BAC Information

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BAC

Clone NameB6Ng01-184H15
Chromosome17 (Build37)
Map Location 24,903,231 - 25,070,336
singlet/doubletdoublet
Overlap gene4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3
Upstream gene2810417J12Rik, LOC100042865, Srrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2, LOC620233, Dcpp3, Sbp, Sbpl, Tmprss8, Prss22, LOC100042414, LOC383225, Prss27, Kctd5, Pdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik, Ccnf, Abca17, Abca3, Rnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26, Pkd1, Tsc2, Nthl1, Slc9a3r2, Npw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6
Downstream geneHn1l, Cramp1l, Ift140, BC054438, Telo2, 1110018H23Rik, Clcn7, Gm317, BC003965, Unkl, Gnptg, 0610007P22Rik, Ube2i, Prss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h, Tekt4, Sstr5, LOC100042580, Sox8, Tmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-184H15.bB6Ng01-184H15.g
ACCGA009841GA009842
length3341,163
definitionB6Ng01-184H15.b B6Ng01-184H15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,070,003 - 25,070,336)(24,903,231 - 24,904,366)
sequence
tcattgggctgagaagaggacagctgggaaatccctagtgctcggaagtc
agctgtgctgttggccacaagactgaacctttgatcctggccttcatcgt
ttaatctttcattttggggggaaaggggtaccaaggtctcattggtgtgc
acagactgcacatgcttagtgtccagtttgattttcagcactcatgtaag
tcccggaagccttgcccctgctttggagttctcacagagtgatcttgttc
tctgcttttctctgcctcatccccaggtgactgttctctttaactttcat
cttctagaactttaactaagctggaggggggggg
gaattccattcctcataagggagcagctcccaggcaggcctcgctgatga
gatgtgttcttcaaagggagggagtctccattctggagaggtgaaaaggt
tccaggacttgcagcggccatgctggagcgctagcgtgagtgtactaagt
gcagtgtgactatcgcctgtataaaagtaaataaaaggagcagaaggtgg
tggagaggaatcttctggccctgcaggaagcaatccgctgactgaggact
gggggaggggcaccaggcagctcctatgagctgaaagaggctcaggacta
tcagctatcaggtacaaagggacgcagcagggcttatgatacaagggatc
aaattcttccctcgactgagggagttttgaagagagccacaagtctcaga
gtcatagcctggccaactggattgcagccttgtgaaacccgaggcagaga
gcattgctcagccatccagaactcatgacctcggcaacctgggagagcaa
atgggatctggattgaactgccgaaattctggtcatttgttaaacagcac
agaaaataaaacaatagaataagtcaaccagggaagagtgttctggaaaa
acgagcaagtcttcagcgatgaggtatggagagcaatccggaaagtcttg
gatggtgaatcctttcataacggtagctttcgctatataatgaacagctc
tcccagaccactgggccccaaatgccccccacaacactgggaaagcaagt
atctcttctctgtcctactgtaaacataaattatttaagacgagggttgg
gtggactgggaagagatctgaagggtctttcagaggcctctgggcataca
ttcatatgcgcgcacacacacacacacacacacacacacgcacacacaca
cacagcacacacggagccctgctggctgggaaggtagggtgttgaagtgc
agcagtgcctaaaggataagggctggggtcaacagctccaacagcaagag
cttgcttgtggtccaacttgaacataaaactcctgaccttcagcaccaac
caccaagaaaaaaaaaagatggaagctcctctgagtgtatcttcacaaac
aacccaacgagccaacccacaagacagcacccctttgtctcaaggtgtgt
gaatgtcaccatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_25070003_25070336
seq2: B6Ng01-184H15.b_48_381 (reverse)

seq1  CCCCCCCCCTCCAGCTTAGTTAAAGTTCTAGAAGATGAAAGTTAAAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCTCCAGCTTAGTTAAAGTTCTAGAAGATGAAAGTTAAAGAGA  50

seq1  ACAGTCACCTGGGGATGAGGCAGAGAAAAGCAGAGAACAAGATCACTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCACCTGGGGATGAGGCAGAGAAAAGCAGAGAACAAGATCACTCTG  100

seq1  TGAGAACTCCAAAGCAGGGGCAAGGCTTCCGGGACTTACATGAGTGCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACTCCAAAGCAGGGGCAAGGCTTCCGGGACTTACATGAGTGCTGA  150

seq1  AAATCAAACTGGACACTAAGCATGTGCAGTCTGTGCACACCAATGAGACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAACTGGACACTAAGCATGTGCAGTCTGTGCACACCAATGAGACC  200

seq1  TTGGTACCCCTTTCCCCCCAAAATGAAAGATTAAACGATGAAGGCCAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTACCCCTTTCCCCCCAAAATGAAAGATTAAACGATGAAGGCCAGGA  250

seq1  TCAAAGGTTCAGTCTTGTGGCCAACAGCACAGCTGACTTCCGAGCACTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGTTCAGTCTTGTGGCCAACAGCACAGCTGACTTCCGAGCACTAG  300

seq1  GGATTTCCCAGCTGTCCTCTTCTCAGCCCAATGA  334
      ||||||||||||||||||||||||||||||||||
seq2  GGATTTCCCAGCTGTCCTCTTCTCAGCCCAATGA  334

seq1: chr17_24903231_24904366
seq2: B6Ng01-184H15.g_64_1226

seq1  GAATTCCATTCCTCATAAGGGAGCAGCTCCCAGGCAGGCCTCGCTGATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTCCTCATAAGGGAGCAGCTCCCAGGCAGGCCTCGCTGATGA  50

seq1  GATGTGTTCTTCAAAGGGAGGGAGTCTCCATTCTGGAGAGGTGAAAAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGTTCTTCAAAGGGAGGGAGTCTCCATTCTGGAGAGGTGAAAAGGT  100

seq1  TCCAGGACTTGCAGCGGCCATGCTGGAGCGCTAGCGTGAGTGTACTAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGACTTGCAGCGGCCATGCTGGAGCGCTAGCGTGAGTGTACTAAGT  150

seq1  GCAGTGTGACTATCGCCTGTATAAAAGTAAATAAAAGGAGCAGAAGGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGTGACTATCGCCTGTATAAAAGTAAATAAAAGGAGCAGAAGGTGG  200

seq1  TGGAGAGGAATCTTCTGGCCCTGCAGGAAGCAATCCGCTGACTGAGGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGGAATCTTCTGGCCCTGCAGGAAGCAATCCGCTGACTGAGGACT  250

seq1  GGGGGAGGGGCACCAGGCAGCTCCTATGAGCTGAAAGAGGCTCAGGACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAGGGGCACCAGGCAGCTCCTATGAGCTGAAAGAGGCTCAGGACTA  300

seq1  TCAGCTATCAGGTACAAAGGGACGCAGCAGGGCTTATGATACAAGGGATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTATCAGGTACAAAGGGACGCAGCAGGGCTTATGATACAAGGGATC  350

seq1  AAATTCTTCCCTCGACTGAGGGAGTTTTGAAGAGAGCCACAAGTCTCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTTCCCTCGACTGAGGGAGTTTTGAAGAGAGCCACAAGTCTCAGA  400

seq1  GTCATAGCCTGGCCAACTGGATTGCAGCCTTGTGAAACCCGAGGCAGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAGCCTGGCCAACTGGATTGCAGCCTTGTGAAACCCGAGGCAGAGA  450

seq1  GCATTGCTCAGCCATCCAGAACTCATGACCTCGGCAACCTGGGAGAGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGCTCAGCCATCCAGAACTCATGACCTCGGCAACCTGGGAGAGCAA  500

seq1  ATGGGATCTGGATTGAACTGCCGAAATTCTGGTCATTTGTTAAACAGCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGATCTGGATTGAACTGCCGAAATTCTGGTCATTTGTTAAACAGCAC  550

seq1  AGAAAATAAAACAATAGAATAAGTCAACCAGGGAAGAGTGTTCTGGAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATAAAACAATAGAATAAGTCAACCAGGGAAGAGTGTTCTGGAAAA  600

seq1  ACGAGCAAGTCTTCAGCGATGAGGTATGGAGAGCAATCCGGAAAGTCTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGCAAGTCTTCAGCGATGAGGTATGGAGAGCAATCCGGAAAGTCTTG  650

seq1  GATGGTGAATCCTTTCATAACGGTAGCTTTCGCTATATAATGAACAGCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTGAATCCTTTCATAACGGTAGCTTTCGCTATATAATGAACAGCTC  700

seq1  TCCCAGACCACTGGGCCCCAAATGCCCCCCACAACACTGGGAAAGCAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGACCACTGGGCCCCAAATGCCCCCCACAACACTGGGAAAGCAAGT  750

seq1  ATCTCTTCTCTGTCCTACTGTAAACATAAATTATTTAAGACGAGGGTTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTCTCTGTCCTACTGTAAACATAAATTATTTAAGACGAGGGTTGG  800

seq1  GTGGACTGGGAAGAGATCTGAAGGGTCTTTCAGAGGCCTCT-GGCATACA  849
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GTGGACTGGGAAGAGATCTGAAGGGTCTTTCAGAGGCCTCTGGGCATACA  850

seq1  TTCATATGCGCGCACACACACACACACACACACACACACACACACACACA  899
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTCATATGCGCGCACACACACACACACACACACACACACGCACACACACA  900

seq1  CACA-CACACACGGAG-CCTGCTGGCT-GGAAGGTAGGGTGTTGAAGTGC  946
      |||| ||||||||||| |||||||||| ||||||||||||||||||||||
seq2  CACAGCACACACGGAGCCCTGCTGGCTGGGAAGGTAGGGTGTTGAAGTGC  950

seq1  AGCAGTGC--TAAGGATAAGGGCTGGGGTC-ACAGCTCC-ACAGC-AGAG  991
      ||||||||   ||||||||||||||||||| |||||||| ||||| ||||
seq2  AGCAGTGCCTAAAGGATAAGGGCTGGGGTCAACAGCTCCAACAGCAAGAG  1000

seq1  C-TGC-TGTG--TCAACTTG-ACATAAAAC-CCTGACC-TCAGCACCAAC  1034
      | ||| ||||   ||||||| ||||||||| ||||||| |||||||||||
seq2  CTTGCTTGTGGTCCAACTTGAACATAAAACTCCTGACCTTCAGCACCAAC  1050

seq1  --ACAAGAAAAAAAAAAGATGAAGGCTACTCTGAGTG-ATCTCAACAAAC  1081
         |||||||||||||||||| | ||| ||||||||| ||||  ||||||
seq2  CACCAAGAAAAAAAAAAGATGGAAGCTCCTCTGAGTGTATCTTCACAAAC  1100

seq1  AACCAACAGAGCCAACCCAC-AGACAGCACCC--TTG-CTC-AGGTGTG-  1125
      |||| |  |||||||||||| |||||||||||  ||| ||| ||||||| 
seq2  AACCCAACGAGCCAACCCACAAGACAGCACCCCTTTGTCTCAAGGTGTGT  1150

seq1  --ATGTCACCATG  1136
        |||||||||||
seq2  GAATGTCACCATG  1163