BAC Information

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BAC

Clone NameB6Ng01-184E16
Chromosome17 (Build37)
Map Location 26,634,023 - 26,779,847
singlet/doubletdoublet
Overlap geneDusp1, EG666668, Ergic1
Upstream geneSstr5, LOC100042580, Sox8, Tmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1, Pdia2, Arhgdig, Rgs11, Itfg3, LOC100042643, Luc7l, EG383229, EG240055, C230078M08Rik
Downstream geneAtp6v0e, A930001N09Rik, Bnip1, Nkx2-5, Kifc1, Phf1, Cuta, Syngap1, Zbtb9, Bak1, Ggnbp1, Itpr3, 2900010M23Rik, Ihpk3, Lemd2, LOC100042713, ENSMUSG00000073430, Grm4, LOC677010, Hmga1, AI413582, Nudt3, Rps10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-184E16.bB6Ng01-184E16.g
ACCGA009705GA009706
length8711,128
definitionB6Ng01-184E16.b B6Ng01-184E16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,634,023 - 26,634,888)(26,778,722 - 26,779,847)
sequence
gaattcttgtcttggtcaagtacctgccgtgatgtctctagcactactca
tagcagaccaccatcatctgctcccaccccacaagcacagtgcttaccca
ctctagacaggtgcctcaaatgttccttcagccctccaacccaagtgtca
tgccatcatttgggtgggagctagaaaatggctgttctcgcccccttccc
tcagcatcccacacagatcaactctcttctttattgaggaactgacaaag
agcaatgaatgacaggaaggttggccaagagctgtataggaggccagagg
agaatccccaatggccactaaacaaaggacatttccaagaggagacgtgg
gctgttaagtcttcctaccagacaagaagctatgagtcagagccaggagc
gtccccactgacttccccatgcatgagttactaccctccacctcagcaaa
ggcccacaggcaggggaattctctcctgaacaagagggaggaaataagga
gaagtggtggagcgcagggtctctgagtggtgttcctaaggctgatctct
tattgcaaccctcccctaacccagtgctgatccctgtaggagaaccccag
catggccagggcctggctggccagggagccgcctgcttcctgctcaccag
tgctttcagatgctcgactttgtttgcatgccactgagtattgtgggaag
gtctccaagggaaattgcctcatgtggaagggaaagagatggctgagcag
aaaacagtcacttcccctatactggtgcccaggactcatggggggggggg
gggcatgtttaagttcctcccttcactgcaagtgagggagcaccccttgg
tgtgctgggcttgtagtgtaa
gaattccattttctaagccagaaggacagaaggacctcagctggaacaag
gacaacattgtcctttctggggtttggcctgggattacagagaaatagga
aacgtctattgctaagttctgtctgagaaggaagccaggatagagaaaga
caaacagactgaaagtctgggacagatacatgactagatatagccatgtc
tgctgacgacccaacaatcaaaccagcttcatagatcccatctgttctag
aagagtctgactaccgcagactctgccatagcaggaaacgtaccagccag
gattgagacccccgatctcaaaccaatattaaaagtataaagttgggcaa
agcggcactcctagccatgtaggaggctgctatgcctgggctacacagta
agaccctgcttcccctgctcaaggcctcccagaagtacatacatctttag
gcccagtgtccaaatctgacaggtagagagccatcctggctgtcacctct
gctgactctggatccctggagcctcctgggtggagcaggcaccgtgaccc
accagctctggacccaagggtgatgagttggaagccaggaaactgttcat
gtgacagagagtccgtgtaaaagaaaaccgacatcctactgttgctcaga
gtagaagacaaggcagagagaaggaaaagcaaaggaagagaacgcagcag
gaagaaggaccacactggacccaggacggcagggccggagaagacacaga
gaagaagctgaaagggcatgccatcgcagtgcaaacctttaatcctgcta
ctcaggatctctgttgaatctgaggctagcctgatctacagaatgagttc
tcggacagccaggactgaaaatagtgagaccctgtctcaaaaaaccaagt
gctgaaaaaacgttttcacaaagaagaaaaatcaccagcgggcctgaagc
cagtggagatttccctcaggcatcaggtgcactaagtggcaccttcccac
aacacaccagcctaggggacgccaggagttcagcttgcttcttgtaacac
tctcagggtcagaagaatcaaagccacctgcgctcacttggggcccagcc
agcttcaatcttgcttccagcaggcata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_26634023_26634888
seq2: B6Ng01-184E16.b_45_915

seq1  GAATTCTTGTCTTGGTCAAGTACCTGCCGTGATGTCTCTAGCACTACTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTCTTGGTCAAGTACCTGCCGTGATGTCTCTAGCACTACTCA  50

seq1  TAGCAGACCACCATCATCTGCTCCCACCCCACAAGCACAGTGCTTACCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGACCACCATCATCTGCTCCCACCCCACAAGCACAGTGCTTACCCA  100

seq1  CTCTAGACAGGTGCCTCAAATGTTCCTTCAGCCCTCCAACCCAAGTGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGACAGGTGCCTCAAATGTTCCTTCAGCCCTCCAACCCAAGTGTCA  150

seq1  TGCCATCATTTGGGTGGGAGCTAGAAAATGGCTGTTCTCGCCCCCTTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATCATTTGGGTGGGAGCTAGAAAATGGCTGTTCTCGCCCCCTTCCC  200

seq1  TCAGCATCCCACACAGATCAACTCTCTTCTTTATTGAGGAACTGACAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCATCCCACACAGATCAACTCTCTTCTTTATTGAGGAACTGACAAAG  250

seq1  AGCAATGAATGACAGGAAGGTTGGCCAAGAGCTGTATAGGAGGCCAGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATGAATGACAGGAAGGTTGGCCAAGAGCTGTATAGGAGGCCAGAGG  300

seq1  AGAATCCCCAATGGCCACTAAACAAAGGACATTTCCAAGAGGAGACGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCCCCAATGGCCACTAAACAAAGGACATTTCCAAGAGGAGACGTGG  350

seq1  GCTGTTAAGTCTTCCTACCAGACAAGAAGCTATGAGTCAGAGCCAGGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTAAGTCTTCCTACCAGACAAGAAGCTATGAGTCAGAGCCAGGAGC  400

seq1  GTCCCCACTGACTTCCCCATGCATGAGTTACTACCCTCCACCTCAGCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCACTGACTTCCCCATGCATGAGTTACTACCCTCCACCTCAGCAAA  450

seq1  GGCCCACAGGCAGGGGAATTCTCTCCTGAACAAGAGGGAGGAAATAAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCACAGGCAGGGGAATTCTCTCCTGAACAAGAGGGAGGAAATAAGGA  500

seq1  GAAGTGGTGGAGCGCAGGGTCTCTGAGTGGTGTTCCTAAGGCTGATCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGGTGGAGCGCAGGGTCTCTGAGTGGTGTTCCTAAGGCTGATCTCT  550

seq1  TATTGCAACCCTCCCCTAACCCAGTGCTGATCCCTGTAGGAGAACCCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCAACCCTCCCCTAACCCAGTGCTGATCCCTGTAGGAGAACCCCAG  600

seq1  CATGGCCAGGGCCTGGCTGGCCAGGGAGCCGCCTGCTTCCTGCTCACCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCCAGGGCCTGGCTGGCCAGGGAGCCGCCTGCTTCCTGCTCACCAG  650

seq1  TGCTTTCAGATGCTCGACTTTGTTTGCATGCCACTGAGTATTGTGGGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCAGATGCTCGACTTTGTTTGCATGCCACTGAGTATTGTGGGAAG  700

seq1  GTCTCCAAGGGAAATTGCCTCATGTGGAAGGGAAAGAGATGGCTGAGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCAAGGGAAATTGCCTCATGTGGAAGGGAAAGAGATGGCTGAGCAG  750

seq1  AAAACAGTCACTTCCCCTATACTGGTGCCCAGGACTCAT--GGGGGGGGG  798
      |||||||||||||||||||||||||||||||||||||||  |||||||||
seq2  AAAACAGTCACTTCCCCTATACTGGTGCCCAGGACTCATGGGGGGGGGGG  800

seq1  GGGCATGTTTAAGTTCCTCCCTTCACTGCAAGTGA-GGAGCA-CCCTTGG  846
      ||||||||||||||||||||||||||||||||||| |||||| |||||||
seq2  GGGCATGTTTAAGTTCCTCCCTTCACTGCAAGTGAGGGAGCACCCCTTGG  850

seq1  TGTGCTGGGC-TGTAGTGTAA  866
      |||||||||| ||||||||||
seq2  TGTGCTGGGCTTGTAGTGTAA  871

seq1: chr17_26778722_26779847
seq2: B6Ng01-184E16.g_65_1192 (reverse)

seq1  TATGCTTGCTGGAAGC-AGA-TGGAGCCTGCTGGGCCCCAGGTGAGCGCA  48
      ||||| |||||||||| ||| || |||  ||||||||||| |||||||||
seq2  TATGCCTGCTGGAAGCAAGATTGAAGCTGGCTGGGCCCCAAGTGAGCGCA  50

seq1  GGTGGCTTTGATTC-TCTGACCCCTGAGAAGTGTTACCAGAAGCAGGCTG  97
      |||||||||||||| ||||| ||||||| |||||||| ||||||| ||| 
seq2  GGTGGCTTTGATTCTTCTGA-CCCTGAG-AGTGTTACAAGAAGCAAGCT-  97

seq1  GAACCTCTGGCGTCCCCCTAGCTGGTGTGTTGTGGG-AGGTGCCACTTAG  146
      ||||  |||||||||||   |||||||||||||||| |||||||||||||
seq2  GAACTCCTGGCGTCCCCTAGGCTGGTGTGTTGTGGGAAGGTGCCACTTAG  147

seq1  TGCAACTGATGCCTGAGGGAAATCTCCACTGGCTTCAGG-CCGCTGGTGA  195
      |||| |||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGCACCTGATGCCTGAGGGAAATCTCCACTGGCTTCAGGCCCGCTGGTGA  197

seq1  TTTTTCTTCTTTGTGGAAAACGTTTTTTCAGCACTTGGTTTTTTGAGACA  245
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTCTTTGT-GAAAACGTTTTTTCAGCACTTGGTTTTTTGAGACA  246

seq1  GGGTCTCACTA-TTTCAGTCCTGGCTGTCCGAGAACTCATTCTGTAGATC  294
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTCACTATTTTCAGTCCTGGCTGTCCGAGAACTCATTCTGTAGATC  296

seq1  AGGCTAGCCTCAGATTCAACAGAGATCCTGAGTAGCAGGATTAAAGGTTT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAGCCTCAGATTCAACAGAGATCCTGAGTAGCAGGATTAAAGGTTT  346

seq1  GCACTGCGATGGCATGCCCTTTCAGCTTCTTCTCTGTGTCTTCTCCGGCC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGCGATGGCATGCCCTTTCAGCTTCTTCTCTGTGTCTTCTCCGGCC  396

seq1  CTGCCGTCCTGGGTCCAGTGTGGTCCTTCTTCCTGCTGCGTTCTCTTCCT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCGTCCTGGGTCCAGTGTGGTCCTTCTTCCTGCTGCGTTCTCTTCCT  446

seq1  TTGCTTTTCCTTCTCTCTGCCTTGTCTTCTACTCTGAGCAACAGTAGGAT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTTCCTTCTCTCTGCCTTGTCTTCTACTCTGAGCAACAGTAGGAT  496

seq1  GTCGGTTTTCTTTTACACGGACTCTCTGTCACATGAACAGTTTCCTGGCT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGTTTTCTTTTACACGGACTCTCTGTCACATGAACAGTTTCCTGGCT  546

seq1  TCCAACTCATCACCCTTGGGTCCAGAGCTGGTGGGTCACGGTGCCTGCTC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACTCATCACCCTTGGGTCCAGAGCTGGTGGGTCACGGTGCCTGCTC  596

seq1  CACCCAGGAGGCTCCAGGGATCCAGAGTCAGCAGAGGTGACAGCCAGGAT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAGGAGGCTCCAGGGATCCAGAGTCAGCAGAGGTGACAGCCAGGAT  646

seq1  GGCTCTCTACCTGTCAGATTTGGACACTGGGCCTAAAGATGTATGTACTT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTCTACCTGTCAGATTTGGACACTGGGCCTAAAGATGTATGTACTT  696

seq1  CTGGGAGGCCTTGAGCAGGGGAAGCAGGGTCTTACTGTGTAGCCCAGGCA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGGCCTTGAGCAGGGGAAGCAGGGTCTTACTGTGTAGCCCAGGCA  746

seq1  TAGCAGCCTCCTACATGGCTAGGAGTGCCGCTTTGCCCAACTTTATACTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGCCTCCTACATGGCTAGGAGTGCCGCTTTGCCCAACTTTATACTT  796

seq1  TTAATATTGGTTTGAGATCGGGGGTCTCAATCCTGGCTGGTACGTTTCCT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATTGGTTTGAGATCGGGGGTCTCAATCCTGGCTGGTACGTTTCCT  846

seq1  GCTATGGCAGAGTCTGCGGTAGTCAGACTCTTCTAGAACAGATGGGATCT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGGCAGAGTCTGCGGTAGTCAGACTCTTCTAGAACAGATGGGATCT  896

seq1  ATGAAGCTGGTTTGATTGTTGGGTCGTCAGCAGACATGGCTATATCTAGT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGCTGGTTTGATTGTTGGGTCGTCAGCAGACATGGCTATATCTAGT  946

seq1  CATGTATCTGTCCCAGACTTTCAGTCTGTTTGTCTTTCTCTATCCTGGCT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATCTGTCCCAGACTTTCAGTCTGTTTGTCTTTCTCTATCCTGGCT  996

seq1  TCCTTCTCAGACAGAACTTAGCAATAGACGTTTCCTATTTCTCTGTAATC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTCAGACAGAACTTAGCAATAGACGTTTCCTATTTCTCTGTAATC  1046

seq1  CCAGGCCAAACCCCAGAAAGGACAATGTTGTCCTTGTTCCAGCTGAGGTC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCCAAACCCCAGAAAGGACAATGTTGTCCTTGTTCCAGCTGAGGTC  1096

seq1  CTTCTGTCCTTCTGGCTTAGAAAATGGAATTC  1126
      ||||||||||||||||||||||||||||||||
seq2  CTTCTGTCCTTCTGGCTTAGAAAATGGAATTC  1128