BAC Information

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BAC

Clone NameB6Ng01-184J10
Chromosome17 (Build37)
Map Location 27,186,496 - 27,323,866
singlet/doubletdoublet
Overlap geneItpr3, 2900010M23Rik, Ihpk3
Upstream geneRab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1, Pdia2, Arhgdig, Rgs11, Itfg3, LOC100042643, Luc7l, EG383229, EG240055, C230078M08Rik, Dusp1, EG666668, Ergic1, Atp6v0e, A930001N09Rik, Bnip1, Nkx2-5, Kifc1, Phf1, Cuta, Syngap1, Zbtb9, Bak1, Ggnbp1
Downstream geneLemd2, LOC100042713, ENSMUSG00000073430, Grm4, LOC677010, Hmga1, AI413582, Nudt3, Rps10, Pacsin1, Spdef, LOC100042744, D17Wsu92e, EG666682, Snrpc, F830021D11Rik, Taf11, Anks1, Tcp11, 4930526A20Rik, Scube3, LOC100042764, Zfp523
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-184J10.bB6Ng01-184J10.g
ACCGA009925GA009926
length315985
definitionB6Ng01-184J10.b B6Ng01-184J10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,186,496 - 27,186,810)(27,322,890 - 27,323,866)
sequence
aggaccttcggaagaacagtcagtgctcttaaccgctgagcaccagccct
gtggggctcaaaagctccatccttggccattggtacaacccaaatcccat
ggttagattgcaatgtgtgtttgtgtgcctctgcatgtatgtgtgattca
tgtacatgtgtatttgagtacgtgtgtgttttgtgtgcatgtatatattg
tatgtatttttacgtacacatgtatttgtgtgtttgtgtgcatgtgttca
tgtgtatatttttgcatgtatgtatatatttgtatatttgtgtgtatgtg
tgtgtatatgtgtat
gaattccctttgcctcgttctcctggcaattaagcccttctccgtaaatg
aaatgatttggttttcatgggactaatttaagcacactggaaggaccact
gaactttctgattgcaaatactagcatgtgcaaacagagctggcattgga
gcctgcctggcgagggagccccgcccaggagccagcagccttggaaatgg
gcctgctctgttcctctaagcccctttgtgaggctgaccctccacccttt
gccaaccccatctcctcaccctgagtggaggaggctgggctagctccatg
ggacactcagggtgctgactactgaagacctcactcttggccacccctac
tcttctgtgacagccgaaggctcttccctctgccttgaacctgggctttg
agcttccctgtgactgctttgatcagtgtgatatggccagaaggacactg
gctggttcccatctaagatcccaagaagccctgtgtctttagtaattttg
ctcatgagcctgaaccctatagaaagacatcattgactttctaggacaga
gctgaaggcagagatccgccacctgtctccgtgagcccaggcgtcccagc
tgacacacaggagtgtgccagtttctttcagtgtgaacaggtgagtcaac
tctgaaggctgggccagaatggagccacctggagatgactgagttcatct
taagtcccttggggcctgtttttgttacaacatttcaatttgaattgaag
accactggggatgtagtgcagttggaggttggagaatgcctgagccctca
ctaatctgagtccccatccccagcaccatgtgattggtcatgggagctgc
aggcctgtagttacctccatttaggaagtggagagaggaggatcaaaagt
tcaaggtccggggctggaagagatggtccaccggttaagaaacactgact
ggtccttccaaaggtctgaagttccaaatcccagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_27186496_27186810
seq2: B6Ng01-184J10.b_48_362

seq1  AGGACCTTCGGAAGAACAGTCAGTGCTCTTAACCGCTGAGCACCAGCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCTTCGGAAGAACAGTCAGTGCTCTTAACCGCTGAGCACCAGCCCT  50

seq1  GTGGGGCTCAAAAGCTCCATCCTTGGCCATTGGTACAACCCAAATCCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGCTCAAAAGCTCCATCCTTGGCCATTGGTACAACCCAAATCCCAT  100

seq1  GGTTAGATTGCAATGTGTGTTTGTGTGCCTCTGCATGTATGTGTGATTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGATTGCAATGTGTGTTTGTGTGCCTCTGCATGTATGTGTGATTCA  150

seq1  TGTACATGTGTATTTGAGTACGTGTGTGTTTTGTGTGCATGTATATATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATGTGTATTTGAGTACGTGTGTGTTTTGTGTGCATGTATATATTG  200

seq1  TATGTATTTTTACGTACACATGTATTTGTGTGTTTGTGTGCATGTGTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATTTTTACGTACACATGTATTTGTGTGTTTGTGTGCATGTGTTCA  250

seq1  TGTGTATATTTTTGCATGTATGTATATATTTGTATATTTGTGTGTATGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATATTTTTGCATGTATGTATATATTTGTATATTTGTGTGTATGTG  300

seq1  TGTGTATATGTGTAT  315
      |||||||||||||||
seq2  TGTGTATATGTGTAT  315

seq1: chr17_27322890_27323866
seq2: B6Ng01-184J10.g_66_1050 (reverse)

seq1  GCTGGGATTT-GAACTCAGGACCTTTGGAA-GAGCAGTCAGTG-CTCTTA  47
      |||||||||| |||||   ||||||||||| || |||||||||  |||||
seq2  GCTGGGATTTGGAACTTCAGACCTTTGGAAGGACCAGTCAGTGTTTCTTA  50

seq1  ACCGCTGAGCCATCTC-TCCAGCCCC-GACCTTGAACTTCTGATCCTCCT  95
      |||| ||  ||||||| ||||||||| |||||||||||| ||||||||||
seq2  ACCGGTGGACCATCTCTTCCAGCCCCGGACCTTGAACTTTTGATCCTCCT  100

seq1  CTCTCCACCTCCTAAATGGA-GTAACTACAGGCCTGCAGCT-CCATGACC  143
      |||||||| ||||||||||| |||||||||||||||||||| ||||||||
seq2  CTCTCCACTTCCTAAATGGAGGTAACTACAGGCCTGCAGCTCCCATGACC  150

seq1  AATCACATGGTGCTGGGGAT-GGGACTCAGATTAGTGAGGGCTCAGGCAT  192
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AATCACATGGTGCTGGGGATGGGGACTCAGATTAGTGAGGGCTCAGGCAT  200

seq1  TCTCCAACCTCCAACTGCACTACATCCCCAGTGGTCTTCAATTCAAATTG  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAACCTCCAACTGCACTACATCCCCAGTGGTCTTCAATTCAAATTG  250

seq1  AAATGTTGTAACAAAAACAGGCCCCAAGGGACTTAAGATGAACTCAGTCA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTGTAACAAAAACAGGCCCCAAGGGACTTAAGATGAACTCAGTCA  300

seq1  TCTCCAGGTGGCTCCATTCTGGCCCAGCCTTCAGAGTTGACTCACCTGTT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGGTGGCTCCATTCTGGCCCAGCCTTCAGAGTTGACTCACCTGTT  350

seq1  CACACTGAAAGAAACTGGCACACTCCTGTGTGTCAGCTGGGACGCCTGGG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGAAAGAAACTGGCACACTCCTGTGTGTCAGCTGGGACGCCTGGG  400

seq1  CTCACGGAGACAGGTGGCGGATCTCTGCCTTCAGCTCTGTCCTAGAAAGT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACGGAGACAGGTGGCGGATCTCTGCCTTCAGCTCTGTCCTAGAAAGT  450

seq1  CAATGATGTCTTTCTATAGGGTTCAGGCTCATGAGCAAAATTACTAAAGA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGATGTCTTTCTATAGGGTTCAGGCTCATGAGCAAAATTACTAAAGA  500

seq1  CACAGGGCTTCTTGGGATCTTAGATGGGAACCAGCCAGTGTCCTTCTGGC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGGCTTCTTGGGATCTTAGATGGGAACCAGCCAGTGTCCTTCTGGC  550

seq1  CATATCACACTGATCAAAGCAGTCACAGGGAAGCTCAAAGCCCAGGTTCA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCACACTGATCAAAGCAGTCACAGGGAAGCTCAAAGCCCAGGTTCA  600

seq1  AGGCAGAGGGAAGAGCCTTCGGCTGTCACAGAAGAGTAGGGGTGGCCAAG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGGGAAGAGCCTTCGGCTGTCACAGAAGAGTAGGGGTGGCCAAG  650

seq1  AGTGAGGTCTTCAGTAGTCAGCACCCTGAGTGTCCCATGGAGCTAGCCCA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGGTCTTCAGTAGTCAGCACCCTGAGTGTCCCATGGAGCTAGCCCA  700

seq1  GCCTCCTCCACTCAGGGTGAGGAGATGGGGTTGGCAAAGGGTGGAGGGTC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCTCCACTCAGGGTGAGGAGATGGGGTTGGCAAAGGGTGGAGGGTC  750

seq1  AGCCTCACAAAGGGGCTTAGAGGAACAGAGCAGGCCCATTTCCAAGGCTG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCACAAAGGGGCTTAGAGGAACAGAGCAGGCCCATTTCCAAGGCTG  800

seq1  CTGGCTCCTGGGCGGGGCTCCCTCGCCAGGCAGGCTCCAATGCCAGCTCT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTCCTGGGCGGGGCTCCCTCGCCAGGCAGGCTCCAATGCCAGCTCT  850

seq1  GTTTGCACATGCTAGTATTTGCAATCAGAAAGTTCAGTGGTCCTTCCAGT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCACATGCTAGTATTTGCAATCAGAAAGTTCAGTGGTCCTTCCAGT  900

seq1  GTGCTTAAATTAGTCCCATGAAAACCAAATCATTTCATTTACGGAGAAGG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTAAATTAGTCCCATGAAAACCAAATCATTTCATTTACGGAGAAGG  950

seq1  GCTTAATTGCCAGGAGAACGAGGCAAAGGGAATTC  977
      |||||||||||||||||||||||||||||||||||
seq2  GCTTAATTGCCAGGAGAACGAGGCAAAGGGAATTC  985