BAC Information

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BAC

Clone NameB6Ng01-179H01
Chromosome17 (Build37)
Map Location 91,120,158 - 91,245,638
singlet/doubletdoublet
Overlap geneNrxn1
Upstream geneLOC100043906
Downstream geneEG668871, LOC668872, LOC627235, LOC100043741, LOC100043742
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179H01.bB6Ng01-179H01.g
ACCGA006158GA006159
length1,203921
definitionB6Ng01-179H01.b B6Ng01-179H01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,244,465 - 91,245,638)(91,120,158 - 91,121,077)
sequence
gaattcttttatgaagaaagtcatcctctaaaatacatttctaagccttg
atattttgtatccattgtttctctaaatttgtgttcaagttttttttcct
gtggaattgttcaaaattgtgactaatggtccaatacaaaccagaatgtg
aggaaacatatgttgcacttggtgttgtcaaaatcagtcattttctgttt
agcactgttttaaatggcccattacacatttggtgtatggaatcattttg
ggatatttactttgtctttgattctaaggatataaaggtcacaggctatg
aagttttcttagcatagtactagtgagtataccacaacagatcaaactcc
ctgtagctgtgtgtttagaaataatgaatcctattccagtaggacagaaa
cactagaactgaattggagaaggtttatttggaaaaggaaacttttaaat
atgagtgtttcatggattctgggaagttggcctgtggtccttaagcttgc
atgccatactgactaagccatgtccccaggccagctccttactttattga
cagcaactccctcaacagaactggaagagttttgctctacgtaattatct
cttgtgtaaaactcaattaacagtcacagttttgtgtgctatctgcagtg
ttctaagtgtgagagcttgggaaatctcaagagcgtgtgttagtagagtg
acaactcaacatttgcttaagaattataatgcagtcttccttctccactg
ataacagcaaacaccggagtgaaaggaaatctcagcagaaccaaattcat
cagtcaactgagaaagaaatctaacggaaaaaatataaatttatctcagg
caaagaagtgattagaaacacagaacaaggcagataggattgctaagatt
tgggtttgtctctgggattcatgggatgaaggaagggaagagtctacccc
atcagtatttgagagtcacgttttgggtggaggcaatgctgcatccttaa
ctcatttactttgatggccctggaccaggatttgaaagttcaaggaaaga
aaacttttcctttattaacttattaaaatcaggctgtctagaaacctata
atgaggccatacctgttaacacaagctctaacctttttatttattttatt
cgtttaacccaaggcatgcaagtagaggctttgaggaatgtcaagacctt
ttg

gaattccttaatggaagagacttcttaagggattactgattgtgaggcag
ggtgctaactcctttgcatgatcttcttgatgaatacaaaggagatacag
gtaaacaaaatgcccaaaggaactaaatgagatgaacttgttgttaaaaa
ctgggatatgcttcataagaatctctaaagctaacataacatctcaagga
gaaaagatgtgaaaattggaaatctcacggaaaataaaaccaaaccatca
gaactgggtgtaaaaatgagtgacgtccttcagtgaaatataaatcaagc
tgcagggaacatccccagacagaagaagaaaatataagtaagatgggaag
agcactgagaggtgctcatctctgaacatgaatggctggtacacacatgt
attcacagcagcttagccagtcaaagctccatcacaggggacagtgggtt
ctgaggctccacttctacttgagaaggtattgggagttaattgttgtgga
gaaaggccactcttctttatttttttgtttactggtaggtcacagatacc
tcaagagatgactctgcatctgtgaacatgcagggcagcactaatagaac
tcagtgagttggagaaagagggggtgaggtcgtgacctttggaggaagat
gtgcttaggagcatagtgcaaagtgggaaatgaatgcaggactgtatgaa
tatgtctagaagtgttgcatgcatatgtatgaattttcaaaggcttaaaa
aaaatccacagtgaatgaaatgtagctcagactgaaatcgcaaaaggaag
ataaataaagagaaagggtttgttttaggcagactgttaaaggccataag
agccacgagtactgagaataagatgacaccagcaagggtcatctgtgagg
cagtggtgtgacattggggcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_91244465_91245638
seq2: B6Ng01-179H01.b_40_1242 (reverse)

seq1  CAAAA-GTCTTGCC--TCCTCAAGACTTCTAC-TGCATGCCTTGGTTTAA  46
      ||||| |||||| |  |||||||  | ||||| |||||||||||| ||||
seq2  CAAAAGGTCTTGACATTCCTCAAAGCCTCTACTTGCATGCCTTGGGTTAA  50

seq1  A-GGATAAATTAAATAAAAAGTTT--AGCTTGTGTT-ACA-GTATTGCCT  91
      | | ||||| ||||||||||| ||  |||||||||| ||| |||| ||||
seq2  ACGAATAAAATAAATAAAAAGGTTAGAGCTTGTGTTAACAGGTATGGCCT  100

seq1  CACTATAG--TTCTAGACAGCCTGATTTT-ATAAG-TAATAA---GAAAG  134
      || |||||  ||||||||||||||||||| ||||| ||||||    ||||
seq2  CATTATAGGTTTCTAGACAGCCTGATTTTAATAAGTTAATAAAGGAAAAG  150

seq1  TTTTCTTTCC-TGAACTT--CAATCCCTGTCCAGGG-CATC-AAGT-AAT  178
      |||||||||| |||||||   |||||  |||||||| |||| |||| |||
seq2  TTTTCTTTCCTTGAACTTTCAAATCCTGGTCCAGGGCCATCAAAGTAAAT  200

seq1  GAGTT-AGGATGCAGCAT--GCTCCACC--AAACGTGACTCTCAAATACT  223
      ||||| ||||||||||||   |||||||  ||||||||||||||||||||
seq2  GAGTTAAGGATGCAGCATTGCCTCCACCCAAAACGTGACTCTCAAATACT  250

seq1  GAT-GGGTAGACTCTT-CCTTCCTTCATCCCATGAAATCCCAGAGAC-AA  270
      ||| |||||||||||| ||||||||||||||||| |||||||||||| ||
seq2  GATGGGGTAGACTCTTCCCTTCCTTCATCCCATG-AATCCCAGAGACAAA  299

seq1  CCCAAATCTTAGCAATCCTATCTGCCTTGTTCTGTGTTTCTAATCACTTC  320
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAATCTTAGCAATCCTATCTGCCTTGTTCTGTGTTTCTAATCACTTC  349

seq1  TTTGCCTGAGATAAATTTATATTTTTTCCGTTAGATTTCTTTCTCAGTTG  370
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTGAGATAAATTTATATTTTTTCCGTTAGATTTCTTTCTCAGTTG  399

seq1  ACTGATGAATTTGGTTCTGCTGAGATTTCCTTTCACTCCGGTGTTTGCTG  420
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATGAATTTGGTTCTGCTGAGATTTCCTTTCACTCCGGTGTTTGCTG  449

seq1  TTATCAGTGGAGAAGGAAGACTGCATTATAATTCTTAAGCAAATGTTGAG  470
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAGTGGAGAAGGAAGACTGCATTATAATTCTTAAGCAAATGTTGAG  499

seq1  TTGTCACTCTACTAACACACGCTCTTGAGATTTCCCAAGCTCTCACACTT  520
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCACTCTACTAACACACGCTCTTGAGATTTCCCAAGCTCTCACACTT  549

seq1  AGAACACTGCAGATAGCACACAAAACTGTGACTGTTAATTGAGTTTTACA  570
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACACTGCAGATAGCACACAAAACTGTGACTGTTAATTGAGTTTTACA  599

seq1  CAAGAGATAATTACGTAGAGCAAAACTCTTCCAGTTCTGTTGAGGGAGTT  620
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGATAATTACGTAGAGCAAAACTCTTCCAGTTCTGTTGAGGGAGTT  649

seq1  GCTGTCAATAAAGTAAGGAGCTGGCCTGGGGACATGGCTTAGTCAGTATG  670
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCAATAAAGTAAGGAGCTGGCCTGGGGACATGGCTTAGTCAGTATG  699

seq1  GCATGCAAGCTTAAGGACCACAGGCCAACTTCCCAGAATCCATGAAACAC  720
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCAAGCTTAAGGACCACAGGCCAACTTCCCAGAATCCATGAAACAC  749

seq1  TCATATTTAAAAGTTTCCTTTTCCAAATAAACCTTCTCCAATTCAGTTCT  770
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATTTAAAAGTTTCCTTTTCCAAATAAACCTTCTCCAATTCAGTTCT  799

seq1  AGTGTTTCTGTCCTACTGGAATAGGATTCATTATTTCTAAACACACAGCT  820
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTCTGTCCTACTGGAATAGGATTCATTATTTCTAAACACACAGCT  849

seq1  ACAGGGAGTTTGATCTGTTGTGGTATACTCACTAGTACTATGCTAAGAAA  870
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGAGTTTGATCTGTTGTGGTATACTCACTAGTACTATGCTAAGAAA  899

seq1  ACTTCATAGCCTGTGACCTTTATATCCTTAGAATCAAAGACAAAGTAAAT  920
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCATAGCCTGTGACCTTTATATCCTTAGAATCAAAGACAAAGTAAAT  949

seq1  ATCCCAAAATGATTCCATACACCAAATGTGTAATGGGCCATTTAAAACAG  970
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAAAATGATTCCATACACCAAATGTGTAATGGGCCATTTAAAACAG  999

seq1  TGCTAAACAGAAAATGACTGATTTTGACAACACCAAGTGCAACATATGTT  1020
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAACAGAAAATGACTGATTTTGACAACACCAAGTGCAACATATGTT  1049

seq1  TCCTCACATTCTGGTTTGTATTGGACCATTAGTCACAATTTTGAACAATT  1070
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACATTCTGGTTTGTATTGGACCATTAGTCACAATTTTGAACAATT  1099

seq1  CCACAGGAAAAAAAACTTGAACACAAATTTAGAGAAACAATGGATACAAA  1120
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGGAAAAAAAACTTGAACACAAATTTAGAGAAACAATGGATACAAA  1149

seq1  ATATCAAGGCTTAGAAATGTATTTTAGAGGATGACTTTCTTCATAAAAGA  1170
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAAGGCTTAGAAATGTATTTTAGAGGATGACTTTCTTCATAAAAGA  1199

seq1  ATTC  1174
      ||||
seq2  ATTC  1203


seq1: chr17_91120158_91121077
seq2: B6Ng01-179H01.g_65_985

seq1  GAATTCCTTAATGGAAGAGACTTCTTAAGGGATTACTGATTGTGAGGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAATGGAAGAGACTTCTTAAGGGATTACTGATTGTGAGGCAG  50

seq1  GGTGCTAACTCCTTTGCATGATCTTCTTGATGAATACAAAGGAGATACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTAACTCCTTTGCATGATCTTCTTGATGAATACAAAGGAGATACAG  100

seq1  GTAAACAAAATGCCCAAAGGAACTAAATGAGATGAACTTGTTGTTAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACAAAATGCCCAAAGGAACTAAATGAGATGAACTTGTTGTTAAAAA  150

seq1  CTGGGATATGCTTCATAAGAATCTCTAAAGCTAACATAACATCTCAAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATATGCTTCATAAGAATCTCTAAAGCTAACATAACATCTCAAGGA  200

seq1  GAAAAGATGTGAAAATTGGAAATCTCACGGAAAATAAAACCAAACCATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGATGTGAAAATTGGAAATCTCACGGAAAATAAAACCAAACCATCA  250

seq1  GAACTGGGTGTAAAAATGAGTGACGTCCTTCAGTGAAATATAAATCAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGGGTGTAAAAATGAGTGACGTCCTTCAGTGAAATATAAATCAAGC  300

seq1  TGCAGGGAACATCCCCAGACAGAAGAAGAAAATATAAGTAAGATGGGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGGAACATCCCCAGACAGAAGAAGAAAATATAAGTAAGATGGGAAG  350

seq1  AGCACTGAGAGGTGCTCATCTCTGAACATGAATGGCTGGTACACACATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGAGAGGTGCTCATCTCTGAACATGAATGGCTGGTACACACATGT  400

seq1  ATTCACAGCAGCTTAGCCAGTCAAAGCTCCATCACAGGGGACAGTGGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACAGCAGCTTAGCCAGTCAAAGCTCCATCACAGGGGACAGTGGGTT  450

seq1  CTGAGGCTCCACTTCTACTTGAGAAGGTATTGGGAGTTAATTGTTGTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGCTCCACTTCTACTTGAGAAGGTATTGGGAGTTAATTGTTGTGGA  500

seq1  GAAAGGCCACTCTTCTTTATTTTTTTGTTTACTGGTAGGTCACAGATACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGCCACTCTTCTTTATTTTTTTGTTTACTGGTAGGTCACAGATACC  550

seq1  TCAAGAGATGACTCTGCATCTGTGAACATGCAGGGCAGCACTAATAGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAGATGACTCTGCATCTGTGAACATGCAGGGCAGCACTAATAGAAC  600

seq1  TCAGTGAGTTGGAGAAAGAGGGGGTGAGGTCGTGACCTTTGGAGGAAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGAGTTGGAGAAAGAGGGGGTGAGGTCGTGACCTTTGGAGGAAGAT  650

seq1  GTGCTTAGGAGCATAGTGCAAAGTGGGAAATGAATGCAGGACTGTATGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTAGGAGCATAGTGCAAAGTGGGAAATGAATGCAGGACTGTATGAA  700

seq1  TATGTCTAAGAAGTGTTGCATGCATATGTATGAATTTTCAAAGGCTTAAA  750
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCT-AGAAGTGTTGCATGCATATGTATGAATTTTCAAAGGCTTAAA  749

seq1  AAAAATCCAACAGTGAATGAAATGTAGCTCAGACTGAAATCGCAAAAGGA  800
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCC-ACAGTGAATGAAATGTAGCTCAGACTGAAATCGCAAAAGGA  798

seq1  AGAT-AATTAAGAGAAAGGGTTTGTTTTAGGCAGACTGTAAAAGGCCATA  849
      |||| ||| |||||||||||||||||||||||||||||| ||||||||||
seq2  AGATAAATAAAGAGAAAGGGTTTGTTTTAGGCAGACTGTTAAAGGCCATA  848

seq1  AGAGCCACGAG-ACTGAGAATAAGAAGACACCAGCAAGGGTCATCTGTGA  898
      ||||||||||| ||||||||||||| ||||||||||||||||||||||||
seq2  AGAGCCACGAGTACTGAGAATAAGATGACACCAGCAAGGGTCATCTGTGA  898

seq1  GGCAGTGGTGTGACA-TGGGGCC  920
      ||||||||||||||| |||||||
seq2  GGCAGTGGTGTGACATTGGGGCC  921


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