BAC Information

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BAC

Clone NameB6Ng01-183G10
Chromosome17 (Build37)
Map Location 81,780,089 - 81,946,490
singlet/doubletdoublet
Overlap geneSlc8a1
Upstream geneSos1, Cdkl4, F420015M19Rik, Map4k3, LOC100043697, C230072F16Rik, LOC675572, EG668830, Tmem178, Thumpd2, LOC100043700, LOC100043704
Downstream geneEG668832, LOC100043707, LOC625467, LOC668836, EG433141, EG625514
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-183G10.bB6Ng01-183G10.g
ACCGA009036GA009037
length1,1471,111
definitionB6Ng01-183G10.b B6Ng01-183G10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,780,089 - 81,781,211)(81,945,398 - 81,946,490)
sequence
gaattccaaaggctttgcacctgttcaactacatccctccttctgagagc
actgagaagtatcataggcaactggctggccaggctagtttgcttgttag
taggattttggagaagaaatgtcagagacaagacaatcaacacataggca
agatggagactggctcttttgggaatgtctgaccttaactagaactcgtg
aaagatccacaggctgagtgttgggtgatgagatatcagccgacagattg
ggtgaggactccctccctccttttctcccaacatgccaaactacatttct
agaaaatgttaactggtaggtacatggttgcttgcctgcttggtaccatc
tctcaagggaaaatacaaaatctcattctattaacttccagaagttgacc
ttgaccagcttatttccccccaccccccagaactgttctcaacgctcaca
atcaaaggcagcagaaggaatcaaattaaccctaatgacttcctgtctaa
aacacttgttaagcaaacaaaaggaatagtcatgaatttctttctttaag
atatttgcttctattttgggaaggatgccagttttccaaacaattctcaa
acaactgtgtacatttacctgaagaataagactccttctctgtactttgt
ttcatttatgagagaaaattaacttgacatgaatttttgggtactatgca
gaatacaatttaggttattcaacatgtaaaatgtatttttgtttttaata
tacatatccctatggtatgggagaaataaggtagaggagaacaagtacgt
ttgaaacaatgaaataatttccaagaaaaagaatcttgcaactggtaatc
caactttttctaaagtttgttattacactgcttaaaatgcaaacctttga
cagaaaaaaaagactaaaaccgttatttcacatttgctattattgtctaa
ggctggttcatctaaaaccactttagtcactgatagatctgtctgcacca
tggtggttatggggactagactccagtctaatacccccctcctatgtatt
gaattcaattataaaattagttcctaaaaaattatttagtaaacatataa
aaatgaagttgttcctttttgtaattgcaaaaagtattaaagttatc
gaattcatcaccaagtccacgtggtgggctgtggcagtgagctgcaattt
attctactgagaggaacgagcctggtgataaggttggtaggcctggggaa
ctctagcaacctcttcatttcagagtactcatcttcaaaatgacagagct
gggaggacagcttcaagacttttcaagtgggtgctccatggttccgatag
cctgagtgtatatgccctcagttaggtttgctgctattgaactatgttct
tcagttcgggatactgaaccttgtcgtactccagtttctcccctccctta
tttgctcaatcaggaatttgccttgccctttctttcctacactgccaact
gtgaaccttttcgtgaatgtttttcatgcagtctgccgtctctgactggg
ttcacccgactccttttgattacagtcacccttagctacactggaggtat
gccttttgtgactgtggcttccagccttaggcaaaaacaataggtttggg
cctgtgccaatccagtacctattggctttgtatattgcaattgctgaaaa
cattagtacctagttatacctgctatgatgtggataaacctgagcgcaaa
ctagaacactagtgattattcttacttgaaacttgattcaactgaacatt
tgctgaatgtaggagttttaatgtgagcaaacataacctgaatatctcct
gttagctatagagtgcaactggatacagaatccagtgccccaaatacctt
gggatgaagaaaggtcatcgtttacctactccatactccaggaaggcaaa
tgctgttgtcttctccaactgctgagagcctgtctattttttaaaggccc
ccagagaagaaactgcttcaaagagatgagatgacaaagcttttgctcta
tgcaaggatcctcagtgggagcttattcagcccaggtgtctgatctccat
gggcgtctaccctaactctcttcctcccccgcaggactgagccactagcg
gaaacttattgtgagccctggtactccttaagaggtttgttttttgattt
tgttttgatttccttttttgtcaactggaaaaattccttctgccttacat
tgagcaagaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_81780089_81781211
seq2: B6Ng01-183G10.b_43_1189

seq1  GAATTCCAAAGGCTTTGCACCTGTTCAACTACATCCCTCCTTCTGAGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAGGCTTTGCACCTGTTCAACTACATCCCTCCTTCTGAGAGC  50

seq1  ACTGAGAAGTATCATAGGCAACTGGCTGGCCAGGCTAGTTTGCTTGTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGAAGTATCATAGGCAACTGGCTGGCCAGGCTAGTTTGCTTGTTAG  100

seq1  TAGGATTTTGGAGAAGAAATGTCAGAGACAAGACAATCAACACATAGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATTTTGGAGAAGAAATGTCAGAGACAAGACAATCAACACATAGGCA  150

seq1  AGATGGAGACTGGCTCTTTTGGGAATGTCTGACCTTAACTAGAACTCGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGAGACTGGCTCTTTTGGGAATGTCTGACCTTAACTAGAACTCGTG  200

seq1  AAAGATCCACAGGCTGAGTGTTGGGTGATGAGATATCAGCCGACAGATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATCCACAGGCTGAGTGTTGGGTGATGAGATATCAGCCGACAGATTG  250

seq1  GGTGAGGACTCCCTCCCTCCTTTTCTCCCAACATGCCAAACTACATTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGGACTCCCTCCCTCCTTTTCTCCCAACATGCCAAACTACATTTCT  300

seq1  AGAAAATGTTAACTGGTAGGTACATGGTTGCTTGCCTGCTTGGTACCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATGTTAACTGGTAGGTACATGGTTGCTTGCCTGCTTGGTACCATC  350

seq1  TCTCAAGGGAAAATACAAAATCTCATTCTATTAACTTCCAGAAGTTGACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAGGGAAAATACAAAATCTCATTCTATTAACTTCCAGAAGTTGACC  400

seq1  TTGACCAGCTTATTTCCCCCCACCCCCCAGAACTGTTCTCAACGCTCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCAGCTTATTTCCCCCCACCCCCCAGAACTGTTCTCAACGCTCACA  450

seq1  ATCAAAGGCAGCAGAAGGAATCAAATTAACCCTAATGACTTCCTGTCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAGGCAGCAGAAGGAATCAAATTAACCCTAATGACTTCCTGTCTAA  500

seq1  AACACTTGTTAAGCAAACAAAAGGAATAGTCATGAATTTCTTTCTTTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTGTTAAGCAAACAAAAGGAATAGTCATGAATTTCTTTCTTTAAG  550

seq1  ATATTTGCTTCTATTTTGGGAAGGATGCCAGTTTTCCAAACAATTCTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGCTTCTATTTTGGGAAGGATGCCAGTTTTCCAAACAATTCTCAA  600

seq1  ACAACTGTGTACATTTACCTGAAGAATAAGACTCCTTCTCTGTACTTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTGTGTACATTTACCTGAAGAATAAGACTCCTTCTCTGTACTTTGT  650

seq1  TTCATTTATGAGAGAAAATTAACTTGACATGAATTTTTGGGTACTATGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTATGAGAGAAAATTAACTTGACATGAATTTTTGGGTACTATGCA  700

seq1  GAATACAATTTAGGTTATTCAACATGTAAAATGTATTTTTGTTTTTAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACAATTTAGGTTATTCAACATGTAAAATGTATTTTTGTTTTTAATA  750

seq1  TACATATCCCTATGGTATGGGAGAAATAAGGTAGAGGAGAACAAGTACG-  799
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TACATATCCCTATGGTATGGGAGAAATAAGGTAGAGGAGAACAAGTACGT  800

seq1  TTGAAACAATGAAATAA-TTCCAAGAAAAAGAATCTTGCAACTGGTAATC  848
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTGAAACAATGAAATAATTTCCAAGAAAAAGAATCTTGCAACTGGTAATC  850

seq1  CAAC-TTTTCTAAAG-TTGTTATTACACTGCTTAAAATGCAAACCTTTGA  896
      |||| |||||||||| ||||||||||||||||||||||||||||||||||
seq2  CAACTTTTTCTAAAGTTTGTTATTACACTGCTTAAAATGCAAACCTTTGA  900

seq1  CAG-AAAAAAAGACTAAAAACCGTA-TTCACA-TTGCTA-TATTGTCTAA  942
      ||| ||||||||||||||| |  || |||||| |||||| ||||||||||
seq2  CAGAAAAAAAAGACTAAAACCGTTATTTCACATTTGCTATTATTGTCTAA  950

seq1  GGCTGGTTCATCTAAAACCAC-TTAGTCACTGATAGATCTGTCTGCACCA  991
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GGCTGGTTCATCTAAAACCACTTTAGTCACTGATAGATCTGTCTGCACCA  1000

seq1  T-GTGGTTAT-GGGACTAGACTCCAGTCTAATA-CCCCCTCCTATGTATT  1038
      | |||||||| |||||||||||||||||||||| ||||||||||||||||
seq2  TGGTGGTTATGGGGACTAGACTCCAGTCTAATACCCCCCTCCTATGTATT  1050

seq1  GATTCAAATTAT-AAATTAG-TCCTAAAATA----TTAGTAACAATATAA  1082
      || |  |||||| ||||||| |||||||| |    |||||||  ||||||
seq2  GAATTCAATTATAAAATTAGTTCCTAAAAAATTATTTAGTAAACATATAA  1100

seq1  AAATGGAGTTGTCC---TTTGAAATGG--AAAAGTATT-AAGTTATC  1123
      ||||| |||||| |   |||| ||| |  ||||||||| ||||||||
seq2  AAATGAAGTTGTTCCTTTTTGTAATTGCAAAAAGTATTAAAGTTATC  1147

seq1: chr17_81945398_81946490
seq2: B6Ng01-183G10.g_65_1175 (reverse)

seq1  GTTCTT-CTCAATGTAA-GCAGAAGGAATTTCT-CAGTTGACAAAAAA-G  46
      |||||| |||||||||| ||||||||||||| | |||||||||||||| |
seq2  GTTCTTGCTCAATGTAAGGCAGAAGGAATTTTTCCAGTTGACAAAAAAGG  50

seq1  AAATCAAAACAAAATC--AAAACAAACCTCTTAAGGAGTACCA-GGCTCA  93
      ||||||||||||||||  ||||||||||||||||||||||||| ||||||
seq2  AAATCAAAACAAAATCAAAAAACAAACCTCTTAAGGAGTACCAGGGCTCA  100

seq1  CAATTAG-TTCCGCTAGTGGCTCAGTCCTGCGGGGGAGG-AGAGAGTTA-  140
      |||| || ||||||||||||||||||||||||||||||| ||||||||| 
seq2  CAATAAGTTTCCGCTAGTGGCTCAGTCCTGCGGGGGAGGAAGAGAGTTAG  150

seq1  GGTAGACG-CCATGGAGATCAGACACCT-GGCTG-ATTAGCT-CCACTGA  186
      |||||||| ||||||||||||||||||| ||||| || |||| |||||||
seq2  GGTAGACGCCCATGGAGATCAGACACCTGGGCTGAATAAGCTCCCACTGA  200

seq1  GGATCC-TGCATAGAGC-AAAGCTTTGTCATCTCATCTCTTTGAAGCAGT  234
      |||||| |||||||||| ||||||||||||||||||||||||||||||||
seq2  GGATCCTTGCATAGAGCAAAAGCTTTGTCATCTCATCTCTTTGAAGCAGT  250

seq1  TTCTTCTCTGGGGGCCTTT-AAAAATAGACAGGCTCTCAGCAGTTGGAGA  283
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTCTTCTCTGGGGGCCTTTAAAAAATAGACAGGCTCTCAGCAGTTGGAGA  300

seq1  AGAC-ACAGCATTTGCCTTCCTGGAGTATGGAGTAGGTAAACGATGACCT  332
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAACAGCATTTGCCTTCCTGGAGTATGGAGTAGGTAAACGATGACCT  350

seq1  TTCTTCATCCCAAGGTATTTGGGGCACTGGATTCTGTATCCAGTTGCACT  382
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCATCCCAAGGTATTTGGGGCACTGGATTCTGTATCCAGTTGCACT  400

seq1  CTATAGCTAACAGGAGATATTCAGGTTATGTTTGCTCACATTAAAACTCC  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGCTAACAGGAGATATTCAGGTTATGTTTGCTCACATTAAAACTCC  450

seq1  TACATTCAGCAAATGTTCAGTTGAATCAAGTTTCAAGTAAGAATAATCAC  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTCAGCAAATGTTCAGTTGAATCAAGTTTCAAGTAAGAATAATCAC  500

seq1  TAGTGTTCTAGTTTGCGCTCAGGTTTATCCACATCATAGCAGGTATAACT  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTTCTAGTTTGCGCTCAGGTTTATCCACATCATAGCAGGTATAACT  550

seq1  AGGTACTAATGTTTTCAGCAATTGCAATATACAAAGCCAATAGGTACTGG  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACTAATGTTTTCAGCAATTGCAATATACAAAGCCAATAGGTACTGG  600

seq1  ATTGGCACAGGCCCAAACCTATTGTTTTTGCCTAAGGCTGGAAGCCACAG  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCACAGGCCCAAACCTATTGTTTTTGCCTAAGGCTGGAAGCCACAG  650

seq1  TCACAAAAGGCATACCTCCAGTGTAGCTAAGGGTGACTGTAATCAAAAGG  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAAAGGCATACCTCCAGTGTAGCTAAGGGTGACTGTAATCAAAAGG  700

seq1  AGTCGGGTGAACCCAGTCAGAGACGGCAGACTGCATGAAAAACATTCACG  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGGGTGAACCCAGTCAGAGACGGCAGACTGCATGAAAAACATTCACG  750

seq1  AAAAGGTTCACAGTTGGCAGTGTAGGAAAGAAAGGGCAAGGCAAATTCCT  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTTCACAGTTGGCAGTGTAGGAAAGAAAGGGCAAGGCAAATTCCT  800

seq1  GATTGAGCAAATAAGGGAGGGGAGAAACTGGAGTACGACAAGGTTCAGTA  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAGCAAATAAGGGAGGGGAGAAACTGGAGTACGACAAGGTTCAGTA  850

seq1  TCCCGAACTGAAGAACATAGTTCAATAGCAGCAAACCTAACTGAGGGCAT  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGAACTGAAGAACATAGTTCAATAGCAGCAAACCTAACTGAGGGCAT  900

seq1  ATACACTCAGGCTATCGGAACCATGGAGCACCCACTTGAAAAGTCTTGAA  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACTCAGGCTATCGGAACCATGGAGCACCCACTTGAAAAGTCTTGAA  950

seq1  GCTGTCCTCCCAGCTCTGTCATTTTGAAGATGAGTACTCTGAAATGAAGA  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCTCCCAGCTCTGTCATTTTGAAGATGAGTACTCTGAAATGAAGA  1000

seq1  GGTTGCTAGAGTTCCCCAGGCCTACCAACCTTATCACCAGGCTCGTTCCT  1032
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCTAGAGTTCCCCAGGCCTACCAACCTTATCACCAGGCTCGTTCCT  1050

seq1  CTCAGTAGAATAAATTGCAGCTCACTGCCACAGCCCACCACGTGGACTTG  1082
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTAGAATAAATTGCAGCTCACTGCCACAGCCCACCACGTGGACTTG  1100

seq1  GTGATGAATTC  1093
      |||||||||||
seq2  GTGATGAATTC  1111