BAC Information

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BAC

Clone NameB6Ng01-179P15
Chromosome17 (Build37)
Map Location 36,833,349 - 36,993,670
singlet/doubletdoublet
Overlap geneLOC667912, LOC100043158, LOC667915, H2-M10.5, H2-M10.6, Trim26
Upstream geneDdr1, LOC100043663, Ier3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10, LOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127, EG667827, LOC435525, LOC677333, LOC100043134, LOC625881, Rpp21, Trim39, H2-M10.2, H2-M10.1, H2-M10.3, Gm318, LOC100043140, LOC674152, LOC383240, LOC224752, H2-M10.4, H2-M11, LOC667896, H2-M9, LOC620340, H2-M1
Downstream geneTrim15, Trim10, LOC100043164, Trim40, Trim31, Ppp1r11, Znrd1, 1700022C21Rik, H2-M6-ps, 2410137M14Rik, H2-M4-ps, D130003B22Rik, Zfp57, Mog, Gabbr1, Olfr90, Olfr91, Olfr92, EG224763, LOC667973, Olfr93, Olfr753-ps1, LOC630355, Ubd, Olfr94, Olfr95, Olfr96, Olfr97, Olfr754-ps1, Olfr98, H2-M3, Olfr755-ps1, Olfr99, Olfr756-ps1, Olfr101, Olfr102, Olfr103, Olfr104, GA_x5J8B7W5KGR-1115818-1115257, Olfr105, Olfr758-ps1, Olfr106, Olfr107, Olfr759-ps1, Olfr108, Olfr760-ps1, Olfr109, H2-M2, Olfr110, Olfr111, Olfr112, Olfr113, Olfr114, Olfr115, Olfr116, Olfr117, Olfr118, Olfr119, Scocp, Olfr120, Olfr1558-ps1, Olfr121, Olfr122, Olfr123, Olfr124, Olfr125, LOC672822, Olfr126
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179P15.bB6Ng01-179P15.g
ACCGA006544GA006545
length1,1681,022
definitionB6Ng01-179P15.b B6Ng01-179P15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,833,349 - 36,834,491)(36,992,665 - 36,993,670)
sequence
gaattcttagagaaggcagtcagcctcatcctgtagctcagacatttatt
gtgaataacattcattctggactaaaaatcactaccatcattttaggagg
aagatgtcatcacccctagtccttctctttctgctggaagtaaccctggc
cttgccttagaagctgacaagtgagtgcaggtcttcagagaaagaacgtc
atgctgaagctgctaggacaatgtacaacaccatcacaggcaagggaagc
ctagccttgaccctagccttgtcagatcctcaaggctctcaaattagcct
attcctgcctggatttctgcatcatccaggcccagacatctctgtcctat
ccaccacccagcctaggtacttctttcaggtcccagcaggagggtgagag
acgaatacatgttggctttagacttctaccaaatatactggtctatttag
gtacctctgaggctggtctcctgcagccctggttcatgttcagtggtaag
aaatgtacattgtgggaaacaacaaaacttaacggtttcccctacactga
ccaccttgtggtgctatacatttggtgctttgctaactttgcacatgttg
cacttcttcaagggtggtttccttatggatttgtggagatctctatgtaa
accacaagcaacctgcctttcctaatccaaactccattctcagataattc
ctcagtaggctgtcgagattctgccaaattgtttccagaccctgcagtcc
agcaaagaaaagaatgtaaataccactacctttggggattggaagtaagg
cttagctcttaaaagatcaagggacctgggttcatttccaagcatcatca
aagagccactcacaacctcccattattccagcttcatgggattagaatgc
tgtcttccagatttgcaaagtcatgtccaactgatttggaatgtaacaca
cacactcactcacacacacacacacacactacgagcataccacagaagtt
aaagcctaaaattaacccattaaaaacatgtggccctttctttcaaacaa
gcttccacatagttggtgatgatagccataacccggccaattgtttgggg
ctaccagccttttatactgcttgcaaaaaaaaaaccaacttcataaaaat
atttcttttaggaaaaaa
gaattctcctgcctttcttttaaccatgtgagggatggctttcccaatcc
agaacttcttccgtgggtacctgaaagagtgatagacacaaacacctgtc
acttggctcttcttgcttttctgccagtgttcatgacaattacaaggcaa
gcagggaaggtctcattatccctaatcaaggaaagaaaaactggcaaagg
cactatgtgaaccaggatataagactgccagaagatttcacaagtgagcg
gactctctgccaagtcaggcttttactctcttgctgtgctcaggtgaagg
ctgtgagcccagttggactctggagatcgtgttgggagacaacaatatct
aatcatcaaagattgacctctttcttgaaagccatgggatgaagcaaggg
ctgctgtgcagttggcaccctacactcctactactacgtggaccatagcc
atacaagtgggagggaagaagaatgatgaagacgagcaagtgaactctta
cttgttggcgaagtccttggtgtcctgcaagggaagaaaacagaggcacc
aaagtgaattaagtaaaactgcatctacacagtcagtaccatgcaacagg
caggcacacacagtgtctacagttagtaccgtattaataggcaggtacac
acagcctacacagttagtaccatattaacaggcaggcacacactgcatct
gtggtcaagactatataacaggcaggcacatacagtctacacagtcagta
ccatattaagaggcaggttacacacttgagtctacacaattagtaccatg
taacagacaggtcacacaaaaacaaacaaagcactcatggctccctccct
tagagaactgacagttctagtggaacattaattaaaataaaaaaacaacg
gggctagagagatggcttcagtggttaagagcactggcctgctctttcca
gaggacctaggtttgaattaacaggcatccacatggcagcttcactaacc
catcttatctattactccggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_36833349_36834491
seq2: B6Ng01-179P15.b_45_1212

seq1  GAATTCTTAGAGAAGGCAGTCAGCCTCATCCTGTAGCTCAGACATTTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGAGAAGGCAGTCAGCCTCATCCTGTAGCTCAGACATTTATT  50

seq1  GTGAATAACATTCATTCTGGACTAAAAATCACTACCATCATTTTAGGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATAACATTCATTCTGGACTAAAAATCACTACCATCATTTTAGGAGG  100

seq1  AAGATGTCATCACCCCTAGTCCTTCTCTTTCTGCTGGAAGTAACCCTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTCATCACCCCTAGTCCTTCTCTTTCTGCTGGAAGTAACCCTGGC  150

seq1  CTTGCCTTAGAAGCTGACAAGTGAGTGCAGGTCTTCAGAGAAAGAACGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTTAGAAGCTGACAAGTGAGTGCAGGTCTTCAGAGAAAGAACGTC  200

seq1  ATGCTGAAGCTGCTAGGACAATGTACAACACCATCACAGGCAAGGGAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGAAGCTGCTAGGACAATGTACAACACCATCACAGGCAAGGGAAGC  250

seq1  CTAGCCTTGACCCTAGCCTTGTCAGATCCTCAAGGCTCTCAAATTAGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCTTGACCCTAGCCTTGTCAGATCCTCAAGGCTCTCAAATTAGCCT  300

seq1  ATTCCTGCCTGGATTTCTGCATCATCCAGGCCCAGACATCTCTGTCCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTGCCTGGATTTCTGCATCATCCAGGCCCAGACATCTCTGTCCTAT  350

seq1  CCACCACCCAGCCTAGGTACTTCTTTCAGGTCCCAGCAGGAGGGTGAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACCCAGCCTAGGTACTTCTTTCAGGTCCCAGCAGGAGGGTGAGAG  400

seq1  ACGAATACATGTTGGCTTTAGACTTCTACCAAATATACTGGTCTATTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAATACATGTTGGCTTTAGACTTCTACCAAATATACTGGTCTATTTAG  450

seq1  GTACCTCTGAGGCTGGTCTCCTGCAGCCCTGGTTCATGTTCAGTGGTAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTCTGAGGCTGGTCTCCTGCAGCCCTGGTTCATGTTCAGTGGTAAG  500

seq1  AAATGTACATTGTGGGAAACAACAAAACTTAACGGTTTCCCCTACACTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTACATTGTGGGAAACAACAAAACTTAACGGTTTCCCCTACACTGA  550

seq1  CCACCTTGTGGTGCTATACATTTGGTGCTTTGCTAACTTTGCACATGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTTGTGGTGCTATACATTTGGTGCTTTGCTAACTTTGCACATGTTG  600

seq1  CACTTCTTCAAGGGTGGTTTCCTTATGGATTTGTGGAGATCTCTATGTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCTTCAAGGGTGGTTTCCTTATGGATTTGTGGAGATCTCTATGTAA  650

seq1  ACCACAAGCAACCTGCCTTTCCTAATCCAAACTCCATTCTCAGATAATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAAGCAACCTGCCTTTCCTAATCCAAACTCCATTCTCAGATAATTC  700

seq1  CTCAGTAGGCTGTCGAGATTCTGCCAAATTG-TTCCAGACCCTGCAGTCC  749
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTCAGTAGGCTGTCGAGATTCTGCCAAATTGTTTCCAGACCCTGCAGTCC  750

seq1  AGCAAAGAAAAGAATGTAAATACCACTACCTT--GGGATTGGAAGTAAGG  797
      ||||||||||||||||||||||||||||||||  ||||||||||||||||
seq2  AGCAAAGAAAAGAATGTAAATACCACTACCTTTGGGGATTGGAAGTAAGG  800

seq1  CTTAGCTCTTAAAAGATCAAGGGACCTGGGTTCATTTCCAAGCATCATCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCTCTTAAAAGATCAAGGGACCTGGGTTCATTTCCAAGCATCATCA  850

seq1  AAGAGCCACTCACAACCTCCCATTATTCCAGCTCCATGGGATTAG-ATGC  896
      ||||||||||||||||||||||||||||||||| ||||||||||| ||||
seq2  AAGAGCCACTCACAACCTCCCATTATTCCAGCTTCATGGGATTAGAATGC  900

seq1  TGTCTTCCAGA-TTGCAAAGTCATGTCCAACTGATTT-GAATGTAACACA  944
      ||||||||||| ||||||||||||||||||||||||| ||||||||||||
seq2  TGTCTTCCAGATTTGCAAAGTCATGTCCAACTGATTTGGAATGTAACACA  950

seq1  CACACACACACACACACACACACACACAC-ACAAGCATA-CACAGAAGTT  992
      ||||| ||| ||||||||||||||||||| || |||||| ||||||||||
seq2  CACACTCACTCACACACACACACACACACTACGAGCATACCACAGAAGTT  1000

seq1  AAAG-CTAAAATTAA-CCAT--AAAACAAGTG--CCCTTCTTCAAAACAA  1036
      |||| |||||||||| ||||  |||||| |||  || |||||  ||||||
seq2  AAAGCCTAAAATTAACCCATTAAAAACATGTGGCCCTTTCTTTCAAACAA  1050

seq1  GCTT-CACATAATT-GTGATGAT-GCCATAACC--GCCAATTGTTT-GTG  1080
      |||| |||||| || |||||||| |||||||||  ||||||||||| | |
seq2  GCTTCCACATAGTTGGTGATGATAGCCATAACCCGGCCAATTGTTTGGGG  1100

seq1  CTACCCAGCTTTTATACTGC-TGCAAAAAAAAA--CAACATGCATAAAAA  1127
      |||||   |||||||||||| ||||||||||||  |||| | ||||||||
seq2  CTACCAGCCTTTTATACTGCTTGCAAAAAAAAAACCAAC-TTCATAAAAA  1149

seq1  TAT---CTTTAGGAAAAAA  1143
      |||    ||||||||||||
seq2  TATTTCTTTTAGGAAAAAA  1168

seq1: chr17_36992665_36993670
seq2: B6Ng01-179P15.g_64_1085 (reverse)

seq1  AACCGGAGTTATAGAT-AGATGG--TAGTG-AGCTGCCATGTGGATGCCT  46
      ||||||||| |||||| ||||||  ||||| |||||||||||||||||||
seq2  AACCGGAGTAATAGATAAGATGGGTTAGTGAAGCTGCCATGTGGATGCCT  50

seq1  GT--AATCAAACCTAGGTCCTCTGG-AAGAGCA-GCCAGTGCTCTTAACC  92
      ||  | ||||||||||||||||||| ||||||| ||||||||||||||||
seq2  GTTAATTCAAACCTAGGTCCTCTGGAAAGAGCAGGCCAGTGCTCTTAACC  100

seq1  ACTG-AGCCATCTCTCTAG-CCCGTTG-TTTTTTATTTTATTTAATGTTC  139
      |||| |||||||||||||| ||||||| |||||||||||| |||||||||
seq2  ACTGAAGCCATCTCTCTAGCCCCGTTGTTTTTTTATTTTAATTAATGTTC  150

seq1  CACTAG-ACTGTCAGTTCTCTAAGGGAGGGAGCCATGAGTGCTTTGTTTG  188
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGAACTGTCAGTTCTCTAAGGGAGGGAGCCATGAGTGCTTTGTTTG  200

seq1  TTTTTGTGTG-CCTGTCTGTTACATGGTACTAATTGTGTAGACTC-AGTG  236
      |||||||||| |||||||||||||||||||||||||||||||||| ||||
seq2  TTTTTGTGTGACCTGTCTGTTACATGGTACTAATTGTGTAGACTCAAGTG  250

seq1  TGT-ACCTGCCTCTT-ATATGGTACTGACTGTGTAGACTGTATGTGCCTG  284
      ||| ||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGTAACCTGCCTCTTAATATGGTACTGACTGTGTAGACTGTATGTGCCTG  300

seq1  CCTGTTATATAGTCTTGACCACAGATGCAGTGTGTGCCTGCCTGTTAATA  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTATATAGTCTTGACCACAGATGCAGTGTGTGCCTGCCTGTTAATA  350

seq1  TGGTACTAACTGTGTAGGCTGTGTGTACCTGCCTATTAATACGGTACTAA  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACTAACTGTGTAGGCTGTGTGTACCTGCCTATTAATACGGTACTAA  400

seq1  CTGTAGACACTGTGTGTGCCTGCCTGTTGCATGGTACTGACTGTGTAGAT  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGACACTGTGTGTGCCTGCCTGTTGCATGGTACTGACTGTGTAGAT  450

seq1  GCAGTTTTACTTAATTCACTTTGGTGCCTCTGTTTTCTTCCCTTGCAGGA  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTTTACTTAATTCACTTTGGTGCCTCTGTTTTCTTCCCTTGCAGGA  500

seq1  CACCAAGGACTTCGCCAACAAGTAAGAGTTCACTTGCTCGTCTTCATCAT  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAGGACTTCGCCAACAAGTAAGAGTTCACTTGCTCGTCTTCATCAT  550

seq1  TCTTCTTCCCTCCCACTTGTATGGCTATGGTCCACGTAGTAGTAGGAGTG  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTCCCTCCCACTTGTATGGCTATGGTCCACGTAGTAGTAGGAGTG  600

seq1  TAGGGTGCCAACTGCACAGCAGCCCTTGCTTCATCCCATGGCTTTCAAGA  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTGCCAACTGCACAGCAGCCCTTGCTTCATCCCATGGCTTTCAAGA  650

seq1  AAGAGGTCAATCTTTGATGATTAGATATTGTTGTCTCCCAACACGATCTC  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGTCAATCTTTGATGATTAGATATTGTTGTCTCCCAACACGATCTC  700

seq1  CAGAGTCCAACTGGGCTCACAGCCTTCACCTGAGCACAGCAAGAGAGTAA  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTCCAACTGGGCTCACAGCCTTCACCTGAGCACAGCAAGAGAGTAA  750

seq1  AAGCCTGACTTGGCAGAGAGTCCGCTCACTTGTGAAATCTTCTGGCAGTC  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGACTTGGCAGAGAGTCCGCTCACTTGTGAAATCTTCTGGCAGTC  800

seq1  TTATATCCTGGTTCACATAGTGCCTTTGCCAGTTTTTCTTTCCTTGATTA  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATCCTGGTTCACATAGTGCCTTTGCCAGTTTTTCTTTCCTTGATTA  850

seq1  GGGATAATGAGACCTTCCCTGCTTGCCTTGTAATTGTCATGAACACTGGC  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATAATGAGACCTTCCCTGCTTGCCTTGTAATTGTCATGAACACTGGC  900

seq1  AGAAAAGCAAGAAGAGCCAAGTGACAGGTGTTTGTGTCTATCACTCTTTC  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGCAAGAAGAGCCAAGTGACAGGTGTTTGTGTCTATCACTCTTTC  950

seq1  AGGTACCCACGGAAGAAGTTCTGGATTGGGAAAGCCATCCCTCACATGGT  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACCCACGGAAGAAGTTCTGGATTGGGAAAGCCATCCCTCACATGGT  1000

seq1  TAAAAGAAAGGCAGGAGAATTC  1006
      ||||||||||||||||||||||
seq2  TAAAAGAAAGGCAGGAGAATTC  1022