BAC Information

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BAC

Clone NameB6Ng01-182P20
Chromosome17 (Build37)
Map Location 42,603,155 - 42,747,912
singlet/doubletdoublet
Overlap geneLOC627626, Opn5
Upstream genenone
Downstream geneGpr115, Gpr111, EG546797, Cd2ap, Tnfrsf21, LOC100043770, Gpr110, Gpr116, Mep1a, LOC100043332, Pla2g7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-182P20.bB6Ng01-182P20.g
ACCGA008733GA008734
length7131,099
definitionB6Ng01-182P20.b B6Ng01-182P20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,603,155 - 42,603,867)(42,746,808 - 42,747,912)
sequence
gaattctccagagaaacagaaccaaaccaatgtggaagatactacatgca
ttcactatataaacattaaacaaatctattaggatagctacataagagtt
aagcacttattgtatggaattcttctgttagactgcagagctgagaggtc
tctaatacatctccaacaaattgtagatccagaaaagctagtctgagtat
agtcctaccttgacatttagacagagagcaaattcttccttattttaagc
ttatcctatttagagctcaaccaaattgaatgagtcccaactataatgaa
ggcagcatactcagtctgatgatttaatctcattctgaaacactcaagaa
aaaagtgtaacaattaactgggttacagttcattgacatacaaaattatt
catcacatgatactaagaaaatattttacatgtccactgaaagtaacata
taatatactgttgggaataagtaaaataaatatgtcatccagaagatatt
ctatggacataatatacagcattcagatatttgaatatatttactgcatt
gtctaaatatcttcattattattcatattttggtatggcatggacagaac
tctagacaggaacaaacgtatccatgtgttatgggcagtgatggaaaatc
aatggcatgtgagcacttgtgtgtggaaactaaaagggggcctggggaag
aggggggagggag

gaattctttatctcaaagctacttcatttggtcacttgattactaggttt
gatttctggctatcaaaagagtgataattgataatttttctgttttaaaa
agaatggctcttagacaccatctactttagcttcattttctcataaatga
gggaactctggcccaatataacagtgacagtgaacactgctttataagtt
gcacctcagtcctatgaagataaaaattattctggtgatcaatgaaattc
cacactttggtgaaaagagtttttgtgtataactcacacagggttgaatc
tgccttatgttagactgtattgttcaaactggcagccacccatggctcct
gagtggacaaactgttacctttcaaatgagcagattgtagtgaaaatgca
cgcctcctattgaaggcttagtacttggaaaataatgtacaaacatctta
ctgatattttgaaatatgaaatgtccattgaactcataatttctggatta
tgagtttatggattagatttatacataatttatggattagtagattaagt
attaaattattaaaactaattttcttttgtgcttttatgctgcttaatgt
ggctaccagaaaaaaaacccagcaacatatgtatagctcacatttctggt
ttatatttctactgaattgcacaatgcaattttgcaccaatgacattttg
tctgggcgtggtggcatgttttttaaccctagcatttgagagtcagaggc
aggcagatctctatgaactccaggccaaactggtctacataaaattccgg
gccagccagggctaaattgtagcactgtctttaaatatttaccacatttc
tttaattttaagttgctatattaaatttgggtgagctgcgtgcaagtggg
ttctatctttaaggtttatgtgtctttaatatttcagatgttgggttcca
gcctgcttctcaacctttcttttctcttcctctttctttgttctcactct
ccctccttccctttttttctctgccctcctctctcattctgttaatggac
tgtgaagattcatgtaatcctggaatttgtaaaaacaaccctagaatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_42603155_42603867
seq2: B6Ng01-182P20.b_47_759

seq1  GAATTCTCCAGAGAAACAGAACCAAACCAATGTGGAAGATACTACATGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCAGAGAAACAGAACCAAACCAATGTGGAAGATACTACATGCA  50

seq1  TTCACTATATAAACATTAAACAAATCTATTAGGATAGCTACATAAGAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTATATAAACATTAAACAAATCTATTAGGATAGCTACATAAGAGTT  100

seq1  AAGCACTTATTGTATGGAATTCTTCTGTTAGACTGCAGAGCTGAGAGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTTATTGTATGGAATTCTTCTGTTAGACTGCAGAGCTGAGAGGTC  150

seq1  TCTAATACATCTCCAACAAATTGTAGATCCAGAAAAGCTAGTCTGAGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATACATCTCCAACAAATTGTAGATCCAGAAAAGCTAGTCTGAGTAT  200

seq1  AGTCCTACCTTGACATTTAGACAGAGAGCAAATTCTTCCTTATTTTAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTACCTTGACATTTAGACAGAGAGCAAATTCTTCCTTATTTTAAGC  250

seq1  TTATCCTATTTAGAGCTCAACCAAATTGAATGAGTCCCAACTATAATGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCTATTTAGAGCTCAACCAAATTGAATGAGTCCCAACTATAATGAA  300

seq1  GGCAGCATACTCAGTCTGATGATTTAATCTCATTCTGAAACACTCAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCATACTCAGTCTGATGATTTAATCTCATTCTGAAACACTCAAGAA  350

seq1  AAAAGTGTAACAATTAACTGGGTTACAGTTCATTGACATACAAAATTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGTAACAATTAACTGGGTTACAGTTCATTGACATACAAAATTATT  400

seq1  CATCACATGATACTAAGAAAATATTTTACATGTCCACTGAAAGTAACATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACATGATACTAAGAAAATATTTTACATGTCCACTGAAAGTAACATA  450

seq1  TAATATACTGTTGGGAATAAGTAAAATAAATATGTCATCCAGAAGATATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATACTGTTGGGAATAAGTAAAATAAATATGTCATCCAGAAGATATT  500

seq1  CTATGGACATAATATACAGCATTCAGATATTTGAATATATTTACTGCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGACATAATATACAGCATTCAGATATTTGAATATATTTACTGCATT  550

seq1  GTCTAAATATCTTCATTATTATTCATATTTTGGTATGGCATGGACAGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAAATATCTTCATTATTATTCATATTTTGGTATGGCATGGACAGAAC  600

seq1  TCTAGACAGGAACAAACGTATCCATGTGTTATGGGCAGTGATGGAAAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGACAGGAACAAACGTATCCATGTGTTATGGGCAGTGATGGAAAATC  650

seq1  AATGGCATGTGAGCACTTGTGTGTGGAAACTAAAAGGGGGCCTGGGGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCATGTGAGCACTTGTGTGTGGAAACTAAAAGGGGGCCTGGGGAAG  700

seq1  AGGGGGGAGGGAG  713
      |||||||||||||
seq2  AGGGGGGAGGGAG  713


seq1: chr17_42746808_42747912
seq2: B6Ng01-182P20.g_65_1163 (reverse)

seq1  ACATTCTAGTGTGTTTTTTTTTCCAATTTCAGGAATTACATGAAATTCTT  50
      ||||||||  | ||| ||||| | |||| |||| ||||||||||  ||||
seq2  ACATTCTA--GGGTTGTTTTTACAAATTCCAGG-ATTACATGAA--TCTT  45

seq1  CACCAGT-CATAAACAG-ATGAGAGAGGGAGGGGA-AGAGAAAAAGGGAG  97
      || |||| ||| ||||| |||||||| |||||| | ||| ||||||||| 
seq2  CA-CAGTCCATTAACAGAATGAGAGA-GGAGGGCAGAGAAAAAAAGGGAA  93

seq1  GGAGGGAGAGTGGAAGAAACAAAGAAAGGAGGGAGAG-AAAGAAAGGTTG  146
      ||||||||||||  || |||||||||| |||| |||| ||||||||||||
seq2  GGAGGGAGAGTG--AG-AACAAAGAAA-GAGGAAGAGAAAAGAAAGGTTG  139

seq1  AGAAAGCAGGCTGGAA-CCAACATCTGAAATATTAAAGACACATAAACC-  194
      || ||||||||||||| |||||||||||||||||||||||||||||||| 
seq2  AG-AAGCAGGCTGGAACCCAACATCTGAAATATTAAAGACACATAAACCT  188

seq1  TAAAGATAGAACCCACCTGCACGCAGCTCACCCAAATTTAATATAGCAAC  244
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TAAAGATAGAACCCACTTGCACGCAGCTCACCCAAATTTAATATAGCAAC  238

seq1  TTTAAATTAAAGAAATGTGGTAAATATTTAAAGACAGTGCTACAATTTAG  294
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATTAAAGAAATGTGGTAAATATTTAAAGACAGTGCTACAATTTAG  288

seq1  CCCTGGCTGGCCCGGAATTTTATGTAGACCAGTTTGGCCTGGAGTTCATA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGCTGGCCCGGAATTTTATGTAGACCAGTTTGGCCTGGAGTTCATA  338

seq1  GAGATCTGCCTGCCTCTGACTCTCAAATGCTAGGGTTAAAAAACATGCCA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCTGCCTGCCTCTGACTCTCAAATGCTAGGGTTAAAAAACATGCCA  388

seq1  CCACGCCCAGACAAAATGTCATTGGTGCAAAATTGCATTGTGCAATTCAG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGCCCAGACAAAATGTCATTGGTGCAAAATTGCATTGTGCAATTCAG  438

seq1  TAGAAATATAAACCAGAAATGTGAGCTATACATATGTTGCTGGGTTTTTT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATATAAACCAGAAATGTGAGCTATACATATGTTGCTGGGTTTTTT  488

seq1  TTCTGGTAGCCACATTAAGCAGCATAAAAGCACAAAAGAAAATTAGTTTT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGTAGCCACATTAAGCAGCATAAAAGCACAAAAGAAAATTAGTTTT  538

seq1  AATAATTTAATACTTAATCTACTAATCCATAAATTATGTATAAATCTAAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTTAATACTTAATCTACTAATCCATAAATTATGTATAAATCTAAT  588

seq1  CCATAAACTCATAATCCAGAAATTATGAGTTCAATGGACATTTCATATTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAACTCATAATCCAGAAATTATGAGTTCAATGGACATTTCATATTT  638

seq1  CAAAATATCAGTAAGATGTTTGTACATTATTTTCCAAGTACTAAGCCTTC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATATCAGTAAGATGTTTGTACATTATTTTCCAAGTACTAAGCCTTC  688

seq1  AATAGGAGGCGTGCATTTTCACTACAATCTGCTCATTTGAAAGGTAACAG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGAGGCGTGCATTTTCACTACAATCTGCTCATTTGAAAGGTAACAG  738

seq1  TTTGTCCACTCAGGAGCCATGGGTGGCTGCCAGTTTGAACAATACAGTCT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCCACTCAGGAGCCATGGGTGGCTGCCAGTTTGAACAATACAGTCT  788

seq1  AACATAAGGCAGATTCAACCCTGTGTGAGTTATACACAAAAACTCTTTTC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAAGGCAGATTCAACCCTGTGTGAGTTATACACAAAAACTCTTTTC  838

seq1  ACCAAAGTGTGGAATTTCATTGATCACCAGAATAATTTTTATCTTCATAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAGTGTGGAATTTCATTGATCACCAGAATAATTTTTATCTTCATAG  888

seq1  GACTGAGGTGCAACTTATAAAGCAGTGTTCACTGTCACTGTTATATTGGG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAGGTGCAACTTATAAAGCAGTGTTCACTGTCACTGTTATATTGGG  938

seq1  CCAGAGTTCCCTCATTTATGAGAAAATGAAGCTAAAGTAGATGGTGTCTA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGTTCCCTCATTTATGAGAAAATGAAGCTAAAGTAGATGGTGTCTA  988

seq1  AGAGCCATTCTTTTTAAAACAGAAAAATTATCAATTATCACTCTTTTGAT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCATTCTTTTTAAAACAGAAAAATTATCAATTATCACTCTTTTGAT  1038

seq1  AGCCAGAAATCAAACCTAGTAATCAAGTGACCAAATGAAGTAGCTTTGAG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGAAATCAAACCTAGTAATCAAGTGACCAAATGAAGTAGCTTTGAG  1088

seq1  ATAAAGAATTC  1105
      |||||||||||
seq2  ATAAAGAATTC  1099


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