||| ||||||||||||   ||||||||| ||||| |||||| | | ||
seq2  GGCCTCCTCTTCTCCAGC--TGGACACTGGTTGAGA-GCGATGAACCTTT  1046

seq1  TTTCAGGCGAGTTCAAGAGAAGGCAATTGGGTCCCTG-CAGTTGTACCCT  1097
      ||||||||||||||| |||| ||||| ||| |||||| ||||||||||| 
seq2  TTTCAGGCGAGTTCAGGAGAGGGCAA-TGGTTCCCTGCCAGTTGTACCC-  1094

seq1  TGAAGGGGAT-AAGGAGACCTTGGGTCTTCCCAGTCTG-TCTC  1138
      |||| ||||| |||||||||||||| |||  ||||||| ||||
seq2  TGAAAGGGATAAAGGAGACCTTGGGACTT--CAGTCTGCTCTC  1135

seq1: chr17_15925913_15926240
seq2: B6Ng01-178E23.g_229_753 (reverse)

seq1  CCATCCCATATACAGTCACCAAACCCAGACACTATTGTGGATGCCAACAA  50
      |||| ||||||  |||||||||||||||||||||||||||||||||||||
seq2  CCATACCATAT--AGTCACCAAACCCAGACACTATTGTGGATGCCAACAA  48

seq1  GAGCTTGCTGACAGGCGCCTGATGTAGCTGTC---------------CCC  85
      | ||||||||||||| ||||||| ||||||||               || 
seq2  GTGCTTGCTGACAGGAGCCTGATATAGCTGTCTCCTAAGAGGCTCTGCCA  98

seq1  GT-CCTGAGTCTTACAGAGG----TGCTC--------CCTTTGG------  116
      || |||||    ||||||||    |||||        || ||||      
seq2  GTGCCTGACAAATACAGAGGTAGATGCTCTCAGCCAGCCATTGGACTGAG  148

seq1  ----------GAAGGGA--TGCTTCAGACAGGCTCTGTATTGGTGTCACG  154
                 || |||   |||  ||| |||  |   |  | ||  | |
seq2  CATAGGATCCCAATGGAGGAGCTAGAGAAAGGACCCAAAGAGCTG--AAG  196

seq1  GA-TGTGCTGCTCCAT-----GACCACTAAT---------TCA-------  182
       | | ||| || ||||     || ||  |||         |||       
seq2  AAGTTTGCAGCCCCATAGGAGGAACAACAATATGAACCAATCAGTACCCC  246

seq1  -AGTGGTT-------TTAAAGTGCTTTTCTGAA------ATCTTGAGGAT  218
       || | ||        |||| |  |   || ||      |  | ||||  
seq2  CAGAGCTTCCAGGAACTAAACT-ATCAACTAAAGAGTACACATGGAGGGA  295

seq1  T-------TTAAGATGCCCTGTGTAATAGTGAAAAACAT-----------  250
      |       |  || || | | ||||  || | | | | |           
seq2  TCCATGGCTCCAGCTG-CATATGTAGCAGAGGATAGCCTGGTTGGACCTC  344

seq1  -----------------------CTGGGAAG--TT---------------  260
                             ||||||||  ||               
seq2  AATGGGAGGATAGGCCCTTAGTCCTGGGAAGGCTTGATGCCCCAGTATAG  394

seq1  ---AATTT-------------TGG----AGGTCCCT------GCAA----  280
         ||| |             |||    ||||   |      ||||    
seq2  GGGAATGTCAGGACAAGGAAGTGGGAGTAGGTGGGTTGGTGAGCAAGGGG  444

seq1  -------ACTCTACTGCTGGTTTT-----------------------ATT  300
             |    |  | |||||||                       || 
seq2  AGAAGGGATGGGATAGGTGGTTTTCTGAGGGGAAACAAGGAAAGGGGATA  494

seq1  T---ATTTGAAATGTAAATAAAGAAAATATC  328
      |   |||||||||||||||||||||||||||
seq2  TAACATTTGAAATGTAAATAAAGAAAATATC  525