BAC Information

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BAC

Clone NameB6Ng01-181N13
Chromosome17 (Build37)
Map Location 29,952,772 - 29,953,861
singlet/doubletsinglet
Overlap genenone
Upstream geneBrpf3, Pnpla1, 4930539E08Rik, Pxt1, Kctd20, Stk38, Sfrs3, LOC100042815, Cdkn1a, 9830134C10Rik, LOC100043341, Cpne5, Ppil1, BC004004, LOC100043348, Pi16, Mtch1, Fgd2, Pim1, 4933413N12Rik, Tbc1d22b, Rnf8, 1300018I05Rik
Downstream geneMdga1, LOC100042885, LOC100042888, Zfand3, Btbd9, EG623169, Glo1, LOC666942, 1700097N02Rik, Dnahc8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181N13.bB6Ng01-181N13.g
ACCGA007896GA007897
length1,1161,097
definitionB6Ng01-181N13.b B6Ng01-181N13.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccttaattcaaatcactctcccacctcagcctcccacagatctag
gagaatttgtgcataccactttaccaggccctttgagtggtctttcccaa
aagcttctgtccttctgcattttgggcagatgcctctctgggactaaaca
gcccttctgcatccagatcctgagactgcatcatgtttcttctctgttgg
aatacttctttgaagtataaaaatttccatcttgatttgttccctccttt
tggtatattttccatagatatttgaggtacatgatatagaagacacgtac
ctcaagaacttgtgtatttgaaaatgcctttatttgacccctggttgata
gttttgctgggtataaaactctactttggaaactgtttcaaactctagaa
tttgatctattgtcttcaggtttacacttttaagacttaaacaattctga
gtctgttttgattctctttttttttttctttgtaaataacctattttgac
tttgtgaaagcttttagacttcttttatcattgttattacatttatttgt
gttcatgtgcatatgaatgaatgcatgtcatattgtatgtgaaggtcaga
ggacagtttgtgggagtcagctctttccaaccactatgtgggtcctggga
tccagacttaggtcgtttgggtttggcaacaagtacctttgcccattgag
ccaacttcttaaccctcttttaaattttttatcttttcaatttcacattg
tagagcgttgtaaaagcactttccctggtccttgttttggttgatttgaa
ggatgactttttagagctaggaaattttcttgttttttgtttgtttgttt
ttgttttctgattatttttcatctccatagttccttccttccttcttctc
ttttctgcccttctctcttcttcaatagttctatttcttctttctttttc
tcctcctcctttcttctcttcagcctctctctctctttccttcctctccg
tttcttctccctcttagaccaagaaatcttaactctgtaatgcaggctag
cttcatactttcctttagctttagactcctgtattataataccttgtatt
gccaacctcttctggc
gaattctctcaccttctagctgtagatcttggacgtggctctttaattct
tagagtcttggttccctcatttgcatatttgtcagaaatgtagaaagcca
cactatgtactgatacccagacagcattgcatttttatgacactgtctgg
cacagagtaggtgctcattcttcaaacttgtctagccgggcggtggtggt
gcacgcctttaatcccagcacttgggaggcagaggcaggcagatttctga
gtttgaggccagcctggtctacaaagtgagttccaggacagccagggcta
tacagagaaaccctgtcttgaaaaaaaaaaaaaaaaaaaagaaatcctaa
ctagaacaaacagatccaaaaggtaaaacaacagagccaaacagaaccca
aaataactcctcatcctagctgcctggaagccagtattctgctagcagcc
ttcacatggagatgtagaactctcaggtcctcgtacaccatgcctgcctg
gatgctgctatgttcccaccttgatgaaaatggactgaacctctgaacct
gtaagccagctccaatgaaatgtccttataagagttgccttggtcatggt
gtctgttcacagcagtaaacccaaactaagacaaagctcattcttctcat
ttatccttgtggtgtaccagcccaacttccaactaagcgttcttcagtgc
attgagaacctgctgtttggagacactgcctcctctagaaagcctgccac
caccattattcattgcttttacattgctataaccaaggggccttaaagaa
aggtctggcttgggctggagagttggctctgcggttaagagcacttgttg
ttcttacaaaggatcaaggttctattcccagccgggcagtggtggcagca
ttcgggaggcagaaggcaggtggatttctgtagttcgaaggccagcctgg
tctaaagagtggagttcccagggacagccaggcctacccagagaaacctc
tgttctcaaaaatcaaatcaaaaacaaaaggaaaggttctattcccagca
tcccacatgatggggcttcaccacttccatagcccaatgcatgcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_29952772_29953861
seq2: B6Ng01-181N13.g_69_1165

seq1  GAATTCTCTCACCTTCTAGCTGTAGATCTTGGACGTGGCTCTTTAATTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCACCTTCTAGCTGTAGATCTTGGACGTGGCTCTTTAATTCT  50

seq1  TAGAGTCTTGGTTCCCTCATTTGCATATTTGTCAGAAATGTAGAAAGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTCTTGGTTCCCTCATTTGCATATTTGTCAGAAATGTAGAAAGCCA  100

seq1  CACTATGTACTGATACCCAGACAGCATTGCATTTTTATGACACTGTCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATGTACTGATACCCAGACAGCATTGCATTTTTATGACACTGTCTGG  150

seq1  CACAGAGTAGGTGCTCATTCTTCAAACTTGTCTAGCCGGGCGGTGGTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGTAGGTGCTCATTCTTCAAACTTGTCTAGCCGGGCGGTGGTGGT  200

seq1  GCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGA  250

seq1  GTTTGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTA  300

seq1  TACAGAGAAACCCTGTCTTGAAAAAAAAAAAAAAAAAAAAGAAATCCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGAAACCCTGTCTTGAAAAAAAAAAAAAAAAAAAAGAAATCCTAA  350

seq1  CTAGAACAAACAGATCCAAAAGGTAAAACAACAGAGCCAAACAGAACCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAACAAACAGATCCAAAAGGTAAAACAACAGAGCCAAACAGAACCCA  400

seq1  AAATAACTCCTCATCCTAGCTGCCTGGAAGCCAGTATTCTGCTAGCAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACTCCTCATCCTAGCTGCCTGGAAGCCAGTATTCTGCTAGCAGCC  450

seq1  TTCACATGGAGATGTAGAACTCTCAGGTCCTCGTACACCATGCCTGCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATGGAGATGTAGAACTCTCAGGTCCTCGTACACCATGCCTGCCTG  500

seq1  GATGCTGCTATGTTCCCACCTTGATGAAAATGGACTGAACCTCTGAACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTGCTATGTTCCCACCTTGATGAAAATGGACTGAACCTCTGAACCT  550

seq1  GTAAGCCAGCTCCAATGAAATGTCCTTATAAGAGTTGCCTTGGTCATGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCCAGCTCCAATGAAATGTCCTTATAAGAGTTGCCTTGGTCATGGT  600

seq1  GTCTGTTCACAGCAGTAAACCCAAACTAAGACAAAGCTCATTCTTCTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTTCACAGCAGTAAACCCAAACTAAGACAAAGCTCATTCTTCTCAT  650

seq1  TTATCCTTGTGGTGTACCAGCCCAACTTCCAACTAAGCGTTCTTCAGTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCTTGTGGTGTACCAGCCCAACTTCCAACTAAGCGTTCTTCAGTGC  700

seq1  ATTGAGAACCTGCTGTTTGGAGACACTGCCTCCTCTAGAAAGCCTGCCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGAACCTGCTGTTTGGAGACACTGCCTCCTCTAGAAAGCCTGCCAC  750

seq1  CACCATTATTCATTGCTTTTACATTGCTATAACCAAGGGGCCTTAAAG-A  799
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CACCATTATTCATTGCTTTTACATTGCTATAACCAAGGGGCCTTAAAGAA  800

seq1  AGGTCTGGCTTGGGCTGGAGAGTTGGCTCTGCGGTTAAGAGCACTTGTTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTGGCTTGGGCTGGAGAGTTGGCTCTGCGGTTAAGAGCACTTGTTG  850

seq1  TTCTTACAAAGGATCAAGGTTCTATTCCCAGCCGGGCAGTGGTGGCAGCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTACAAAGGATCAAGGTTCTATTCCCAGCCGGGCAGTGGTGGCAGCA  900

seq1  TTCGGGAGGCAG-AGGCAGGTGGATTTCTG-AGTTCG-AGGCCAGCCTGG  946
      |||||||||||| ||||||||||||||||| |||||| ||||||||||||
seq2  TTCGGGAGGCAGAAGGCAGGTGGATTTCTGTAGTTCGAAGGCCAGCCTGG  950

seq1  TCTACAGAGT-GAGTTCC--AGGACAGCCAGGGCTACACAGAGAAACC-C  992
      |||| ||||| |||||||   ||||||||||| |||| |||||||||| |
seq2  TCTAAAGAGTGGAGTTCCCAGGGACAGCCAGGCCTACCCAGAGAAACCTC  1000

seq1  TG-TCTCAAAAAAACAAAACAAAAACAAAAAGAAAAGGTTCTATTCCCAG  1041
      || |||| ||||| |||| ||||||| ||||| |||||||||||||||||
seq2  TGTTCTC-AAAAATCAAATCAAAAAC-AAAAGGAAAGGTTCTATTCCCAG  1048

seq1  CA-CCCACATGATGGGGGCTCACCACTTCCTTAGGCCCCAGGCATGCATG  1090
      || ||||||||||||||  ||||||||||| || |||| | |||||||||
seq2  CATCCCACATGATGGGGCTTCACCACTTCCATA-GCCCAATGCATGCATG  1097