BAC Information

Click to search

BAC

Clone NameB6Ng01-188F03
Chromosome17 (Build37)
Map Location 20,806,026 - 20,806,929
singlet/doubletsinglet
Overlap genenone
Upstream geneEG224572, EG627618, EG627636, LOC100042273, LOC210465, LOC670534, EG627664, V2r7, LOC100041856, EG545190, Fpr-rs7, Fpr-rs6, EG627743, EG224576, V2r6, EG637720, EG665525, EG627805, V1re5, EG627814, EG381065, EG224582, Fpr-rs3, EG433073
Downstream geneV1re2, V1re6, LOC100041976, V1re3, V1re1, V1re8, V1re7, V1re4, LOC627884, Ppp2r1a, V1rf5, Zfp160, LOC627912, LOC435509, EG627924, 4933430A09, EG665654, EG665662, LOC665666, EG665669, V1rf1, V1rf2, V1rf4, V1rf3, A830058L05Rik, Zfp54, Zfp51, Zfp53, LOC100042508, Zfp52, BC049807
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188F03.bB6Ng01-188F03.g
ACCGA012648GA012649
length1,1091,192
definitionB6Ng01-188F03.b B6Ng01-188F03.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ggaattcagccatttcctctttaaagacctatagtattgtgatgagattg
tatttaatttccttgtgtttcagttgtgttaggatatcgagtgcttgctg
tagtggggtagctgtgctttggaggtttcatattgccctggcttttgttg
attatgttgtttccagagcctttagccacctggatattgtagtacctggg
tgttctttttgtagtaggtaacgggagttggtgaacctctattgttctgg
tatgggaagcctctgatggatatcctttggctgtatggttctggatctgc
aatcctgtatggttcaggagccttaggtctactgaatgtgagtagagaga
tgacaggaaaatggaggtcttcctagattaccaggctgctcagaggagct
tggcttggcccagagggatcagagagcaaggaagatggttagggaatggg
cagctgcctgtctggtttgggaatctgatggaggtataggagagacaatg
ggaaaattgaaatcccccctgggttatcaggctgctcagggcagcttggc
ttggcccatagggtcaaagagcagggaagatgggtggaggaaaggcagtt
tacctgtataattcagcaggtttttggaagtggaggaaaggtagtgggag
aattgatgtccctctgggatggcaggctgcttagggaaacttaacttggt
ccagacagcaaagcatatgacatttcctttatccatttctccatctagct
tgttccaaatttccagctattatgagtagagcagaaaagaaacatggttg
agcaaatgatattgtggtaggattaaacattttttttgagtatatgccca
agagtggtatagctgaccttgaggtagatcaatttatatttttctgaaga
acagtccttgtatattccactatgtctagagaagtttgtagtgccaccag
aatttatgcaaggtgatgtacttaatcatgcttttagccatacccttagc
catttgacaggtggaaaaggaattcttgagatttatttgaaaaatgtctt
aatacctgacagaagctacttgtaggttggaagttcgaactctaccaatg
ggaattttt
gaattctcacccgaggaataccgaaaggctgagaaacacctgaaaaaatg
ttcaacatccttaatcatcagagaaatgcaaatcaaaacaaccctgagat
tccatctcacacaagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcatggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggtggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atttatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccaaaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagccccaaacc
taggattcccaagatataaggtacaatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagaattgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaatgctgacaccattgcataccctagcaagattttattgaaa
ggacccagatgtagctatctcttgtgagactatgcacgggcctagcaaac
acagacgtggatgctcacagtcagctaatggatggatcacagggctccca
atggaggagctagagaaagaacccaaggagcttaaagggatctgcaaccc
tataggtgaacacattatgaactaaccagtaccccggagctcttgactct
agctgcattatgtaacaaaagatgcctatcgacatcactgaaagaagagg
tcaatgacacgtaaccttgtattgctcagtacaggctaacgcagtccaaa
gggaatggggtgtgtttagaggggaaagttcgccttttcacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_20806026_20806929
seq2: B6Ng01-188F03.b_249_1154

seq1  TCTTTTTGTAGTAGGTAACGGGAGTTGGTGAACCTCTATTGTTCTGGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTGTAGTAGGTAACGGGAGTTGGTGAACCTCTATTGTTCTGGTAT  50

seq1  GGGAAGCCTCTGATGGATATCCTTTGGCTGTATGGTTCTGGATCTGCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGCCTCTGATGGATATCCTTTGGCTGTATGGTTCTGGATCTGCAAT  100

seq1  CCTGTATGGTTCAGGAGCCTTAGGTCTACTGAATGTGAGTAGAGAGATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTATGGTTCAGGAGCCTTAGGTCTACTGAATGTGAGTAGAGAGATGA  150

seq1  CAGGAAAATGGAGGTCTTCCTAGATTACCAGGCTGCTCAGAGGAGCTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAAATGGAGGTCTTCCTAGATTACCAGGCTGCTCAGAGGAGCTTGG  200

seq1  CTTGGCCCAGAGGGATCAGAGAGCAAGGAAGATGGTTAGGGAATGGGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCCCAGAGGGATCAGAGAGCAAGGAAGATGGTTAGGGAATGGGCAG  250

seq1  CTGCCTGTCTGGTTTGGGAATCTGATGGAGGTATAGGAGAGACAATGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGTCTGGTTTGGGAATCTGATGGAGGTATAGGAGAGACAATGGGA  300

seq1  AAATTGAAATCCCCCCTGGGTTATCAGGCTGCTCAGGGCAGCTTGGCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGAAATCCCCCCTGGGTTATCAGGCTGCTCAGGGCAGCTTGGCTTG  350

seq1  GCCCATAGGGTCAAAGAGCAGGGAAGATGGGTGGAGGAAAGGCAGTTTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATAGGGTCAAAGAGCAGGGAAGATGGGTGGAGGAAAGGCAGTTTAC  400

seq1  CTGTATAATTCAGCAGGTTTTTGGAAGTGGAGGAAAGGTAGTGGGAGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATAATTCAGCAGGTTTTTGGAAGTGGAGGAAAGGTAGTGGGAGAAT  450

seq1  TGATGTCCCTCTGGGATGGCAGGCTGCTTAGGGAAACTTAACTTGGTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTCCCTCTGGGATGGCAGGCTGCTTAGGGAAACTTAACTTGGTCCA  500

seq1  GACAGCAAAGCATATGACATTTCCTTTATCCATTTCTCCATCTAGCTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCAAAGCATATGACATTTCCTTTATCCATTTCTCCATCTAGCTTGT  550

seq1  TCCAAATTTCCAGCTATTATGAGTAGAGCAG-AAAGAAACATGGTTGAGC  599
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCCAAATTTCCAGCTATTATGAGTAGAGCAGAAAAGAAACATGGTTGAGC  600

seq1  AAATGATATTGTGGTAGGATTAAACA-TTTTTTTGAGTATATGCCCAAGA  648
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AAATGATATTGTGGTAGGATTAAACATTTTTTTTGAGTATATGCCCAAGA  650

seq1  GTGGTATAGCTGACCTTGAGGTAGATCAATTTATATTTTTCTGAAGAACA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTATAGCTGACCTTGAGGTAGATCAATTTATATTTTTCTGAAGAACA  700

seq1  GTCCTTGTATATTCCACTATGTCTAGAGAAGTTTGTAGTGCCACCAGAA-  747
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTCCTTGTATATTCCACTATGTCTAGAGAAGTTTGTAGTGCCACCAGAAT  750

seq1  TTATGC-AGGTGATGTACTTAATCATGCTTTTAGCCATACCCTTAGCCAT  796
      |||||| |||||||||||||||||||||||||||||||||||||||||| 
seq2  TTATGCAAGGTGATGTACTTAATCATGCTTTTAGCCATACCCTTAGCCA-  799

seq1  TTTGACAGGTGGAAAAGGAATTCTTGAAGAATTAATTGAAAAAATGTCTT  846
      |||||||||||||||||||||||||| ||| ||| ||| |||||||||||
seq2  TTTGACAGGTGGAAAAGGAATTCTTG-AGATTTATTTG-AAAAATGTCTT  847

seq1  AATACCTGACAGAAGCTACTTGTATGTT-GAAG-TCAAACTCTACCAATT  894
      |||||||||||||||||||||||| ||| |||| || |||||||||||| 
seq2  AATACCTGACAGAAGCTACTTGTAGGTTGGAAGTTCGAACTCTACCAATG  897

seq1  GGGATTTTTT  904
      || |||||| 
seq2  GGAATTTTT-  906