BAC Information

Click to search

BAC

Clone NameB6Ng01-187M04
Chromosome17 (Build37)
Map Location 92,250,948 - 92,389,270
singlet/doubletdoublet
Overlap genenone
Upstream geneNrxn1, EG668871, LOC668872, LOC627235, LOC100043741, LOC100043742
Downstream geneEG640442, LOC627395, LOC676141, LOC668877, LOC100043746, LOC100043747
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-187M04.bB6Ng01-187M04.g
ACCGA012250GA012251
length1,1091,092
definitionB6Ng01-187M04.b B6Ng01-187M04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,250,948 - 92,252,063)(92,388,163 - 92,389,270)
sequence
gaattcatagacatactagatttaatttgccaccatctttttctaattat
aatactaattttagctctgaattttatttatttatttatttatttattta
tttatttatttatttatttatttaatttgccagcaaggacttgcctgata
cagccttgtagaggaaatttaatccagtaacatgggtgctttgggtgtgc
atttatgacagttttaccaggagagttttacaaagacaggtagcaaagag
accaaactagacacaggtgaagacagaacaagccagagaacaagaatgag
ccagaaaattataaaatattgcaaaatttagtatgaaatgaagcagggta
atttagttagaagccctaacaagttgaattaaattaaatcagtaaacttg
tatgtaggctagaattttccaggactagggcaagggatagttaaaacaaa
gaaatgttctgggtttagcacaagctatacattgacacagcttgagtaca
gctttcctctcatcccattatctgaggaaataaagtgatataaaaaatta
tatcatcattttcacaacctagttgggtaagtagtctatctcattttttt
ccaaattgtaatggacattctcagtctgtctttaccctcttgaggaattt
agcctcccccctacatgagcaaaatcactaatgcttttatgagataaaat
atattaaagaatgactttttctgtttatccaaaagtgatatacaaatatt
ccccattggccaaaaaaatacaaagaactaaaatatgtgattctccatac
acgatactatctagtacttttgtgctacacttatattctagtagctgata
tgctgaccagtaggactccatcagcatacacaaataaataaataattgag
ttgacttggttaaatgtcatgattgatactatgatgtttttcttgttgtt
tgttgcaattttagttttgttttcacccagcacttttggtgctaggccaa
cacttatcttactaacagcatatcttttcattaatttaatcttttagaat
aaagtctgattatcaagtttgcatcactaatgggcattaaacatgtactg
gatgttacc
gaattctgtcatcttgggccacataaacatgtcaacccaatcatggatac
acagcagtactctgtttttaaaaacacgacaatcaataaaagcaaagtga
taaaatatgttctgcatttctatgttacttgctaatatcagtgataatat
cacttactggactatgccatttcttctacaatacttccatctaaaacaca
tctgctgtttgttctatttgccctctcccagtatggccttgtagggggtc
atcacactgctcgtaaaaccctgagctgtcaaaatgaaaaacagttaggt
tttgtctcaaaggcacagagaagccatagaattagacatcagtgttaaac
aggtgctgggaaatgtctacgattcccaaaagtctacacaatgggatata
ggttcaaggtaatatgtcaactcagaaatgtccaaggagagttgggctga
agaagagtcttatgggaatatttcagaaatattttctttaaggaacacaa
attgaaaatataatacactatttcttatccactaaaatgatgatactaaa
aaaataatagttacattactggattctgtgcagaattatagattactcta
agttttttatgaataacagaaattatttttcatggttctagagatagtga
tcttcatagtaagaatactaccatttggtctggtgagaaattttttgagt
gattttatgtcagaaaacaaaagcatgatgtgacagtctagtcagataaa
gttgttgtgaaatctccaggttagcactgaaaagaacattgttatttgag
gactacctcataaaaatccctggctgttaatactatcacattagcaatac
ctcagttttaaaaggattaagtaccactttgattttgtcagtgtcaaaag
cattcagcccgttccaacaggaaattatagctattggtaaaatgtgttca
aactatgtctcttccatattgtaaatcagatgggaaatataagcttcttt
aaagatagttagtgtactccacaaaattaactaagtactattagcctaca
atctgctctacagtgagacgttgtgctggcttcactgagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_92250948_92252063
seq2: B6Ng01-187M04.b_46_1154

seq1  GAATTCATAGACATACTAGATTTAATTTGCCACCATCTTTTTCTAATTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGACATACTAGATTTAATTTGCCACCATCTTTTTCTAATTAT  50

seq1  AATACTAATTTTAGCTCTGAATTTTATTTATTTATTTATTTATTTATTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTAATTTTAGCTCTGAATTTTATTTATTTATTTATTTATTTATTTA  100

seq1  TTTATTTATTTATTTATTTATTTAATTTGCCAGCAAGGACTTGCCTGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATTTATTTATTTATTTAATTTGCCAGCAAGGACTTGCCTGATA  150

seq1  CAGCCTTGTAGAGGAAATTTAATCCAGTAACATGGGTGCTTTGGGTGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTGTAGAGGAAATTTAATCCAGTAACATGGGTGCTTTGGGTGTGC  200

seq1  ATTTATGACAGTTTTACCAGGAGAGTTTTACAAAGACAGGTAGCAAAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGACAGTTTTACCAGGAGAGTTTTACAAAGACAGGTAGCAAAGAG  250

seq1  ACCAAACTAGACACAGGTGAAGACAGAACAAGCCAGAGAACAAGAATGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAACTAGACACAGGTGAAGACAGAACAAGCCAGAGAACAAGAATGAG  300

seq1  CCAGAAAATTATAAAATATTGCAAAATTTAGTATGAAATGAAGCAGGGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAAATTATAAAATATTGCAAAATTTAGTATGAAATGAAGCAGGGTA  350

seq1  ATTTAGTTAGAAGCCCTAACAAGTTGAATTAAATTAAATCAGTAAACTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGTTAGAAGCCCTAACAAGTTGAATTAAATTAAATCAGTAAACTTG  400

seq1  TATGTAGGCTAGAATTTTCCAGGACTAGGGCAAGGGATAGTTAAAACAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAGGCTAGAATTTTCCAGGACTAGGGCAAGGGATAGTTAAAACAAA  450

seq1  GAAATGTTCTGGGTTTAGCACAAGCTATACATTGACACAGCTTGAGTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTTCTGGGTTTAGCACAAGCTATACATTGACACAGCTTGAGTACA  500

seq1  GCTTTCCTCTCATCCCATTATCTGAGGAAATAAAGTGATATAAAAAATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCCTCTCATCCCATTATCTGAGGAAATAAAGTGATATAAAAAATTA  550

seq1  TATCATCATTTTCACAACCTAGTTGGGTAAGTAGTCTATCTCATTTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATCATTTTCACAACCTAGTTGGGTAAGTAGTCTATCTCATTTTTTT  600

seq1  CCAAATTGTAATGGACATTCTCAGTCTGTCTTTACCCTCTTGAGGAATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATTGTAATGGACATTCTCAGTCTGTCTTTACCCTCTTGAGGAATTT  650

seq1  AGCCTCCCCCCTACATGAGCAAAATCACTAATGCTTTTATGAGATAAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCCCCCCTACATGAGCAAAATCACTAATGCTTTTATGAGATAAAAT  700

seq1  ATATTAAAGAATGACTTTTTCTGTTTATCCAAAAGTGATATACAAATATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAAGAATGACTTTTTCTGTTTATCCAAAAGTGATATACAAATATT  750

seq1  CCCCATTGGCCAAAAAAATACAAAGAACTAAAATATGTGATTCTCCATAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATTGGCCAAAAAAATACAAAGAACTAAAATATGTGATTCTCCATAC  800

seq1  ACGATACTATCTAGTACTTTTGTGCTACACTTATATTCTAGTAGCTGATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATACTATCTAGTACTTTTGTGCTACACTTATATTCTAGTAGCTGATA  850

seq1  TGCTGACCAGTAGGACTCCATCAGCATACACAAATAAATAAATAATTGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGACCAGTAGGACTCCATCAGCATACACAAATAAATAAATAATTGAG  900

seq1  TTGACTTGGTTAAATGTCATGATTGATACTATGATGTTTTTCTTGTTGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTTGGTTAAATGTCATGATTGATACTATGATGTTTTTCTTGTTGTT  950

seq1  TGTTTGCAATTTTAGTTTTGTTTTCACCCAGCACTTTTGGTGCTAGGCCA  1000
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TG-TTGCAATTTTAGTTTTGTTTTCACCCAGCACTTTTGGTGCTAGGCCA  999

seq1  ACACTTATC-TACTAACAGCAATATCCTTTTCATTAATTTAATCTTTTAG  1049
      ||||||||| |||||||||| |||| ||||||||||||||||||||||||
seq2  ACACTTATCTTACTAACAGC-ATAT-CTTTTCATTAATTTAATCTTTTAG  1047

seq1  AATAAAGTCTGATTATCAAAGTTTTGGCATCCACTAAATGGCATTAAAAC  1099
      ||||||||||||||||| ||||||  |||| ||||||  |||||| ||||
seq2  AATAAAGTCTGATTATC-AAGTTT--GCAT-CACTAATGGGCATT-AAAC  1092

seq1  ATGTACTTGATGGTACC  1116
      ||||||| |||| ||||
seq2  ATGTACTGGATGTTACC  1109

seq1: chr17_92388163_92389270
seq2: B6Ng01-187M04.g_63_1154 (reverse)

seq1  TTTCTCAAGTGAAGGCAGCACAACGTTCTCACTGTAGGAGCAGAATTTGT  50
      |||||| ||||||| |||||||||| |||||||||| |||||||  ||||
seq2  TTTCTC-AGTGAAGCCAGCACAACG-TCTCACTGTA-GAGCAGA--TTGT  45

seq1  AGGCTATTAAGTAACTTTAGGTTTAATTTTGTGAGTTACACCTAAACTAT  100
      |||||| | ||||   ||||  |||||||||||   |||||   ||||||
seq2  AGGCTAAT-AGTA--CTTAG--TTAATTTTGTGGAGTACAC--TAACTAT  88

seq1  CTTTAAAGAAGCCTTATTATTTCCCATTCTGATTTACAATATGGAAGAGA  150
      ||||||||||| |||| ||||||||| |||||||||||||||||||||||
seq2  CTTTAAAGAAG-CTTA-TATTTCCCA-TCTGATTTACAATATGGAAGAGA  135

seq1  CATAGTTTGAACACATTTTTACCAATAGCTATAATTTCCTGTTGGAACGG  200
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CATAGTTTGAACACA-TTTTACCAATAGCTATAATTTCCTGTTGGAACGG  184

seq1  GCTGAATGCTTTTGACACTGACAAAATCAAAGTGGTACTTAATCCTTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAATGCTTTTGACACTGACAAAATCAAAGTGGTACTTAATCCTTTTA  234

seq1  AAACTGAGGTATTGCTAATGTGATAGTATTAACAGCCAGGGATTTTTATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGAGGTATTGCTAATGTGATAGTATTAACAGCCAGGGATTTTTATG  284

seq1  AGGTAGTCCTCAAATAACAATGTTCTTTTCAGTGCTAACCTGGAGATTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGTCCTCAAATAACAATGTTCTTTTCAGTGCTAACCTGGAGATTTC  334

seq1  ACAACAACTTTATCTGACTAGACTGTCACATCATGCTTTTGTTTTCTGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAACTTTATCTGACTAGACTGTCACATCATGCTTTTGTTTTCTGAC  384

seq1  ATAAAATCACTCAAAAAATTTCTCACCAGACCAAATGGTAGTATTCTTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATCACTCAAAAAATTTCTCACCAGACCAAATGGTAGTATTCTTAC  434

seq1  TATGAAGATCACTATCTCTAGAACCATGAAAAATAATTTCTGTTATTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGATCACTATCTCTAGAACCATGAAAAATAATTTCTGTTATTCAT  484

seq1  AAAAAACTTAGAGTAATCTATAATTCTGCACAGAATCCAGTAATGTAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACTTAGAGTAATCTATAATTCTGCACAGAATCCAGTAATGTAACT  534

seq1  ATTATTTTTTTAGTATCATCATTTTAGTGGATAAGAAATAGTGTATTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTTTTAGTATCATCATTTTAGTGGATAAGAAATAGTGTATTATA  584

seq1  TTTTCAATTTGTGTTCCTTAAAGAAAATATTTCTGAAATATTCCCATAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAATTTGTGTTCCTTAAAGAAAATATTTCTGAAATATTCCCATAAG  634

seq1  ACTCTTCTTCAGCCCAACTCTCCTTGGACATTTCTGAGTTGACATATTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTCTTCAGCCCAACTCTCCTTGGACATTTCTGAGTTGACATATTAC  684

seq1  CTTGAACCTATATCCCATTGTGTAGACTTTTGGGAATCGTAGACATTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACCTATATCCCATTGTGTAGACTTTTGGGAATCGTAGACATTTCC  734

seq1  CAGCACCTGTTTAACACTGATGTCTAATTCTATGGCTTCTCTGTGCCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACCTGTTTAACACTGATGTCTAATTCTATGGCTTCTCTGTGCCTTT  784

seq1  GAGACAAAACCTAACTGTTTTTCATTTTGACAGCTCAGGGTTTTACGAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAAAACCTAACTGTTTTTCATTTTGACAGCTCAGGGTTTTACGAGC  834

seq1  AGTGTGATGACCCCCTACAAGGCCATACTGGGAGAGGGCAAATAGAACAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGATGACCCCCTACAAGGCCATACTGGGAGAGGGCAAATAGAACAA  884

seq1  ACAGCAGATGTGTTTTAGATGGAAGTATTGTAGAAGAAATGGCATAGTCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGATGTGTTTTAGATGGAAGTATTGTAGAAGAAATGGCATAGTCC  934

seq1  AGTAAGTGATATTATCACTGATATTAGCAAGTAACATAGAAATGCAGAAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGTGATATTATCACTGATATTAGCAAGTAACATAGAAATGCAGAAC  984

seq1  ATATTTTATCACTTTGCTTTTATTGATTGTCGTGTTTTTAAAAACAGAGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTATCACTTTGCTTTTATTGATTGTCGTGTTTTTAAAAACAGAGT  1034

seq1  ACTGCTGTGTATCCATGATTGGGTTGACATGTTTATGTGGCCCAAGATGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGTGTATCCATGATTGGGTTGACATGTTTATGTGGCCCAAGATGA  1084

seq1  CAGAATTC  1108
      ||||||||
seq2  CAGAATTC  1092