BAC Information

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BAC

Clone NameB6Ng01-181K17
Chromosome2 (Build37)17 (Build37)
Map Location 178,476,378 - 178,476,84690,169,369 - 90,170,101
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC626802, LOC329575, LOC433515, LOC665205, OTTMUSG00000016327, LOC100039263, LOC626848, 2810021G02Rik, Phactr3, Sycp2, Ppp1r3d, 9030418K01Rik, Cdh26
Downstream geneLOC100039368, LOC665264, LOC100043168, LOC100039413, Cdh4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181K17.bB6Ng01-181K17.g
ACCGA007769GA007770
length998733
definitionB6Ng01-181K17.b B6Ng01-181K17.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(178,476,378 - 178,476,846)(90,169,369 - 90,170,101)
sequence
gaattctttttttttccttagagtgatttaatgccacagaaagcatttaa
gtaattgttaagttgtctcactttctttctttttttttcccaattttctt
ttattaggtattttcctcgtttactttgtcaatgctatcccaaaagtccc
ccatacccaccctccccaatcccctacctacccactccccctttttggcc
ctggtgttcccctgtactggagcatataaagtttgcaagtccaaagggcc
tctctttccagtgatgcctgactaggccatcttttgatacatatgcagct
agagacaagagctccggggtactggttagttcatattgttgttccacata
taggattgcagttccctttagatccttgggtactttctctagctcctcca
ttgggggccgtgtgaaccatccaatagctgactgtgagcatccacttctg
tgtttgctaggcccagcatagtctcacaagagacagatatatctgggtcc
ttacagcaaaatcttgctagtgtatgcaatggtgtcagcgtttggaaact
gattatgggatggatccctggatatggcaatcactagatggtccaccctt
tcttcacagctccaaattttgtctctgtaactccttcaatgggtgttttg
ttcccatttctaggaaggggcaaagtatccacactttagtcttcgttctt
cttgagtttcatgcatttagcaaattgtatcttatatcttgtgtatccta
agtttctggcctaatatccacttatcagtgagtacatattgtgtgagttc
ctttgtgtttgggttacctcactcaggattatgccctccaggtccatcca
tttgcctaggaatttcaaaaattcattctttttaatagctgagtagtact
ccattgtgtaaatgtaccacattttctgtatccattcctctgttgaggga
catctgggttctttccagcttctggctattataaataagctgctatga
gaattcagctcaaagagattttctaacaaagctggttagttggtgggaat
ttggccttcctgatggttaccctgcatactctctactacactcagagcca
gctcaaagtggtgaaggcaaatttttctaaagtttccagtacaccatttc
aaaatctttattcattcttatttctgaaggtgttcatgtcactttagtga
tattgtaaaaatcttgaaaacataaatagatgaacacagttcagagataa
ggacattgcctgaagcagaaaatgtctacacacactggataacattatat
gaagagtgcaactcaatttcttgctaggtcagtttctaattataatggag
atattttattatatctttgatttttttcaatacatttagaggcccctata
ttacgtggatatgccatcattatttttatgatcttacttttatcagataa
ttatagcctactagtcatttgcagcataaaacatcataatggccttgtaa
aacatatctattttagtctgaaaggtaagcatttctagcaatagaagaaa
aagtaactggtgcatactattagatgttttactaaagtatttaaaaaatc
aactcaaactccattggttgcttagaaagtacctaatattttatttacta
tttgacattttaataaacttgacactttcctttcatttgctttttctttg
gatttagtacttttattttaaaatttagaagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_178476378_178476846
seq2: B6Ng01-181K17.b_123_563

seq1  TTCTTTTTTTTTCCCCATATTGCAGATTTTATTTTATTTTTTGTATTTTT  50
      |||||||||||||||               ||||| ||||          
seq2  TTCTTTTTTTTTCCC--------------AATTTTCTTTT----------  26

seq1  TTAAATTAGGTATTTTCCTCGTTTACATTTCCAATGCTATCCCAAAAGTC  100
          |||||||||||||||||||||| ||  |||||||||||||||||||
seq2  ----ATTAGGTATTTTCCTCGTTTACTTTGTCAATGCTATCCCAAAAGTC  72

seq1  CCCCATACCCACCC-CCCCAATCCCCTACCAACCCACTCCCCCTTTTTGG  149
      |||||||||||||| ||||||||||||||| |||||||||||||||||||
seq2  CCCCATACCCACCCTCCCCAATCCCCTACCTACCCACTCCCCCTTTTTGG  122

seq1  CCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAAAGGG  199
      |||||| ||||||||||||||| |||||||||||||||||||||||||||
seq2  CCCTGGTGTTCCCCTGTACTGGAGCATATAAAGTTTGCAAGTCCAAAGGG  172

seq1  CCTCTCTTTCCAGTGATGGCTGACTAGGCCATCTTTTGATACATATGCAG  249
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CCTCTCTTTCCAGTGATGCCTGACTAGGCCATCTTTTGATACATATGCAG  222

seq1  CTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTGTTCCACC  299
      |||||| |||||||||||||||||||||||||||||| ||||||||||| 
seq2  CTAGAGACAAGAGCTCCGGGGTACTGGTTAGTTCATATTGTTGTTCCACA  272

seq1  TATAGGGTTGCAGTTCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTC  349
      |||||| |||||||||||||||| ||||||||||||||||||||||||||
seq2  TATAGGATTGCAGTTCCCTTTAGATCCTTGGGTACTTTCTCTAGCTCCTC  322

seq1  CATTGGGGGCCGTGTGATCCATCCAATAGCTGACTGTGAGCATCCACTTC  399
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CATTGGGGGCCGTGTGAACCATCCAATAGCTGACTGTGAGCATCCACTTC  372

seq1  TGTGTTTGCCAGGCCCCGGCATAGTCTCACAAGAGACAGCTCTATCTGGG  449
      ||||||||| ||| ||| ||||||||||||||||||||| | ||||||||
seq2  TGTGTTTGCTAGG-CCCAGCATAGTCTCACAAGAGACAGATATATCTGGG  421

seq1  TCCTTACAGCAAAATCTTGC  469
      ||||||||||||||||||||
seq2  TCCTTACAGCAAAATCTTGC  441

seq1: chr17_90169369_90170101
seq2: B6Ng01-181K17.g_67_799

seq1  GAATTCAGCTCAAAGAGATTTTCTAACAAAGCTGGTTAGTTGGTGGGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTCAAAGAGATTTTCTAACAAAGCTGGTTAGTTGGTGGGAAT  50

seq1  TTGGCCTTCCTGATGGTTACCCTGCATACTCTCTACTACACTCAGAGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCTTCCTGATGGTTACCCTGCATACTCTCTACTACACTCAGAGCCA  100

seq1  GCTCAAAGTGGTGAAGGCAAATTTTTCTAAAGTTTCCAGTACACCATTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAAGTGGTGAAGGCAAATTTTTCTAAAGTTTCCAGTACACCATTTC  150

seq1  AAAATCTTTATTCATTCTTATTTCTGAAGGTGTTCATGTCACTTTAGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTTTATTCATTCTTATTTCTGAAGGTGTTCATGTCACTTTAGTGA  200

seq1  TATTGTAAAAATCTTGAAAACATAAATAGATGAACACAGTTCAGAGATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTAAAAATCTTGAAAACATAAATAGATGAACACAGTTCAGAGATAA  250

seq1  GGACATTGCCTGAAGCAGAAAATGTCTACACACACTGGATAACATTATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATTGCCTGAAGCAGAAAATGTCTACACACACTGGATAACATTATAT  300

seq1  GAAGAGTGCAACTCAATTTCTTGCTAGGTCAGTTTCTAATTATAATGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTGCAACTCAATTTCTTGCTAGGTCAGTTTCTAATTATAATGGAG  350

seq1  ATATTTTATTATATCTTTGATTTTTTTCAATACATTTAGAGGCCCCTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTATTATATCTTTGATTTTTTTCAATACATTTAGAGGCCCCTATA  400

seq1  TTACGTGGATATGCCATCATTATTTTTATGATCTTACTTTTATCAGATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGTGGATATGCCATCATTATTTTTATGATCTTACTTTTATCAGATAA  450

seq1  TTATAGCCTACTAGTCATTTGCAGCATAAAACATCATAATGGCCTTGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGCCTACTAGTCATTTGCAGCATAAAACATCATAATGGCCTTGTAA  500

seq1  AACATATCTATTTTAGTCTGAAAGGTAAGCATTTCTAGCAATAGAAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATCTATTTTAGTCTGAAAGGTAAGCATTTCTAGCAATAGAAGAAA  550

seq1  AAGTAACTGGTGCATACTATTAGATGTTTTACTAAAGTATTTAAAAAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAACTGGTGCATACTATTAGATGTTTTACTAAAGTATTTAAAAAATC  600

seq1  AACTCAAACTCCATTGGTTGCTTAGAAAGTACCTAATATTTTATTTACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAAACTCCATTGGTTGCTTAGAAAGTACCTAATATTTTATTTACTA  650

seq1  TTTGACAATTTAATAAACATGACACTTTCCTTTCATTTGC-TTTTCTTTG  699
      ||||||| |||||||||| ||||||||||||||||||||| |||||||||
seq2  TTTGACATTTTAATAAACTTGACACTTTCCTTTCATTTGCTTTTTCTTTG  700

seq1  GATTTAGTACTTTTATTTTAAAATTTAGGAAGTC  733
      ||||||||||||||||||||||||||| ||||||
seq2  GATTTAGTACTTTTATTTTAAAATTTA-GAAGTC  733