BAC Information

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BAC

Clone NameB6Ng01-178F07
Chromosome11 (Build37)17 (Build37)
Map Location 114,391,303 - 114,391,42418,949,887 - 18,951,030
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSlc39a11, Sstr2, Cog1, D11Wsu99e, D11Wsu47e, D11Ertd636e, Cdc42ep4, Sdk2, LOC100041739, LOC634710, 4932435O22Rik
Downstream geneRpl38, Ttyh2, Dnaic2, Kif19a, 1500005I02Rik, Gpr142, Gprc5c, Cd300a, Cd300lb, Cd300c, 4732429D16Rik, Cd300d, LOC629970, LOC100043123, LOC100043125, Clm3, Cd300e, Cd300lf, Rab37, Slc9a3r1, Nat9, Tmem104, Grin2c, Fdxr, Fads6, Otop2, Ush1g, Otop3, C630004H02Rik, Cdr2l, Ict1, Atp5h, Kctd2, 4933422H20Rik, Slc16a5, Armc7, Nt5c, Hn1, Sumo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178F07.bB6Ng01-178F07.g
ACCGA005348GA005349
length5021,139
definitionB6Ng01-178F07.b B6Ng01-178F07.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(114,391,303 - 114,391,424)(18,949,887 - 18,951,030)
sequence
gaattctttggtttttactgagttccttgatccacttggtattgagtatt
ctgcaagttgataattacagatcttttttcatattgctaaatacatactg
ttaattagactaggatcattcatagaatatccttccttaccttccttcct
tccttccttccttccttccttccttccttccttcctttctttttctttct
ttctttctttctttctttctttctttctttctttctttctttctttcttt
ttttttctttctttctttatctctctttctttccttctttcttttttatt
gtgtgttattggcttcattgaaaatataaagtgtcctgccaggtgtgttg
gtgcacatctttaatcccagcagatgcaggcagatttcttagttcaagac
tggcctggtctacaaagtgagttctaggacatccagggatatacagagga
accctgtctagctatatatatatatatatatatatatatatatatatata
ta
gaattccgtatatgcagggaattaaataacaatcactaataactgagcag
attaactcaatatctacagtcacagaagagtgatcagagtccacttccct
aaaacagacttgatcactccctttttcatacctaattcacaaagcacatg
cttcataaaaatatattttgaaaatgaaaactatttttatcatttatata
cttgagattataaaatgattgcataatttccccctttcattctttccagg
taaattcttatgtacttccttaatcattttaatttcatggagtcttcttc
cattaattgcccaggaggactcgaacttgctagtcatgcatacacacaca
tgcaaacatccactcacaggtacaactagaaaaactcacaaacacacaaa
catacctgtatcctcacacagacacacacacacacacacacaaaaaaaaa
aaaaacagaagcatccctttgaatgcacacacacacacacacacacacaa
attgtaggtaactaatgaatgatgtgaaatagtttcctcaatgtttaata
ttcttccacaggaaagattataattttccacatgaaagattttatgtaaa
ttctctctacatctgtcttattagttacagaatgtaaatgttttagctgg
atgcacaaatatacttctaaaagatgaatggtaaaataaacgttacagtg
ctgacaaaatggtccatcaatccttaccacagtgagaacttgccaaacaa
acttatgctgcaagcctgaaatatatgctatgagctacttttgtttgcat
ttttaaatttgattgactataacgctgcagattatgtcttccttagacta
cacacagagaaaaagagagctcacaaaaacgacattactgtcaagggaca
agtacaaatgttatgaatgaaaggcaagtggttacaacagcttagcacca
agaagaacttttgtagttaattcaaataaaatagggccatgaaggaattc
tgtttgcattaaataacagtcaatatttttatactgaaaactgcatttct
gaaattcaagagagtggagatcagtataaaggcattcagaatccacaata
tagtttaggatggcatatttactgctaattatactgaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_114391303_114391424
seq2: B6Ng01-178F07.b_179_299 (reverse)

seq1  AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA  50

seq1  AGAAAGAAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAG  100
      ||||||||  ||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAA--AAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAG  98

seq1  GAAGGAAGGAAGG-AAGGAAGGA  122
      ||||||||||||| |||||||||
seq2  GAAGGAAGGAAGGTAAGGAAGGA  121

seq1: chr17_18949887_18951030
seq2: B6Ng01-178F07.g_65_1203 (reverse)

seq1  TCTCAGGTAT-ATTAGCAGTAAATATGGCCCATTCCTAACTATATTGT-G  48
      ||||| |||| ||||||||||||||||  |||| |  ||||||||||| |
seq2  TCTCA-GTATAATTAGCAGTAAATATG--CCATCCTAAACTATATTGTGG  47

seq1  ATTCTGAATTGGCTTTATACTTGATCT-CACTCTTCCTTTGAATTTCAGA  97
      |||||||| || |||||||| |||||| ||||||    ||||||||||||
seq2  ATTCTGAA-TGCCTTTATAC-TGATCTCCACTCT---CTTGAATTTCAGA  92

seq1  AATGCAGTTTTCAGTAT-AAAATATTGACTGTTATTTAATGCAAACAGAA  146
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AATGCAGTTTTCAGTATAAAAATATTGACTGTTATTTAATGCAAACAGAA  142

seq1  TTCCTTCATGGCCCTATTTTTATTTGAATTAACTACAAAAGTTCTTTCTT  196
      |||||||||||||||| ||||||||||||||||||||||||||| |||||
seq2  TTCCTTCATGGCCCTA-TTTTATTTGAATTAACTACAAAAGTTC-TTCTT  190

seq1  GGTGCCTAAGCTGTTGTAACCACTTGCC-TTCATTCATAACATTTGTACT  245
      |||| ||||||||||||||||||||||| |||||||||||||||||||||
seq2  GGTG-CTAAGCTGTTGTAACCACTTGCCTTTCATTCATAACATTTGTACT  239

seq1  TGT-CCTTGACAGTAATGTCGTTTTTGTGAGCTCTCTTTTTCTCTGTGTG  294
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCTTGACAGTAATGTCGTTTTTGTGAGCTCTCTTTTTCTCTGTGTG  289

seq1  TAGTCTAAGGAAGACATAATCTGCAGCGTTATAGTCAATCAAATTTAAAA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTAAGGAAGACATAATCTGCAGCGTTATAGTCAATCAAATTTAAAA  339

seq1  ATGCAAACAAAAGTAGCTCATAGCATATATTTCAGGCTTGCAGCATAAGT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAACAAAAGTAGCTCATAGCATATATTTCAGGCTTGCAGCATAAGT  389

seq1  TTGTTTGGCAAGTTCTCACTGTGGTAAGGATTGATGGACCATTTTGTCAG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGGCAAGTTCTCACTGTGGTAAGGATTGATGGACCATTTTGTCAG  439

seq1  CACTGTAACGTTTATTTTACCATTCATCTTTTAGAAGTATATTTGTGCAT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTAACGTTTATTTTACCATTCATCTTTTAGAAGTATATTTGTGCAT  489

seq1  CCAGCTAAAACATTTACATTCTGTAACTAATAAGACAGATGTAGAGAGAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTAAAACATTTACATTCTGTAACTAATAAGACAGATGTAGAGAGAA  539

seq1  TTTACATAAAATCTTTCATGTGGAAAATTATAATCTTTCCTGTGGAAGAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATAAAATCTTTCATGTGGAAAATTATAATCTTTCCTGTGGAAGAA  589

seq1  TATTAAACATTGAGGAAACTATTTCACATCATTCATTAGTTACCTACAAT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAACATTGAGGAAACTATTTCACATCATTCATTAGTTACCTACAAT  639

seq1  TTGTGTGTGTGTGTGTGTGTGTGTGCATTCAAAGGGATGCTTCTGTTTTT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGTGTGTGTGTGTGTGTGTGCATTCAAAGGGATGCTTCTGTTTTT  689

seq1  TTTTTTTTTGTGTGTGTGTGTGTGTGTGTCTGTGTGAGGATACAGGTATG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTGTGTGTGTGTGTGTGTGTGTCTGTGTGAGGATACAGGTATG  739

seq1  TTTGTGTGTTTGTGAGTTTTTCTAGTTGTACCTGTGAGTGGATGTTTGCA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTGTTTGTGAGTTTTTCTAGTTGTACCTGTGAGTGGATGTTTGCA  789

seq1  TGTGTGTGTATGCATGACTAGCAAGTTCGAGTCCTCCTGGGCAATTAATG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTATGCATGACTAGCAAGTTCGAGTCCTCCTGGGCAATTAATG  839

seq1  GAAGAAGACTCCATGAAATTAAAATGATTAAGGAAGTACATAAGAATTTA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGACTCCATGAAATTAAAATGATTAAGGAAGTACATAAGAATTTA  889

seq1  CCTGGAAAGAATGAAAGGGGGAAATTATGCAATCATTTTATAATCTCAAG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAAAGAATGAAAGGGGGAAATTATGCAATCATTTTATAATCTCAAG  939

seq1  TATATAAATGATAAAAATAGTTTTCATTTTCAAAATATATTTTTATGAAG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAATGATAAAAATAGTTTTCATTTTCAAAATATATTTTTATGAAG  989

seq1  CATGTGCTTTGTGAATTAGGTATGAAAAAGGGAGTGATCAAGTCTGTTTT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGCTTTGTGAATTAGGTATGAAAAAGGGAGTGATCAAGTCTGTTTT  1039

seq1  AGGGAAGTGGACTCTGATCACTCTTCTGTGACTGTAGATATTGAGTTAAT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGTGGACTCTGATCACTCTTCTGTGACTGTAGATATTGAGTTAAT  1089

seq1  CTGCTCAGTTATTAGTGATTGTTATTTAATTCCCTGCATATACGGAATTC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCAGTTATTAGTGATTGTTATTTAATTCCCTGCATATACGGAATTC  1139