BAC Information

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BAC

Clone NameB6Ng01-182E02
Chromosome10 (Build37)17 (Build37)
Map Location 65,669,660 - 65,670,08236,693,937 - 36,694,981
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC665206, LOC216036, 1700023F02Rik, 4930407I19Rik
Downstream geneReep3, Jmjd1c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-182E02.bB6Ng01-182E02.g
ACCGA008200GA008201
length1,1421,051
definitionB6Ng01-182E02.b B6Ng01-182E02.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(65,669,660 - 65,670,082)(36,693,937 - 36,694,981)
sequence
gaattctttgttcagctctgagccccattttttaatggggttatttgatt
ttctggagtccaccttgttgagttctttatacatattggatattagtccg
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttactgatgatgtcttttgccttgcagaagctttgcaacttta
tgagttcccatttattgattctcgattttacagcacaagctattgctgtt
ctattcaggaatttttcccctgtacccatatcttcaaggcttttccctat
tttctcccctataattttcagtgtctctggttttatgtggagttccttaa
tccacttagatttgaccttagtacaatgagataggaatggatcaattcac
attcttctacatgataactgccagttgtgccagcaccctttgttgaaaat
gctgtcttttttcccactggatggttttagctcccttgtaaaagatcaag
tgaccataggtgtgtgggttcatttctgggtcttcaattctattccattg
gtctacttgtctgtcgctataccagtaccatgcagtttttatcacaattg
ctctgtagtacagcttgaggtcaggcatggtgattccaccagaggttctt
ttatccttgagaagagtttttgctatcctaggtttttttgttatttcaga
tgaatctgccgattgccctttctaattcgttgaagaattgagttggaatt
ttgatggggattgcattgaatctgtagattgcttttggcaagatagccat
ttttactatattgatcctgccaatccatgagcatggtagatctttccatc
ttctgagatcttctttaatttctttcttcagcaactgaagttcttatcat
acatatctttcacttccttagttagagtcaagccaaaggtatttttatat
tattgtgactattgagaagggtgttgtttccctaattctttctcagcctg
ttatcctttgtggtacagaaagggcattaactttgtttgagttattttat
atctcagcttactttcattggaagctgttttataggctaatggagttctt
ctgtgtggattttttagggtctcatcatatttacttatcata

gaattcttaggcatcaatggccctgattatattgtagtgaatttaaacca
aaggacttggactacagtttgcaggacagttgagaggctcagacaactgt
gggatggtttatactatggacaagatgtgaagacttacctggagtttgag
aagtcactcatctcacaactgggctatggaaagaaaattttgtttagtag
aggtgaggacagaaaattccccatgtgcattaaaattggagctcctgtcc
tctgaggattattcccagagggctaagcctttactcagcacaattcagtc
tgtcaattaaacagcaattccttccatttactttgtgaaccatgacctct
ttcaaacctgttcagtatccatatactgtatatggaatttcttataataa
ctcacagtctgtagtacaactaacccaaaagatctgaatggaaagtccaa
ttatctagtagatgctaagtcccatatggctagatgtttcagatggtatt
ctgtaaaatctggaatcctgaagaaataaattccaacagctgtgctggca
agtaagtgcaaggagatgaagagtgagtcttccttcttccattgacctta
cgcaagtgcccagatgaaggtatggatcagattaaatgtgtgtaccacca
tgccagttttggaacttgctttgtcccagcattgaactcaaaaatatgat
tgcctcagtctcctgggactaaaggcatttactaccttgcctgtactcaa
acttttcatggccactatgcttcaagatctggatcaaagttgtgcccttc
atttctagattgtatttcattccagaaatagtcaagtttacaaccagaaa
gagccatcataccaggtccacccgggatttcaccttgtctttgttcactc
tgggcatcttgctatctcctcattcctaatgtttcaatattcccgttcct
ctagttcatggtgggttggggagactattaatgactgcttctatttcttt
aaggggaaattgggactgttagatcattaaatctggatcctgaatttaac
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_65669660_65670082
seq2: B6Ng01-182E02.b_667_1183 (reverse)

seq1  TATGATAAGTAAATATGTATTTTATTCCTCTAATA---------AAGTA-  40
      ||||||||||||||||| ||   |  |||  || |         ||| | 
seq2  TATGATAAGTAAATATG-ATGAGA-CCCTAAAAAATCCACACAGAAGAAC  48

seq1  TCCCATAGTTT--------GTTTTC-TTGATTTTTAGGGTGAGATGGCAT  81
      |||  |||  |        | || |  |||    || | ||||||   | 
seq2  TCCATTAGCCTATAAAACAGCTTCCAATGA-AAGTAAGCTGAGATATAAA  97

seq1  GGAGTTGGAATTTTGTT-GTGGTGTTACATAAGCACATTCAAGGATA---  127
        |  |  ||    |||  ||   || |   | ||||   |||||||   
seq2  ATAACTCAAACAAAGTTAATGCCCTTTCTGTACCACA---AAGGATAACA  144

seq1  -----------------------------CTTGTC-TTAG----------  137
                                   ||| ||  |||          
seq2  GGCTGAGAAAGAATTAGGGAAACAACACCCTTCTCAATAGTCACAATAAT  194

seq1  -------TAACTTTGACCTGGTACT------GGA---GAA-------TAT  164
             || ||||| | ||   ||      |||   |||       |||
seq2  ATAAAAATACCTTTGGCTTGACTCTAACTAAGGAAGTGAAAGATATGTAT  244

seq1  CATGAGA---TAGGATGCTTATAAGCAACAGAAATT---TATCATCTC--  206
       || |||   |  | ||||   |||  | |||||||    |  |||||  
seq2  GATAAGAACTTCAGTTGCT--GAAG--AAAGAAATTAAAGAAGATCTCAG  290

seq1  -----CCAAAGCTCT-CCAGGCT--GGGAATTCCACTGTC--------AA  240
             |||| ||| ||| |||   ||| |  ||   ||        ||
seq2  AAGATGGAAAGATCTACCATGCTCATGGATTGGCAGGATCAATATAGTAA  340

seq1  GAATGGGGTGCCTTTATCTTGCCAAAAGCAATCTACAGATTCAATGCAAT  290
       |||||        ||||||||||||||||||||||||||||||||||||
seq2  AAATGG-------CTATCTTGCCAAAAGCAATCTACAGATTCAATGCAAT  383

seq1  CCCCATCAAAATTCCAACTCAATTCTTCAACGAATTAGAAGGAGCAATTT  340
      |||||||||||||||||||||||||||||||||||||||| | |||||  
seq2  CCCCATCAAAATTCCAACTCAATTCTTCAACGAATTAGAAAGGGCAATCG  433

seq1  GCAAATTCATCTGGAATAAC-AAAAAACCTAGGATAGCAAAAACTCTTCT  389
      ||| ||||||||| |||||| |||||||||||||||||||||||||||||
seq2  GCAGATTCATCTGAAATAACAAAAAAACCTAGGATAGCAAAAACTCTTCT  483

seq1  CAAGGATAAAAGAACCTCTGGTGGAATCATCATG  423
      ||||||||||||||||||||||||||||| ||||
seq2  CAAGGATAAAAGAACCTCTGGTGGAATCACCATG  517


seq1: chr17_36693937_36694981
seq2: B6Ng01-182E02.g_62_1112 (reverse)

seq1  AGTTAAA-TCAGGAT-CAGA-TTAATGATCTTAACAGTCCC-ATTTCCCC  46
      ||||||| ||||||| |||| ||||||||| |||||||||| ||||||||
seq2  AGTTAAATTCAGGATCCAGATTTAATGATC-TAACAGTCCCAATTTCCCC  49

seq1  -TAAAGAAATAGAAGCAGTCATTAATAGTCTCCC--AACCAACATGAACT  93
       |||||||||||||||||||||||||||||||||  | ||| ||||||||
seq2  TTAAAGAAATAGAAGCAGTCATTAATAGTCTCCCCAACCCACCATGAACT  99

seq1  AGAGGAACGGGAATATTGAAACATTAGGAATGAGGAGATAGCAAGATG-C  142
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AGAGGAACGGGAATATTGAAACATTAGGAATGAGGAGATAGCAAGATGCC  149

seq1  CAGAGGTGAACAAAGACAAGGTGAAATCCCGGGTGGACCTGGTATGATGG  192
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGA-GTGAACAAAGACAAGGTGAAATCCCGGGTGGACCTGGTATGATGG  198

seq1  CTCTTTCTGGTTGTAAACTTGACTATTTCTGGAATGAAATACAATCTAGA  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCTGGTTGTAAACTTGACTATTTCTGGAATGAAATACAATCTAGA  248

seq1  AATGAAGGGCACAACTTTGATCCAGATCTTGAAGCATAGTGGCCATGAAA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGGGCACAACTTTGATCCAGATCTTGAAGCATAGTGGCCATGAAA  298

seq1  AGTTTGAGTACAGGCAAGGTAGTAAATGCCTTTAGTCCCAGGAGACTGAG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGAGTACAGGCAAGGTAGTAAATGCCTTTAGTCCCAGGAGACTGAG  348

seq1  GCAATCATATTTTTGAGTTCAATGCTGGGACAAAGCAAGTTCCAAAACTG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCATATTTTTGAGTTCAATGCTGGGACAAAGCAAGTTCCAAAACTG  398

seq1  GCATGGTGGTACACACATTTAATCTGATCCATACCTTCATCTGGGCACTT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGTGGTACACACATTTAATCTGATCCATACCTTCATCTGGGCACTT  448

seq1  GCGTAAGGTCAATGGAAGAAGGAAGACTCACTCTTCATCTCCTTGCACTT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTAAGGTCAATGGAAGAAGGAAGACTCACTCTTCATCTCCTTGCACTT  498

seq1  ACTTGCCAGCACAGCTGTTGGAATTTATTTCTTCAGGATTCCAGATTTTA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCCAGCACAGCTGTTGGAATTTATTTCTTCAGGATTCCAGATTTTA  548

seq1  CAGAATACCATCTGAAACATCTAGCCATATGGGACTTAGCATCTACTAGA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATACCATCTGAAACATCTAGCCATATGGGACTTAGCATCTACTAGA  598

seq1  TAATTGGACTTTCCATTCAGATCTTTTGGGTTAGTTGTACTACAGACTGT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGGACTTTCCATTCAGATCTTTTGGGTTAGTTGTACTACAGACTGT  648

seq1  GAGTTATTATAAGAAATTCCATATACAGTATATGGATACTGAACAGGTTT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTATTATAAGAAATTCCATATACAGTATATGGATACTGAACAGGTTT  698

seq1  GAAAGAGGTCATGGTTCACAAAGTAAATGGAAGGAATTGCTGTTTAATTG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGGTCATGGTTCACAAAGTAAATGGAAGGAATTGCTGTTTAATTG  748

seq1  ACAGACTGAATTGTGCTGAGTAAAGGCTTAGCCCTCTGGGAATAATCCTC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACTGAATTGTGCTGAGTAAAGGCTTAGCCCTCTGGGAATAATCCTC  798

seq1  AGAGGACAGGAGCTCCAATTTTAATGCACATGGGGAATTTTCTGTCCTCA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGACAGGAGCTCCAATTTTAATGCACATGGGGAATTTTCTGTCCTCA  848

seq1  CCTCTACTAAACAAAATTTTCTTTCCATAGCCCAGTTGTGAGATGAGTGA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTACTAAACAAAATTTTCTTTCCATAGCCCAGTTGTGAGATGAGTGA  898

seq1  CTTCTCAAACTCCAGGTAAGTCTTCACATCTTGTCCATAGTATAAACCAT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCAAACTCCAGGTAAGTCTTCACATCTTGTCCATAGTATAAACCAT  948

seq1  CCCACAGTTGTCTGAGCCTCTCAACTGTCCTGCAAACTGTAGTCCAAGTC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAGTTGTCTGAGCCTCTCAACTGTCCTGCAAACTGTAGTCCAAGTC  998

seq1  CTTTGGTTTAAATTCACTACAATATAATCAGGGCCATTGATGCCTAAGAA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGTTTAAATTCACTACAATATAATCAGGGCCATTGATGCCTAAGAA  1048

seq1  TTC  1045
      |||
seq2  TTC  1051


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