BAC Information

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BAC

Clone NameB6Ng01-189I06
Chromosome17 (Build37)
Map Location 56,789,789 - 56,790,608
singlet/doubletsinglet
Overlap geneTmem146
Upstream genePot1b, Emr4, Zfp119, BC011426, EG433125, BC031441, Ebi3, Ccdc94, Shd, Fsd1, AW049765, Mpnd, Sh3gl1, Chaf1a, Ubxd1, Hdgfrp2, S3-12, 2310076L09Rik, Lrg1, Sema6b, Tnfaip8l1, D17Wsu104e, Dpp9, LOC668573, A230051N06Rik, Fem1a, Ticam1, M6prbp1, Arrdc5, Uhrf1, Jmjd2b, Ptprs, EG668592, Znrf4, Safb2, Safb, 2410015M20Rik, Rpl36, Lonp1, LOC619718
Downstream geneRanbp3, Ccpn-ps, AI662250, Ndufa11, Fut4-ps1, Nrtn, Dus3l, Gm546, Rfx2, Acsbg2, 1700061G19Rik, Mllt1, Asah3, Clpp, Alkbh7, Pspn, Gtf2f1, Khsrp, Slc25a41, Slc25a23, Crb3, Dennd1c, Tubb4, Tnfsf9, Cd70, Tnfsf14, C3, Gpr108, Trip10, LOC668635, Vav1, Emr1, EG224916
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-189I06.bB6Ng01-189I06.g
ACCGA013519GA013520
length1,212821
definitionB6Ng01-189I06.b B6Ng01-189I06.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccatgtagaccatgttcaaagattttgaatatttgctctggcaag
acttttaaatttctttaaatgcattttttaattccttatattctctctcc
ctgcctttatttcctacatttgagatcaaaggcctggatttctttattcc
atgtgtacttaaaaacaattaaacaattaccagtatacttccttctatcc
ttaaaaccaatacagttctatctatctctgtcctttacttacctgtctgt
gggaggcaggcagtatctgttgtttgtctctgaggactgtctctctgcac
agcaggggctcccagcatctctgagctccagctctttgtgtaattatact
tccaaactagcaagaaattcttacagtggctcgggcaaaatctgtagcct
gtttaaaagccaattttccccaactcctaatcttatatcttggtgtctgt
gtattccatctgaggatctctaaatagtttttaatagtctataatggtga
attacttacctgctctggctcccagcaagccatgctgcacctgcccagag
ctccctggatttgagaatgagagacacacatcagctaggcctcgattaac
tcagtgactgggcatttctaatcctccccgtggctagcatatattctccc
ctccaactttccagagtcatcttgctaacattccatctctgctaccccag
acctgatcaggggagtggacccagggcccctttcccgagcccttacacag
ctgacatggtgctgtctttcctgcagctcctactttcctctgctttcctt
ccccatctctcagtctcttgccagcgtaatctaaaagtgccacccatctc
cctgcccagccatgtctatacagcaattctttattatcagtcgaagccag
ctgggggcagggactctcagatctagaagcacagctttttgggtggtccc
tactttaatacatagcattagaaccaatccccaacagaagaaaacagctt
ggtggttagaagcacagctgacctcacagagggtccaggtcaggtcccca
gcatccatgtgcagtttccacaatctcactccactcccaagctcttggcc
tcgaggggcactgcataacacacgtaacacagacctgtatggcacaattg
tagacaaccaccgaaccatggaaataggccaattcaaaataattgtgcat
taattggagagt
gaattcagtccctagcatctgtattagttgggtcacagccacctacaact
tgagctgcaaggaatccggagcctctgtaggcacctgtactcacatgtac
atacccccacacatataccagtaatttttaaatgtctttaaacacacaca
cacacacacacacacttcattacgtcagacagcagggaacatctccctat
aggacatgtactctgtggtaccctgggaagacctggggctaggcaatgac
cttggcctctccccacactctctctgaggctcctctgtctctatgccact
tcaggatgttggttggaccatacagggctgtcatggtgacttgaggctac
agtgactctgttcttctcttatctcagggcacatttcattacatggagta
ccccctgaaccatagtatggggatagccttttcatacaagaatctccttg
aagtcattatgaaaccataccagagggggtttatggtcctctggaatcag
aaaagtatattggtgtcctccaattcaggtgagccacaccctgtcgagga
ctccaccagtggggatggacatagactgggaaccccaggcttttgtatat
gtgcacgtggagaccagaggggttcatcaattgctcaattattttttttt
tcattccacattaaaaaacaaaacacaagttcgtcaaacttgggacttgc
tggttggtcaggaagtcccaaggatcctcctgtttggtgcatcctttgct
aggattacaaaccagtctagacttttacatagatgctgaagggctaaagt
caggtctacactgcggggcgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_56789789_56790608
seq2: B6Ng01-189I06.g_64_884

seq1  GAATTCAGTCCCTAGCATCTGTATTAGTTGGGTCACAGCCACCTACAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCCCTAGCATCTGTATTAGTTGGGTCACAGCCACCTACAACT  50

seq1  TGAGCTGCAAGGAATCCGGAGCCTCTGTAGGCACCTGTACTCACATGTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTGCAAGGAATCCGGAGCCTCTGTAGGCACCTGTACTCACATGTAC  100

seq1  ATACCCCCACACATATACCAGTAATTTTTAAATGTCTTTAAACACACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCCCACACATATACCAGTAATTTTTAAATGTCTTTAAACACACACA  150

seq1  CACACACACACACACTTCATTACGTCAGACAGCAGGGAACATCTCCCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACTTCATTACGTCAGACAGCAGGGAACATCTCCCTAT  200

seq1  AGGACATGTACTCTGTGGTACCCTGGGAAGACCTGGGGCTAGGCAATGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACATGTACTCTGTGGTACCCTGGGAAGACCTGGGGCTAGGCAATGAC  250

seq1  CTTGGCCTCTCCCCACACTCTCTCTGAGGCTCCTCTGTCTCTATGCCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCCTCTCCCCACACTCTCTCTGAGGCTCCTCTGTCTCTATGCCACT  300

seq1  TCAGGATGTTGGTTGGACCATACAGGGCTGTCATGGTGACTTGAGGCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATGTTGGTTGGACCATACAGGGCTGTCATGGTGACTTGAGGCTAC  350

seq1  AGTGACTCTGTTCTTCTCTTATCTCAGGGCACATTTCATTACATGGAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACTCTGTTCTTCTCTTATCTCAGGGCACATTTCATTACATGGAGTA  400

seq1  CCCCCTGAACCATAGTATGGGGATAGCCTTTTCATACAAGAATCTCCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTGAACCATAGTATGGGGATAGCCTTTTCATACAAGAATCTCCTTG  450

seq1  AAGTCATTATGAAACCATACCAGAGGGGGTTTATGGTCCTCTGGAATCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCATTATGAAACCATACCAGAGGGGGTTTATGGTCCTCTGGAATCAG  500

seq1  AAAAGTATATTGGTGTCCTCCAATTCAGGTGAGCCACACCCTGTCGAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTATATTGGTGTCCTCCAATTCAGGTGAGCCACACCCTGTCGAGGA  550

seq1  CTCCACCAGTGGGGATGGACATAGACTGGGAACCCCAGGCTTTTGTATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACCAGTGGGGATGGACATAGACTGGGAACCCCAGGCTTTTGTATAT  600

seq1  GTGCACGTGGAGACCAGAGGGGTTCATCAATTGCTCAATTATTTTTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACGTGGAGACCAGAGGGGTTCATCAATTGCTCAATTATTTTTTTTT  650

seq1  TCATTCCACATTAAAAAACAAAACACAAGTTCGTCAAACTTGGGACTTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCCACATTAAAAAACAAAACACAAGTTCGTCAAACTTGGGACTTGC  700

seq1  TGGTTGGTCAGGAAGTCCCAAGGATCCTCCTG-TTGGTGCATCCTTTGCT  749
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGGTTGGTCAGGAAGTCCCAAGGATCCTCCTGTTTGGTGCATCCTTTGCT  750

seq1  AGGATTACAAACCAGTCTAGACTTTTACATAGATGCTGAAGGGCTAAAGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTACAAACCAGTCTAGACTTTTACATAGATGCTGAAGGGCTAAAGT  800

seq1  CAGGTCTACACTGGGGGGCGG  820
      ||||||||||||| |||||||
seq2  CAGGTCTACACTGCGGGGCGG  821