BAC Information

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BAC

Clone NameB6Ng01-178H19
Chromosome17 (Build37)
Map Location 22,827,396 - 22,828,256
singlet/doubletsinglet
Overlap geneENSMUSG00000046088
Upstream geneZfp760, BC043476, 4930515G13Rik, 2610036F08Rik, LOC624960, 3110048L19Rik, 4930432O21Rik, LOC665820, LOC665825, LOC674332, LOC631010, EG665844, EG210853, LOC671007, EG240038, EG631624, 6330416L07Rik, Zfp758, 1300003B13Rik, EG210876, LOC100042656, EG628185
Downstream geneEG383218, EG433078, LOC100042679, A630033E08Rik, LOC671128, LOC665961, EG434701, LOC665976, LOC100042225, LOC100042234, EG665988, LOC100042248, Zfp40, LOC100042257, LOC100042261, Vmn2r-ps133, EG666002, EG638102, EG619697, EG619775, EG619788, Olfr752-ps1, EG666030, EG381070, Zfp213, Zfp13, Zscan10, LOC666062, Mmp25, LOC665757, BC038613, Thoc6, Hcfc1r1, Tnfrsf12a, Cldn6, Cldn9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178H19.bB6Ng01-178H19.g
ACCGA005460GA005461
length1,0091,192
definitionB6Ng01-178H19.b B6Ng01-178H19.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatacaggtgagaaaccttacaaatgaatgtgccaaatgctttac
tgagaaaggcaaacttagaagtcatcaaagaatccatacaggagagaaac
cttacaaatgtagtgaatgtgacaaatgcttttccagtaaatactttctt
agaaatcatcagaaaaatcatacaggagagaaacattacagatgaggtga
atggaacaaatgttttacccagaaatcctgtcttagatgtcatcaaagaa
ttcatataggagagaaacatttatcagagatacaagcagttgttagaaca
gttattgcaaaggaattgcaaataaagggacagaaaatgctatatctgaa
tcctatttatattttaatttggggcctgctcccaaagcaaacctgtctgc
tttttaaacaagagaactagtggttttaactaataaattaaccattaaac
taacacagtactggactaccttgatttaaggaggtagttgcctattgtcc
atctcttaagctacaagaagctttcagtgtgatcagagaacttgaagtat
aaattgtaataaactgtctgtggggtcatatttatactccatcatcattc
atcctttcatgtatccactatagcaagacatcattttatctgtgactgat
ttcgcaagacattctttcacctgtgtgccccagcaaaacatcatttaaaa
taactgactttccaaacaaacaaaaactttttacttcaggttctacttaa
aacgaccctggcagtgggttaggcattgaggcagttatacccagtggtta
tggtatcacactcctggcggtgtcctttcctgtgcccttttcttcttgga
gaactttcggaggtagggtgattgctaagatttgggagttcctgttaata
agtttaaacatgttaaatgccatatgcaacagatctctgtttggtttgag
ggccagtatctacttagtctttctgacttaacaatctttattttcatcat
ctatctaaa
gaattcacacaggagagaaaccttacaaatgtagtaaatgtgacaaacat
tttaccaccaaaggtgaacttaaaaatcatcagagaattcatataggaga
gaaaccttacaaatgtagtgaatgtggaaaatactttacccaaaaaggga
gtcttattattcatcagagaattcatacaggagagaaaccttacaaatgt
agtgaatgtgacaaatgctttacccaaaaatgcagtcttatttttcatca
gagagttcatacaggagagaatcctcacaaatgtagtgaatgtgacaaat
gcttcaccctcaaaagtgatcttagagttcatcagagaattcacacagga
gagaaaccttacaaatgtaatgaatgtgacacgtcttttatcaagaaatc
caatcttagaagacatcagagaattcatacaggagagaaaccttacaaat
gtaacgaatgtgaaaaatcctttacccacaaatgcagtcttagcattcat
cagagaagtcatacaggagaaagaccttacaagtgtagtgaatgtgacaa
acgctttaccaacaaaggctaccttgtaagtcatcagaggaatcatacag
gagagaaaccttacaaatgtgatgaatgtgacaaatgttttacccacaaa
tgcagtcttagtattcatcagagatctcatacagaagagaaaccttacat
atgtagtgaatgtggtaaattctttagccacaaaagtagtcttcacactc
atcagagaatacatacagtagagaaaatttacaaatgaagtgaatgagac
aaattctataccaagaaatataccaaagcttacatattggagagaaacct
cacaaacataatgtaagatgaaaggtctttacctgtatttcaggtctaag
aaaatatctgaacatttatagtgggaaaaagtttccaaccgacaaaaatg
acatgtgatttatccaagcagttattctttgcaacaactttgagctccac
acaaagaattatcatgaaaacaagaaactgtgaaagtcttttatgtcaat
cttacagctatgctgagaaaaacactggaaatgtgaccctggaatgaaaa
attccatgtactctttaaatggcttaacctcaaattcatatgagacaaat
gaagcccaaagaaacatgtgaacttgtgttaacaggatttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_22827396_22828256
seq2: B6Ng01-178H19.b_39_899

seq1  GAATTCATACAGGTGAGAAACCTTACAAATGAATGTGCCAAATGCTTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACAGGTGAGAAACCTTACAAATGAATGTGCCAAATGCTTTAC  50

seq1  TGAGAAAGGCAAACTTAGAAGTCATCAAAGAATCCATACAGGAGAGAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAGGCAAACTTAGAAGTCATCAAAGAATCCATACAGGAGAGAAAC  100

seq1  CTTACAAATGTAGTGAATGTGACAAATGCTTTTCCAGTAAATACTTTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAAATGTAGTGAATGTGACAAATGCTTTTCCAGTAAATACTTTCTT  150

seq1  AGAAATCATCAGAAAAATCATACAGGAGAGAAACATTACAGATGAGGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCATCAGAAAAATCATACAGGAGAGAAACATTACAGATGAGGTGA  200

seq1  ATGGAACAAATGTTTTACCCAGAAATCCTGTCTTAGATGTCATCAAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAACAAATGTTTTACCCAGAAATCCTGTCTTAGATGTCATCAAAGAA  250

seq1  TTCATATAGGAGAGAAACATTTATCAGAGATACAAGCAGTTGTTAGAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATAGGAGAGAAACATTTATCAGAGATACAAGCAGTTGTTAGAACA  300

seq1  GTTATTGCAAAGGAATTGCAAATAAAGGGACAGAAAATGCTATATCTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTGCAAAGGAATTGCAAATAAAGGGACAGAAAATGCTATATCTGAA  350

seq1  TCCTATTTATATTTTAATTTGGGGCCTGCTCCCAAAGCAAACCTGTCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATTTATATTTTAATTTGGGGCCTGCTCCCAAAGCAAACCTGTCTGC  400

seq1  TTTTTAAACAAGAGAACTAGTGGTTTTAACTAATAAATTAACCATTAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAACAAGAGAACTAGTGGTTTTAACTAATAAATTAACCATTAAAC  450

seq1  TAACACAGTACTGGACTACCTTGATTTAAGGAGGTAGTTGCCTATTGTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACAGTACTGGACTACCTTGATTTAAGGAGGTAGTTGCCTATTGTCC  500

seq1  ATCTCTTAAGCTACAAGAAGCTTTCAGTGTGATCAGAGAACTTGAAGTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTAAGCTACAAGAAGCTTTCAGTGTGATCAGAGAACTTGAAGTAT  550

seq1  AAATTGTAATAAACTGTCTGTGGGGTCATATTTATACTCCATCATCATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTAATAAACTGTCTGTGGGGTCATATTTATACTCCATCATCATTC  600

seq1  ATCCTTTCATGTATCCACTATAGCAAGACATCATTTTATCTGTGACTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTCATGTATCCACTATAGCAAGACATCATTTTATCTGTGACTGAT  650

seq1  TTCGCAAGACATTCTTTCACCTGTGTGCCCCAGCAAAACATCATTTAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGCAAGACATTCTTTCACCTGTGTGCCCCAGCAAAACATCATTTAAAA  700

seq1  TAACTGACTTTCCAAACAAACAAAAACTTTTTACTTCAGGTTCTACTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGACTTTCCAAACAAACAAAAACTTTTTACTTCAGGTTCTACTTAA  750

seq1  AACGACCCTGGCAGTGGGTTAGGCATTGAGGCAGTTATACCCAGTGGTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGACCCTGGCAGTGGGTTAGGCATTGAGGCAGTTATACCCAGTGGTTA  800

seq1  TGGTATCACACTCCTGGCGGTGTCCTTTCCTGTGCCCTTTTCTTCTTGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATCACACTCCTGGCGGTGTCCTTTCCTGTGCCCTTTTCTTCTTGGA  850

seq1  GAACTTTCGGA  861
      |||||||||||
seq2  GAACTTTCGGA  861