BAC Information

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BAC

Clone NameB6Ng01-184C21
Chromosome17 (Build37)
Map Location 27,686,208 - 27,795,485
singlet/doubletdoublet
Overlap geneHmga1, AI413582, Nudt3, Rps10, Pacsin1
Upstream geneErgic1, Atp6v0e, A930001N09Rik, Bnip1, Nkx2-5, Kifc1, Phf1, Cuta, Syngap1, Zbtb9, Bak1, Ggnbp1, Itpr3, 2900010M23Rik, Ihpk3, Lemd2, LOC100042713, ENSMUSG00000073430, Grm4, LOC677010
Downstream geneSpdef, LOC100042744, D17Wsu92e, EG666682, Snrpc, F830021D11Rik, Taf11, Anks1, Tcp11, 4930526A20Rik, Scube3, LOC100042764, Zfp523, Def6, Ppard, 1810013A23Rik, Fance, Rpl10a, Tead3, Tulp1, Fkbp5, 4930511I11Rik, Gm749, Clps, Tmhs, Srpk1, Slc26a8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-184C21.bB6Ng01-184C21.g
ACCGA009619GA009620
length8361,023
definitionB6Ng01-184C21.b B6Ng01-184C21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,794,654 - 27,795,485)(27,686,208 - 27,687,225)
sequence
gaattccaggccagtgagctacatagtgagtgagaccctgtctcaaaaaa
aaaaaaaaaaaaaaaaaatctactaagcagggtggtggtggcacatgtct
ttgatcccaccactctggtgagttcaagaccaagctggtcttttaaaaaa
aaaaggaggggggggggaaagctggagagatggctcagtggttaagagca
ctgtctgctcttccagaggacctgagttcaaatcccagcacccacatggt
gactcacaaccatttctaatgggatccaaagccctcttgtggttgtctaa
agacagtgacaatgtactcacatacattaaataaataaataaatcttaaa
aaaaaaaaaaagaccaagttggtctacagagtgagttctaagatagccag
ggctacacagagaaaccctgtctcaaacaaaacaagacaaaacaaaacag
tataataataataatactagtagaaatgtaaaaaacaaaacaaaacaaaa
atttaaatgtaaaactaagggttggcgccatatatcacagaagaaacaac
ctagcctagaatccctcagtgaggggctaggggcgtggctcagcagaaag
tgcttgtcataaaatgttccaggcctttggctggagcctgttcctcctct
cctcagcacagtcattctctcctgtcctcttcttgcttctgtggggagga
cccccgatcagtgagctccttccccattggccctttcctgtccttcctcc
cctgacagacccccagaaagccactctttcttccgtgagtctcccactgc
cactcaatctctgccagggatgcaaccatctcctgc
gaattctctgatggtcagcacctagcccctccttgggggcccctgagctc
gctcagggctgaggctgctgccagactagaggtgggggatgggaacacgc
cccaaaggacaaggacaaaggcagcagaggggcatgagcttcagtggcag
agcgcacatgctcctcacccaggcctgggaactggcagggcaccctggat
ggtgacccagaaacctggctgtcagcggctcccgcctagcactgccccca
agaactggaatggctggccagtgtcagcatgactatctcgggattctctg
ttcaccccaccagatgatttagggctgtagaggatccccagtgcgagtta
acccacgcctagagcccactgcctgctcccaggagattttatcttggcga
gccactgatgtgtggtgctgtggttaggtccctagaaaggagaatgcaaa
gaggctgcctgagccagtctcaagggagactgggtcctggaagtcacagt
gagccctgcagtggggacaggcctggcaagcacaggatggatgaagacca
ggaagatgggaaagcagggctctctgctgcccgctccaggctagattcca
ggccaacttcacagctccagcccccacccccatctcctaccaggagctag
ctcccctcccttatgcccacccccagctacctacctcctccagccctcag
gaggccttcagcccacccatccattcaccagacttacactcacagttagg
ccttgggcctggtgtccagcttgctggggttgaagatgaagaaaaccaag
cctaggaggttaataaatcccctggagtgtgctcactgccccgccccaca
agacttgctggtcccttccacaaccaccgtgctcactccctaacacttgc
ctcttgtttgactacacaacgtttttgtgcttctacaacctgattggtag
acacccttacacacacacacatatccaggccacatatccccaaacagaga
ctagggacttgtttttctcaacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_27794654_27795485
seq2: B6Ng01-184C21.b_42_877 (reverse)

seq1  GCAGGAGATGGTTGCATCCCTGGCAG-GATTGAGTGGCAGTGGGAGACTC  49
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GCAGGAGATGGTTGCATCCCTGGCAGAGATTGAGTGGCAGTGGGAGACTC  50

seq1  ACGGAAG-AAGAGTGGC-TTCTGGGGGTCTGTCAGGGGAGGAAGGACAGG  97
      ||||||| ||||||||| ||||||||||||||||||||||||||||||||
seq2  ACGGAAGAAAGAGTGGCTTTCTGGGGGTCTGTCAGGGGAGGAAGGACAGG  100

seq1  -AAGGGCCAATGGGGAAGGAGCTCACTGATCGGGGGTCCTCCCCACAGAA  146
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGCCAATGGGGAAGGAGCTCACTGATCGGGGGTCCTCCCCACAGAA  150

seq1  GCAAGAAGAGGACAGGAGAGAATGACTGTGCTGAGGAGAGGAGGAACAGG  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAAGAGGACAGGAGAGAATGACTGTGCTGAGGAGAGGAGGAACAGG  200

seq1  CTCCAGCCAAAGGCCTGGAACATTTTATGACAAGCACTTTCTGCTGAGCC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCCAAAGGCCTGGAACATTTTATGACAAGCACTTTCTGCTGAGCC  250

seq1  ACGCCCCTAGCCCCTCACTGAGGGATTCTAGGCTAGGTTGTTTCTTCTGT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCCCTAGCCCCTCACTGAGGGATTCTAGGCTAGGTTGTTTCTTCTGT  300

seq1  GATATATGGCGCCAACCCTTAGTTTTACATTTAAATTTTTGTTTTGTTTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATATGGCGCCAACCCTTAGTTTTACATTTAAATTTTTGTTTTGTTTT  350

seq1  GTTTTTTACATTTCTACTAGTATTATTATTATTATACTGTTTTGTTTTGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTACATTTCTACTAGTATTATTATTATTATACTGTTTTGTTTTGT  400

seq1  CTTGTTTTGTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTATCTTAGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTTGTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTATCTTAGA  450

seq1  ACTCACTCTGTAGACCAACTTGGTCTTTTTTTTTTTTTTAAGATTTATTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTCTGTAGACCAACTTGGTCTTTTTTTTTTTTTTAAGATTTATTT  500

seq1  ATTTATTTAATGTATGTGAGTACATTGTCACTGTCTTTAGACAACCACAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTAATGTATGTGAGTACATTGTCACTGTCTTTAGACAACCACAA  550

seq1  GAGGGCTTTGGATCCCATTAGAAATGGTTGTGAGTCACCATGTGGGTGCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCTTTGGATCCCATTAGAAATGGTTGTGAGTCACCATGTGGGTGCT  600

seq1  GGGATTTGAACTCAGGTCCTCTGGAAGAGCAGACAGTGCTCTTAACCACT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTTGAACTCAGGTCCTCTGGAAGAGCAGACAGTGCTCTTAACCACT  650

seq1  GAGCCATCTCTCCAGCTTTCCCCCCCCCCTCCTTTTTTTTTTAAAAGACC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCATCTCTCCAGCTTTCCCCCCCCCCTCCTTTTTTTTTTAAAAGACC  700

seq1  AGCTTGGTCTTGAACTCACCAGAGTGGTGGGATCAAAGACATGTGCCACC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGGTCTTGAACTCACCAGAGTGGTGGGATCAAAGACATGTGCCACC  750

seq1  ACCACCCTGCTTAGTAGATTTTTTTTTTTTTTTTTTTTTTTTGAGACAGG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCCTGCTTAGTAGATTTTTTTTTTTTTTTTTTTTTTTTGAGACAGG  800

seq1  GTCTCACTCACTATGTAGCTCACTGGCCTGGAATTC  832
      ||||||||||||||||||||||||||||||||||||
seq2  GTCTCACTCACTATGTAGCTCACTGGCCTGGAATTC  836

seq1: chr17_27686208_27687225
seq2: B6Ng01-184C21.g_65_1087

seq1  GAATTCTCTGATGGTCAGCACCTAGCCCCTCCTTGGGGGCCCCTGAGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGATGGTCAGCACCTAGCCCCTCCTTGGGGGCCCCTGAGCTC  50

seq1  GCTCAGGGCTGAGGCTGCTGCCAGACTAGAGGTGGGGGATGGGAACACGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGGGCTGAGGCTGCTGCCAGACTAGAGGTGGGGGATGGGAACACGC  100

seq1  CCCAAAGGACAAGGACAAAGGCAGCAGAGGGGCATGAGCTTCAGTGGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAGGACAAGGACAAAGGCAGCAGAGGGGCATGAGCTTCAGTGGCAG  150

seq1  AGCGCACATGCTCCTCACCCAGGCCTGGGAACTGGCAGGGCACCCTGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCACATGCTCCTCACCCAGGCCTGGGAACTGGCAGGGCACCCTGGAT  200

seq1  GGTGACCCAGAAACCTGGCTGTCAGCGGCTCCCGCCTAGCACTGCCCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACCCAGAAACCTGGCTGTCAGCGGCTCCCGCCTAGCACTGCCCCCA  250

seq1  AGAACTGGAATGGCTGGCCAGTGTCAGCATGACTATCTCGGGATTCTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGGAATGGCTGGCCAGTGTCAGCATGACTATCTCGGGATTCTCTG  300

seq1  TTCACCCCACCAGATGATTTAGGGCTGTAGAGGATCCCCAGTGCGAGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCCCACCAGATGATTTAGGGCTGTAGAGGATCCCCAGTGCGAGTTA  350

seq1  ACCCACGCCTAGAGCCCACTGCCTGCTCCCAGGAGATTTTATCTTGGCGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACGCCTAGAGCCCACTGCCTGCTCCCAGGAGATTTTATCTTGGCGA  400

seq1  GCCACTGATGTGTGGTGCTGTGGTTAGGTCCCTAGAAAGGAGAATGCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTGATGTGTGGTGCTGTGGTTAGGTCCCTAGAAAGGAGAATGCAAA  450

seq1  GAGGCTGCCTGAGCCAGTCTCAAGGGAGACTGGGTCCTGGAAGTCACAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGCCTGAGCCAGTCTCAAGGGAGACTGGGTCCTGGAAGTCACAGT  500

seq1  GAGCCCTGCAGTGGGGACAGGCCTGGCAAGCACAGGATGGATGAAGACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCTGCAGTGGGGACAGGCCTGGCAAGCACAGGATGGATGAAGACCA  550

seq1  GGAAGATGGGAAAGCAGGGCTCTCTGCTGCCCGCTCCAGGCTAGATTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGATGGGAAAGCAGGGCTCTCTGCTGCCCGCTCCAGGCTAGATTCCA  600

seq1  GGCCAACTTCACAGCTCCAGCCCCCACCCCCATCTCCTACCAGGAGCTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAACTTCACAGCTCCAGCCCCCACCCCCATCTCCTACCAGGAGCTAG  650

seq1  CTCCCCTCCCTTATGCCCACCCCCAGCTACCTACCTCCTCCAGCCCTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCTCCCTTATGCCCACCCCCAGCTACCTACCTCCTCCAGCCCTCAG  700

seq1  GAGGCCTTCAGCCCACCCATCCATTCACCAGACTTACACTCACAGTTAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCTTCAGCCCACCCATCCATTCACCAGACTTACACTCACAGTTAGG  750

seq1  CCTTGGGCCTGGTGTCCAGCTTGCTGGGGTTGAAGATGAAGAAAACCAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGGCCTGGTGTCCAGCTTGCTGGGGTTGAAGATGAAGAAAACCAAG  800

seq1  CCTAGGAGGTTAATAAATCCCCTGGAGTGTGCTCACTGCCCCGCCCCACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGAGGTTAATAAATCCCCTGGAGTGTGCTCACTGCCCCGCCCCACA  850

seq1  AGACCTGCTGGTCCC-TCCACAACCACCGTGCTCACTCCCTAACACTTGC  899
      |||| |||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGACTTGCTGGTCCCTTCCACAACCACCGTGCTCACTCCCTAACACTTGC  900

seq1  CTCTTGTTTGACTACACAACGTTTTTGTGCTTCTACAACCTGATTGGTAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGTTTGACTACACAACGTTTTTGTGCTTCTACAACCTGATTGGTAG  950

seq1  ACACCC-TACACACACACACATATCCAGGCCACATATCCCCAAACAGAGA  998
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCTTACACACACACACATATCCAGGCCACATATCCCCAAACAGAGA  1000

seq1  CCA-GGACT--GTTTTCTCAACC  1018
      | | |||||   |||||||||||
seq2  CTAGGGACTTGTTTTTCTCAACC  1023