BAC Information

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BAC

Clone NameB6Ng01-178K11
Chromosome17 (Build37)
Map Location 27,848,474 - 27,991,326
singlet/doubletdoublet
Overlap geneSpdef, LOC100042744, D17Wsu92e, EG666682, Snrpc
Upstream geneA930001N09Rik, Bnip1, Nkx2-5, Kifc1, Phf1, Cuta, Syngap1, Zbtb9, Bak1, Ggnbp1, Itpr3, 2900010M23Rik, Ihpk3, Lemd2, LOC100042713, ENSMUSG00000073430, Grm4, LOC677010, Hmga1, AI413582, Nudt3, Rps10, Pacsin1
Downstream geneF830021D11Rik, Taf11, Anks1, Tcp11, 4930526A20Rik, Scube3, LOC100042764, Zfp523, Def6, Ppard, 1810013A23Rik, Fance, Rpl10a, Tead3, Tulp1, Fkbp5, 4930511I11Rik, Gm749, Clps, Tmhs, Srpk1, Slc26a8, Mapk14, LOC100043318, Mapk13, Brpf3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178K11.bB6Ng01-178K11.g
ACCGA005580GA005581
length1,185572
definitionB6Ng01-178K11.b B6Ng01-178K11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,848,474 - 27,849,664)(27,990,784 - 27,991,326)
sequence
gaattctaaaaagccattgctcaggcctcctgaggagaacactggatctt
cacggctctcctggagtttacccccgctgtgaacatgtgtcctcgaaggc
cccctgggagtatctgtgctggcaagctagagctcagctctccacgccct
gtcgggcccaggtctggaactctgatgcccacttacacctcagctaggtc
ttttctgagacccgaggccccctcccagtgtctgtggggtgtctcgaagg
ttcctctgaccctggcggtctcatgggaccgcgcgcgcgcgcgcgcgcgc
gcacacacacacacagcccctccgccatcactttcccgtaccctaggtgc
aaacggtgagaggggaagctgggatagccgtccatctgccttgataacct
taagcctatccatgtctgaagcccactcttatccagacaggactggtctc
tcttatttatttcattatctcccttcatcttgaaaaacaatttatttaca
tttctatataatgtgtgtgagggtttgagggccaagagcaggtttgagca
tgcgcacatgtgcctccacacaaacccgcacaggaggtcagagggcaacc
ttgtgcttcctgatatgaaccatcctcccttccttctccctcctcctctc
ttccctcccccttccttcctttccttcctccatctctctctttcgttcct
ttctttttcttgtctttgctttgctcaaattagagtcttgggctgtagag
acagctcagcaattaagggtaccagctgctctagcagaggactcagttca
atcctcaacacccacatcatgtctgcttacaaccttctgtgactccagtt
ccagggaatccaacactctcttctgacctctgtgggcggatcgtacatgt
ggtatacaggcatatacgcatacccaaagtaaatctaaaataaagtaata
ataaaaaacaaaagtcttgtgtagctgacctcgaaatggctgtgtagctg
agggtgatcctctgctccagttcccaaatattaggcatacagatttaggt
cctcctggccagcccagggatcttagagtccaaggtggtggcctccttag
tccacataagcctgttccagttgttcggggaagcctgtgaatgaactcca
aaaggattcaggaatgtctatgcagaaaggttttg
aaggttgtcctcagctctatagtcatttctaagacaacccaggttccagg
tgaccagtatctttatttttctgcatacacaccagaagagggcatcagat
tccattagagatggttatgttccaccatgtggttgctggggattgaagtc
aggacctgtggaagattagacagtgctctttacctctgagctatctctcc
agcctggagaccatatcttgaaaaaatggaagggaaattggagagatggc
taggtaaataagagcactggctgctcttcctgagttcaattcccacctct
gacaccctcacacatatacatgcaggcaaaatgccaatgaacataaaatg
aaaataagttacataaaaaaactaaaaaattgtttgttttgtttttttcc
agacagggtttctgtttgtctgagaatttgctctttagagaaggctggcc
tcgaactcagtaatctacctacctctgcctctgagtgctaggactaaagg
catgcactacatatcacttagctgagtaatgagcttgcccatttttgcca
attggattttttggaccgagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_27848474_27849664
seq2: B6Ng01-178K11.b_43_1227

seq1  GAATTCTAAAAAGCCATTGCTCAGGCCTCCTGAGGAGAACACTGGATCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAAAAGCCATTGCTCAGGCCTCCTGAGGAGAACACTGGATCTT  50

seq1  CACGGCTCTCCTGGAGTTTACCCCCGCTGTGAACATGTGTCCTCGAAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGCTCTCCTGGAGTTTACCCCCGCTGTGAACATGTGTCCTCGAAGGC  100

seq1  CCCCTGGGAGTATCTGTGCTGGCAAGCTAGAGCTCAGCTCTCCACGCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGGGAGTATCTGTGCTGGCAAGCTAGAGCTCAGCTCTCCACGCCCT  150

seq1  GTCGGGCCCAGGTCTGGAACTCTGATGCCCACTTACACCTCAGCTAGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGGCCCAGGTCTGGAACTCTGATGCCCACTTACACCTCAGCTAGGTC  200

seq1  TTTTCTGAGACCCGAGGCCCCCTCCCAGTGTCTGTGGGGTGTCTCGAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGAGACCCGAGGCCCCCTCCCAGTGTCTGTGGGGTGTCTCGAAGG  250

seq1  TTCCTCTGACCCTGGCGGTCTCATGGGACCGCGCGCGCGCGCGCGCGCGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTGACCCTGGCGGTCTCATGGGACCGCGCGCGCGCGCGCGCGCGC  300

seq1  GCACACACACACACAGCCCCTCCGCCATCACTTTCCCGTACCCTAGGTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACACACACACAGCCCCTCCGCCATCACTTTCCCGTACCCTAGGTGC  350

seq1  AAACGGTGAGAGGGGAAGCTGGGATAGCCGTCCATCTGCCTTGATAACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGGTGAGAGGGGAAGCTGGGATAGCCGTCCATCTGCCTTGATAACCT  400

seq1  TAAGCCTATCCATGTCTGAAGCCCACTCTTATCCAGACAGGACTGGTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCTATCCATGTCTGAAGCCCACTCTTATCCAGACAGGACTGGTCTC  450

seq1  TCTTATTTATTTCATTATCTCCCTTCATCTTGAAAAACAATTTATTTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTTATTTCATTATCTCCCTTCATCTTGAAAAACAATTTATTTACA  500

seq1  TTTCTATATAATGTGTGTGAGGGTTTGAGGGCCAAGAGCAGGTTTGAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATATAATGTGTGTGAGGGTTTGAGGGCCAAGAGCAGGTTTGAGCA  550

seq1  TGCGCACATGTGCCTCCACACAAACCCGCACAGGAGGTCAGAGGGCAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCACATGTGCCTCCACACAAACCCGCACAGGAGGTCAGAGGGCAACC  600

seq1  TTGTGCTTCCTGATATGAACCATCCTCCCTTCCTTCTCCCTCCTCCTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCTTCCTGATATGAACCATCCTCCCTTCCTTCTCCCTCCTCCTCTC  650

seq1  TTCCCTCCCCCTTCCTTCCTTTCCTTCCTCCATCTCTCTCTTTCGTTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCCCCCTTCCTTCCTTTCCTTCCTCCATCTCTCTCTTTCGTTCCT  700

seq1  TTCTTTTTCTTGTCTTTGCTTTGCTCAAATTAGAGTCTTGGGCTGTAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTCTTGTCTTTGCTTTGCTCAAATTAGAGTCTTGGGCTGTAGAG  750

seq1  ACAGCTCAGCAATTAAGGGTACCAGCTGCTCTAGCAGAGGACTCAGGTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ACAGCTCAGCAATTAAGGGTACCAGCTGCTCTAGCAGAGGACTCA-GTTC  799

seq1  AATCCTCAACACCCACATCATGTCTGCTTACAACCTTCTGTGACTCCAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTCAACACCCACATCATGTCTGCTTACAACCTTCTGTGACTCCAGT  849

seq1  TCCAGGGAATCCAACACTCTCTTCTGACCTCTGTGGGCGGATCGTACATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGGAATCCAACACTCTCTTCTGACCTCTGTGGGCGGATCGTACATG  899

seq1  TGGTATACAGGCATATACGCATACCCAAAGTAAATCTAAAATAAAGTAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATACAGGCATATACGCATACCCAAAGTAAATCTAAAATAAAGTAAT  949

seq1  AATAAAAAACAAAAGTCTTGTGTAGCTGACCTCGAAATGGCTGTGTAGCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAAACAAAAGTCTTGTGTAGCTGACCTCGAAATGGCTGTGTAGCT  999

seq1  GAGGGTGATCTCCTGCCTCCAGTTCCCAAATATTAGCATTACAGATTTAG  1050
      ||||||||||  ||| ||||||||||||||||||||   |||||||||||
seq2  GAGGGTGATCCTCTG-CTCCAGTTCCCAAATATTAGGCATACAGATTTAG  1048

seq1  GTCTCCTTGCCCAGCCCA-GGATCTTAGAGTCCAAAGGTGGTGGCCT-CT  1098
      |||  | || |||||||| |||||||||||||| ||||||||||||| ||
seq2  GTCCTCCTGGCCAGCCCAGGGATCTTAGAGTCC-AAGGTGGTGGCCTCCT  1097

seq1  TAGT-CACAT-AGGCTGTTCCAGTTTGTTTGGGGGAGCCCTGAAATGAAA  1146
      |||| ||||| || ||||||||| ||||| |||| ||||    |||| ||
seq2  TAGTCCACATAAGCCTGTTCCAG-TTGTTCGGGGAAGCCTGTGAATG-AA  1145

seq1  CTTCCAAAAAGGAGTCAGGAAATGTCTATGCCAGGAGAGGTTTTG  1191
      ||  | ||||||| ||||| |||||||||||   || ||||||||
seq2  CT--CCAAAAGGATTCAGG-AATGTCTATGC--AGAAAGGTTTTG  1185

seq1: chr17_27990784_27991326
seq2: B6Ng01-178K11.g_98_642 (reverse)

seq1  AACTCGGTCC-AAAAATCCAATTGGC-AAAATGGGCAAGCTCATTACTCA  48
      |||||||||| ||||||||||||||| |||||||||||||||||||||||
seq2  AACTCGGTCCAAAAAATCCAATTGGCAAAAATGGGCAAGCTCATTACTCA  50

seq1  GCTGAGTGTTATGTAGTGCATGCCTTTAGTCCTAGCACTCAGAGGCAGAG  98
      ||| |||| |||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGTGATATGTAGTGCATGCCTTTAGTCCTAGCACTCAGAGGCAGAG  100

seq1  GTAGGTAGATTGCTGAGTTCGAGGCCAGCCTTCTCTAAAGAGCAAATTCT  148
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTAGATTACTGAGTTCGAGGCCAGCCTTCTCTAAAGAGCAAATTCT  150

seq1  CAGACAAACAGAAACCCTGTCTGGAAAAAAACAAAACAAACAATTTTTTA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAAACAGAAACCCTGTCTGGAAAAAAACAAAACAAACAATTTTTTA  200

seq1  GTTTTTTTATGTAACTTATTTTCATTTTATGTTCATTGGCATTTTGCCTG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTATGTAACTTATTTTCATTTTATGTTCATTGGCATTTTGCCTG  250

seq1  CATGTATATGTGTGAGGGTGTCAGAGGTGGGAATTGAACTCAGGAAGAGC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATATGTGTGAGGGTGTCAGAGGTGGGAATTGAACTCAGGAAGAGC  300

seq1  AGCCAGTGCTCTTATTTACCTAGCCATCTCTCCAATTTCCCTTCCATTTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGTGCTCTTATTTACCTAGCCATCTCTCCAATTTCCCTTCCATTTT  350

seq1  TTCAAGATATGGTCTCCAGGCTGGAGAGATAGCTCAGAGGTAAAGAGCAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGATATGGTCTCCAGGCTGGAGAGATAGCTCAGAGGTAAAGAGCAC  400

seq1  TGTCTAATCTTCCACAGGTCCTGACTTCAATCCCCAGCAACCACATGGTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAATCTTCCACAGGTCCTGACTTCAATCCCCAGCAACCACATGGTG  450

seq1  GAACATAACCATCTCTAATGGAATCTGATGCCCTCTTCTGGTGTGTATGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATAACCATCTCTAATGGAATCTGATGCCCTCTTCTGGTGTGTATGC  500

seq1  AGAAAAATAAAGATACTGGTCACCTGGAACCTGGGTTGTCTTAGA  543
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATAAAGATACTGGTCACCTGGAACCTGGGTTGTCTTAGA  545