BAC Information

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BAC

Clone NameB6Ng01-178P16
Chromosome17 (Build37)
Map Location 4,837,391 - 5,016,506
singlet/doubletdoublet
Overlap genePpia-ps17_26.1, Arid1b
Upstream gene4930470H14Rik
Downstream gene5730437N04Rik, Ldhal6b, LOC100040282, LOC666919, LOC100040312, Zdhhc14, 3300005D01Rik, LOC100040342, LOC100040352, Snx9, LOC666951, Synj2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178P16.bB6Ng01-178P16.g
ACCGA005822GA005823
length9131,120
definitionB6Ng01-178P16.b B6Ng01-178P16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,837,391 - 4,838,301)(5,015,391 - 5,016,506)
sequence
gaattccagcgtatgaccccacggaggacattccaaactgtcataggagg
cacacgcttaacttttaaagaaactagtggacctattttagaaagcacta
ttatgtttatgccttatgaaaattcggaagcaaacttgccaatttttgat
gttgtggcgaaggttgttggttttagataaggtcttgctacgtagcccag
gctaccctcatgagcctcctatgccaccttcatcatcggtgaaaaattac
atttgcacaccactgtgcatgacaaatctttttctttctaaaataataaa
tgctagtttctttttgcaactgtccttttgtgtccctggcgagcagtcac
ctcagtcatccttatttacctgttgttctttcaagtattcagacagttta
cctattcgacattaggctgtttgtctttttttgctggattgtaggtactc
catgcaaatcttttctgagagtcctttgtcagatacatgcatagcaaata
ttcccttacatgctgtaggtttatgtttatttgacagtttttagagggtg
aatattttcagttgtgataaaattcaatataacattttttattattatta
cgtgactcaagttttttgtgtcagagaagtgtatgtattcctaaaagtca
tgggaacttgctcctatgttctctcctatttttatagtttaagttttgct
acttagttacgtaacccataatgcatggcttggttttgtatgcttttttt
tttctgtgctgtactttgtgctagttgcctgaattgtcaccctaaacccc
ctggaggaacctgagaagagatttcccagatcagactggcctgtagatgc
ctatagggcactgacttacttgttgattgatgcagatagcagtccactgg
gggggcggggggg

gaattccagcactcaggaggaagagccagggaggtctctgcaagttttaa
ggcagcctggtctacataacaaggctacagagagacctgtctcaaaaaag
acttaataaatgaataagaccatgtcaagaaatgaactcatctttatgca
ctacggccagtaaaggaagcctatttgcttggaagatgcataatcaattc
attacatgctttacaaacacctaaccctattaaaaaaaatgtttttaatt
tttaaaaaagggggaaggaggaaacataaaaaagtgttggtgtcccaggc
atggtggtgcacacctttcgtactagcactccggaagcagaggcagtcgg
atctctgtgagttcgaggacaacctggtctacaaagcgagtccaagacag
cctacacagagaaaccctgtctcggaaaagaacagtattggtgcttgctc
acaggaataaaaactgtatggagagtccttccggctctgtcagtgcctgc
tgtgggtgtttgccgtctcccacccttgtgcacatacaaaggcgcactga
ctgtggtgaccaacgttgtggatactcatatacacaaatatacacttgta
agcacttatgctcgtatatattcgtatatccctttgcttaggagatgtta
ccaatgttcagaagcataaaaataagccctggcttatttttaaccacaga
aaaacaaggccaatacataaatactgtttcctttctagaacacctctccc
catgctcctcagggagcagctatctcagcctcctacgccctgtgcttgcg
atgaaagggcctggagggccgggcgatctataaacttctgtttgctgtat
gttaagaaatcctaccctcggaacctagacagaagctttcaaatgaaaaa
cgggagaatacaaaaatatgaagtatccctcaattctcaaattaacattt
gctatgtttaaaatattttttaagtcagggctaatgagatggctcagcag
tttaagagcactggcctactcttaaagagggactaggtctcattcccagt
accacaatgatgggctcacgaccatccgtaactcagttccagagggccca
gtaccctccttctggctgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_4837391_4838301
seq2: B6Ng01-178P16.b_46_958

seq1  GAATTCCAGCGTATGACCCCACGGAGGACATTCCAAACTGTCATAGGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCGTATGACCCCACGGAGGACATTCCAAACTGTCATAGGAGG  50

seq1  CACACGCTTAACTTTTAAAGAAACTAGTGGACCTATTTTAGAAAGCACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACGCTTAACTTTTAAAGAAACTAGTGGACCTATTTTAGAAAGCACTA  100

seq1  TTATGTTTATGCCTTATGAAAATTCGGAAGCAAACTTGCCAATTTTTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTTATGCCTTATGAAAATTCGGAAGCAAACTTGCCAATTTTTGAT  150

seq1  GTTGTGGCGAAGGTTGTTGGTTTTAGATAAGGTCTTGCTACGTAGCCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGGCGAAGGTTGTTGGTTTTAGATAAGGTCTTGCTACGTAGCCCAG  200

seq1  GCTACCCTCATGAGCCTCCTATGCCACCTTCATCATCGGTGAAAAATTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCCTCATGAGCCTCCTATGCCACCTTCATCATCGGTGAAAAATTAC  250

seq1  ATTTGCACACCACTGTGCATGACAAATCTTTTTCTTTCTAAAATAATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCACACCACTGTGCATGACAAATCTTTTTCTTTCTAAAATAATAAA  300

seq1  TGCTAGTTTCTTTTTGCAACTGTCCTTTTGTGTCCCTGGCGAGCAGTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGTTTCTTTTTGCAACTGTCCTTTTGTGTCCCTGGCGAGCAGTCAC  350

seq1  CTCAGTCATCCTTATTTACCTGTTGTTCTTTCAAGTATTCAGACAGTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTCATCCTTATTTACCTGTTGTTCTTTCAAGTATTCAGACAGTTTA  400

seq1  CCTATTCGACATTAGGCTGTTTGTCTTTTTTTGCTGGATTGTAGGTACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTCGACATTAGGCTGTTTGTCTTTTTTTGCTGGATTGTAGGTACTC  450

seq1  CATGCAAATCTTTTCTGAGAGTCCTTTGTCAGATACATGCATAGCAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAAATCTTTTCTGAGAGTCCTTTGTCAGATACATGCATAGCAAATA  500

seq1  TTCCCTTACATGCTGTAGGTTTATGTTTATTTGACAGTTTTTAGAGGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTACATGCTGTAGGTTTATGTTTATTTGACAGTTTTTAGAGGGTG  550

seq1  AATATTTTCAGTTGTGATAAAATTCAATATAACATTTTTTATTATTATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTCAGTTGTGATAAAATTCAATATAACATTTTTTATTATTATTA  600

seq1  CGTGACTCAAGTTTTTTGTGTCAGAGAAGTGTATGTATTCCTAAAAGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGACTCAAGTTTTTTGTGTCAGAGAAGTGTATGTATTCCTAAAAGTCA  650

seq1  TGGGAACTTGCTCCTATGTTCTCTCCTATTTTTATAGTTTAAGTTTTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAACTTGCTCCTATGTTCTCTCCTATTTTTATAGTTTAAGTTTTGCT  700

seq1  ACTTAGTTACGTAACCCATAATGCATGGCTTGGTTTTGTATGC-TTTTTT  749
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ACTTAGTTACGTAACCCATAATGCATGGCTTGGTTTTGTATGCTTTTTTT  750

seq1  TTTCTGTGCTGTACTTTGTGCTAGTTGCCTGAATTGTCACCCTAAACCCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTGCTGTACTTTGTGCTAGTTGCCTGAATTGTCACCCTAAACCCC  800

seq1  CTGGAGGAACCTGAGAAGAGATTTCCCAGATCAGACTGGCCTGTAGATGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGGAACCTGAGAAGAGATTTCCCAGATCAGACTGGCCTGTAGATGC  850

seq1  CTATAGGGCACTGACTTACTTGTTGATTGATGCAGATAGCAGTCCACT-G  898
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTATAGGGCACTGACTTACTTGTTGATTGATGCAGATAGCAGTCCACTGG  900

seq1  GGGGGCGGGGGGG  911
      |||||||||||||
seq2  GGGGGCGGGGGGG  913


seq1: chr17_5015391_5016506
seq2: B6Ng01-178P16.g_66_1185 (reverse)

seq1  TGCAGGCAGAA-GAGGGTACTGGGGCCTCTGGAACTGGAGTTACGGATGG  49
      ||||| ||||| |||||||||||| ||||||||||| |||||||||||||
seq2  TGCAGCCAGAAGGAGGGTACTGGGCCCTCTGGAACT-GAGTTACGGATGG  49

seq1  TTGTGAG-CCATCATGTGGGTACTGGGAATTGAGACCTAGT-CCTCTGTA  97
      | ||||| |||||||   ||||||||||| ||||||||||| ||||| ||
seq2  TCGTGAGCCCATCATTGTGGTACTGGGAA-TGAGACCTAGTCCCTCTTTA  98

seq1  AGAGTA-GCCAGTGCTCTT-AACTGCTGAGCCATCTCATTAGCCCTGACT  145
      |||||| |||||||||||| ||||||||||||||||||||||||||||||
seq2  AGAGTAGGCCAGTGCTCTTAAACTGCTGAGCCATCTCATTAGCCCTGACT  148

seq1  TAAAAATATTTTTAAACATAGCAAATGTTAATTTGAGAATTGA-GGATAC  194
      ||||||   |||||||||||||||||||||||||||||||||| ||||||
seq2  TAAAAAATATTTTAAACATAGCAAATGTTAATTTGAGAATTGAGGGATAC  198

seq1  TTCATATTTTTTGTATTCT-CCGTTTTTCATTTTGAAGCTTCTGTCTAGG  243
      |||||| |||||||||||| |||||||||||||  |||||||||||||||
seq2  TTCATA-TTTTTGTATTCTCCCGTTTTTCATTTGAAAGCTTCTGTCTAGG  247

seq1  TTCCGAGGGTAGGATTTCTTAACATACAGCAAACAGAAGTTTATAGATCG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGAGGGTAGGATTTCTTAACATACAGCAAACAGAAGTTTATAGATCG  297

seq1  CCCGGCCCTCCAGGCCCTTTCATCGCAAGCACAGGGCGTAGGAGGCTGAG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGCCCTCCAGGCCCTTTCATCGCAAGCACAGGGCGTAGGAGGCTGAG  347

seq1  ATAGCTGCTCCCTGAGGAGCATGGGGAGAGGTGTTCTAGAAAGGAAACAG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTGCTCCCTGAGGAGCATGGGGAGAGGTGTTCTAGAAAGGAAACAG  397

seq1  TATTTATGTATTGGCCTTGTTTTTCTGTGGTTAAAAATAAGCCAGGGCTT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATGTATTGGCCTTGTTTTTCTGTGGTTAAAAATAAGCCAGGGCTT  447

seq1  ATTTTTATGCTTCTGAACATTGGTAACATCTCCTAAGCAAAGGGATATAC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATGCTTCTGAACATTGGTAACATCTCCTAAGCAAAGGGATATAC  497

seq1  GAATATATACGAGCATAAGTGCTTACAAGTGTATATTTGTGTATATGAGT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATATACGAGCATAAGTGCTTACAAGTGTATATTTGTGTATATGAGT  547

seq1  ATCCACAACGTTGGTCACCACAGTCAGTGCGCCTTTGTATGTGCACAAGG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACAACGTTGGTCACCACAGTCAGTGCGCCTTTGTATGTGCACAAGG  597

seq1  GTGGGAGACGGCAAACACCCACAGCAGGCACTGACAGAGCCGGAAGGACT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAGACGGCAAACACCCACAGCAGGCACTGACAGAGCCGGAAGGACT  647

seq1  CTCCATACAGTTTTTATTCCTGTGAGCAAGCACCAATACTGTTCTTTTCC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATACAGTTTTTATTCCTGTGAGCAAGCACCAATACTGTTCTTTTCC  697

seq1  GAGACAGGGTTTCTCTGTGTAGGCTGTCTTGGACTCGCTTTGTAGACCAG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGGGTTTCTCTGTGTAGGCTGTCTTGGACTCGCTTTGTAGACCAG  747

seq1  GTTGTCCTCGAACTCACAGAGATCCGACTGCCTCTGCTTCCGGAGTGCTA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCCTCGAACTCACAGAGATCCGACTGCCTCTGCTTCCGGAGTGCTA  797

seq1  GTACGAAAGGTGTGCACCACCATGCCTGGGACACCAACACTTTTTTATGT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACGAAAGGTGTGCACCACCATGCCTGGGACACCAACACTTTTTTATGT  847

seq1  TTCCTCCTTCCCCCTTTTTTAAAAATTAAAAACATTTTTTTTAATAGGGT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCTTCCCCCTTTTTTAAAAATTAAAAACATTTTTTTTAATAGGGT  897

seq1  TAGGTGTTTGTAAAGCATGTAATGAATTGATTATGCATCTTCCAAGCAAA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGTTTGTAAAGCATGTAATGAATTGATTATGCATCTTCCAAGCAAA  947

seq1  TAGGCTTCCTTTACTGGCCGTAGTGCATAAAGATGAGTTCATTTCTTGAC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTTCCTTTACTGGCCGTAGTGCATAAAGATGAGTTCATTTCTTGAC  997

seq1  ATGGTCTTATTCATTTATTAAGTCTTTTTTGAGACAGGTCTCTCTGTAGC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCTTATTCATTTATTAAGTCTTTTTTGAGACAGGTCTCTCTGTAGC  1047

seq1  CTTGTTATGTAGACCAGGCTGCCTTAAAACTTGCAGAGACCTCCCTGGCT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTATGTAGACCAGGCTGCCTTAAAACTTGCAGAGACCTCCCTGGCT  1097

seq1  CTTCCTCCTGAGTGCTGGAATTC  1116
      |||||||||||||||||||||||
seq2  CTTCCTCCTGAGTGCTGGAATTC  1120


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