BAC Information

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BAC

Clone NameB6Ng01-182O10
Chromosome17 (Build37)
Map Location 58,225,975 - 58,226,928
singlet/doubletsinglet
Overlap geneCntnap5c
Upstream geneTubb4, Tnfsf9, Cd70, Tnfsf14, C3, Gpr108, Trip10, LOC668635, Vav1, Emr1, EG224916, LOC674419
Downstream geneLOC620408, EG545216, LOC668648, 2610034M16Rik, Nudt12, 4930505H01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-182O10.bB6Ng01-182O10.g
ACCGA008666GA008667
length1,205959
definitionB6Ng01-182O10.b B6Ng01-182O10.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttctatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaacgttggagtttca
ttaggtcccatttgtcaattcttgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcaattagc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgttaaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagtagagtttttgctatcctaggttttttgttattccagatg
aattttcaaattgctccttctaattcgttgaagaattgtgttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagacttgaagtttttaccata
cagatcttttcactcctttagttagagtcacgccgagatatttttaatat
taatttgtgactattgagaaagggtgtttgtttccctagtttctttctca
gcctgtttatctttgttgtagaagaaagggtcaattgacttgttggagtt
aatttttatatcagcctacttcacgaatgctgtttaatcaggttagaagt
tccctgggtgaattttaaggtcactattatactattcatatctctcgcaa
atgattttgttgcttcccttttccaatttgggatcaccctgtgatcttat
cgatc
gaattcaagataacaatatggaggagtctattctttgaaactatgggtca
tatcacaagatcgcagaggatttttttgtcaacaagggaaggcagactac
tgagaatgtgaatcagaaaagatcaggtgtttctcctgcagagtacccaa
gttcagttccatgcacctacattaggcagcccaaaacgacattgtaacta
gagcacttttgattgtgggtatggaactcacatgcctaaacacacacagg
aacacacacatgcacatacactatatatacatgcatgtacacataattat
aaataaacataaacaccttaaaacaggaggtttggtgtgtttagctcgtt
ctgtgtgcagcaaattctgcccttttttgctatgttgtaacccattcaat
gggttgtgaacaaagggcaaacatttcagtaaagctgattttggatttcc
aaccttgaaatggacaaactacacaacccccccccatagtaaaatactca
atctcagagaatatgattttatccttgtaaacttatgtctttttgagatc
ataataaaataaaattatttcccctttgcttttcctgtctctgaactcta
ccatagcttctcttttttcaaattcatattccacttaattttttttgtgt
atacacacacacacacacacacacaaacacacacacacacacacacacac
acacacacacgtttacaacctgttcattctctataatgttatttgtattt
acgttttcaagggtgatcatttggtattggacaaccaattaattgataag
ctcctccttggggaagacttttctccaagtttcagcattctccagttgcc
ttaacttctttgtatagagttgatgcctcttgggctttctcctgtctacc
ttagtatgattatcggttatactcagctcatgtttggagcagttatttca
gttgacaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_58225975_58226928
seq2: B6Ng01-182O10.g_67_1023

seq1  GAATTCAAGATAACAATATGGAGGAGTCTATTCTTTGAAACTATGGGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGATAACAATATGGAGGAGTCTATTCTTTGAAACTATGGGTCA  50

seq1  TATCACAAGATCGCAGAGGATTTTTTTGTCAACAAGGGAAGGCAGACTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACAAGATCGCAGAGGATTTTTTTGTCAACAAGGGAAGGCAGACTAC  100

seq1  TGAGAATGTGAATCAGAAAAGATCAGGTGTTTCTCCTGCAGAGTACCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATGTGAATCAGAAAAGATCAGGTGTTTCTCCTGCAGAGTACCCAA  150

seq1  GTTCAGTTCCATGCACCTACATTAGGCAGCCCAAAACGACATTGTAACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGTTCCATGCACCTACATTAGGCAGCCCAAAACGACATTGTAACTA  200

seq1  GAGCACTTTTGATTGTGGGTATGGAACTCACATGCCTAAACACACACAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACTTTTGATTGTGGGTATGGAACTCACATGCCTAAACACACACAGG  250

seq1  AACACACACATGCACATACACTATATATACATGCATGTACACATAATTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACACATGCACATACACTATATATACATGCATGTACACATAATTAT  300

seq1  AAATAAACATAAACACCTTAAAACAGGAGGTTTGGTGTGTTTAGCTCGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAACATAAACACCTTAAAACAGGAGGTTTGGTGTGTTTAGCTCGTT  350

seq1  CTGTGTGCAGCAAATTCTGCCCTTTTTTGCTATGTTGTAACCCATTCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGCAGCAAATTCTGCCCTTTTTTGCTATGTTGTAACCCATTCAAT  400

seq1  GGGTTGTGAACAAAGGGCAAACATTTCAGTAAAGCTGATTTTGGATTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGTGAACAAAGGGCAAACATTTCAGTAAAGCTGATTTTGGATTTCC  450

seq1  AACCTTGAAATGGACAAACTACACAACCCCCCCCCATAGTAAAATACTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTGAAATGGACAAACTACACAACCCCCCCCCATAGTAAAATACTCA  500

seq1  ATCTCAGAGAATATGATTTTATCCTTGTAAACTTATGTCTTTTTGAGATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGAGAATATGATTTTATCCTTGTAAACTTATGTCTTTTTGAGATC  550

seq1  ATAATAAAATAAAATTATTTCCCCTTTGCTTTTCCTGTCTCTGAACTCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAAATAAAATTATTTCCCCTTTGCTTTTCCTGTCTCTGAACTCTA  600

seq1  CCATAGCTTCTCTTTTTTCAAATTCATATTCCACTTAATTTTTTTTGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGCTTCTCTTTTTTCAAATTCATATTCCACTTAATTTTTTTTGTGT  650

seq1  ATACACACACACACACACACACACAAACACACACACACACACACACACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACACACACACACACACACACAAACACACACACACACACACACACAC  700

seq1  ACACACACACGTTTACAACCTGTTCATTCTCTATAATGTTATTTGTATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACGTTTACAACCTGTTCATTCTCTATAATGTTATTTGTATTT  750

seq1  ACGTTTTCAAGGGTGATCATTTGGTATTGGACAACCAATTAATTGATAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTTTCAAGGGTGATCATTTGGTATTGGACAACCAATTAATTGATAAG  800

seq1  CTCCTCCTTGGGGAAGACTTTTCTCCAAGTTTCAGCATTCTCCAGTTGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCTTGGGGAAGACTTTTCTCCAAGTTTCAGCATTCTCCAGTTGCC  850

seq1  TTAACTTCTTTGTATAGAGTTGATGCCTCTTGGGCTTTCTCCTGTCTACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTTCTTTGTATAGAGTTGATGCCTCTTGGGCTTTCTCCTGTCTACC  900

seq1  TTAGTATGATTATC-GTTATACTCAGCTCATGTTT-GAGCAGTTATTTCA  948
      |||||||||||||| |||||||||||||||||||| ||||||||||||||
seq2  TTAGTATGATTATCGGTTATACTCAGCTCATGTTTGGAGCAGTTATTTCA  950

seq1  G-TGACA  954
      | |||||
seq2  GTTGACA  957