BAC Information

Click to search

BAC

Clone NameB6Ng01-189P06
Chromosome17 (Build37)
Map Location 9,654,047 - 9,880,253
singlet/doubletdoublet
Overlap geneEG667170, 4932702K14Rik
Upstream geneLOC100040817, Pde10a, 1700010I14Rik, EG667165, LOC666143
Downstream geneQk, LOC675815, Pacrg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-189P06.bB6Ng01-189P06.g
ACCGA013837GA013838
length874966
definitionB6Ng01-189P06.b B6Ng01-189P06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,879,385 - 9,880,253)(9,654,047 - 9,655,011)
sequence
gaattcttaacaaaggatctctttgagcgtatctctttgatcccagttga
ctgcttactttacaactgggggcatggctgccaatcaagctaatgcttag
agaagaccctgtagaacccattctgcccattctgtaggttgttgggaggg
taattcttcctagtgactcttccggctgaccttccaacgttgctcagtat
atttgggcactggtatgacgcaacaggctctagagtcattagggaccatg
aagagaatgtaaaaatacgtgcataattaaggctaaatcctgtatataga
aatatccaattatttccacaggcacctgcttaaattcttttataaaggct
aaaagcagattgaattatttgaatatcggtgttggacatcattcggtaga
cacgagaacacagccccagatcggcatgattgaaaaaagtaaagaaaacc
tttgtttagagatgtttaaattttcacactttcagctaaatgaattcttt
ctcaaggttttctatgagagactgtgacatctatgtctattaaaggaccc
ccggagatggcaataaatacttagtacggtcatgtgtgcattcaaattac
atattgtgaactcaaatcccatcacactgagttaatttcaatgagtatga
catgaacttctgggagcgatgtcagctaaattacatgtttacaaactctg
caggcactgttctcttcagcccacagaagtaattgcccccagaaatgaaa
gcaaagaattagaaacatcacagctctgttcacgatagcatggaagtggc
gtacagtggagattgtctgtcatcagatgaacgagtaaggaaaaatgtgg
taccttttgagcgggggataacaa

gaattccataatgagcttgatgtcagcctgggctgcatgaagatccttgg
tggaggaagaagaggagggagacaaagctaaatacagaactgaagtccac
accacacagagggctccgccatgagtatgctggactctggacccagggtc
acagagagatgagctgagatctttgttctacatttctgctctagaagaac
cctcattgcttgttcctcctctatatattcatggttaattttctcttctg
tctcaccatttccaacatggaaaataggacgtcagaactaatttttcaac
tgatgtaaggcactgcattacttggaggcagctttctagaacagaatgac
tgtggtgctagggtgtcaggcagaagattacatttttctattccaaggaa
aaataaataaatattttcctcataacatctttgtggtgaagaacatcatg
atggcatctgaccagagttctgtgtcagcttcctttggagacacctgttc
aggtgtagtgggacctcagaaagaaagccaccaggacatgctggaacagc
ttacaaaaccaagaacaagatttcccttccttaacaggacactctgcttg
tggcactctcggagacttaacctccagggaacagtgagatgattagagaa
gtattcccagacatctggaatatgggtaggaggaaggttctgagtgatgg
cctcagtttcttgtgaggactctgaggatgatgcttatggcacagccact
cccatctgtggatcttgaataacatgagtggaaatgagtctcttggcaga
agagacaggattggaaaagaaaagtgtcctttgctataactagctggcat
tctttactctgtcatttcagcccaagtacttcattaccttccattatctt
aagcctaactgttcagatcctggactttgaaaattgtctgctggaaggga
tttagcgaatgttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_9879385_9880253
seq2: B6Ng01-189P06.b_44_917 (reverse)

seq1  TTGTTATCCCCCGCTC-AAAGGTACCACA-TTTTCCTTACTCGTTCATCT  48
      |||||||||||||||| |||||||||||| ||||||||||||||||||||
seq2  TTGTTATCCCCCGCTCAAAAGGTACCACATTTTTCCTTACTCGTTCATCT  50

seq1  GCTGACAGAC-ATCTCCACTGT-CGCCACTTCCATGCTATCGTGAACAGA  96
      | |||||||| ||||||||||| |||||||||||||||||||||||||||
seq2  GATGACAGACAATCTCCACTGTACGCCACTTCCATGCTATCGTGAACAGA  100

seq1  GCTGTGATGTTTCTAATTCTTTGCTTTCATTTCTGGGGGC-ATTACTTCT  145
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GCTGTGATGTTTCTAATTCTTTGCTTTCATTTCTGGGGGCAATTACTTCT  150

seq1  GTGGGCTGAAGAGAACAGTGCCTGCAGAGTTTGTAAACATGTAATTTAGC  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCTGAAGAGAACAGTGCCTGCAGAGTTTGTAAACATGTAATTTAGC  200

seq1  TGACATCGCTCCCAGAAGTTCATGTCATACTCATTGAAATTAACTCAGTG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATCGCTCCCAGAAGTTCATGTCATACTCATTGAAATTAACTCAGTG  250

seq1  TGATGGGATTTGAGTTCACAATATGTAATTTGAATGCACACATGACCGTA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGGATTTGAGTTCACAATATGTAATTTGAATGCACACATGACCGTA  300

seq1  CTAAGTATTTATTGCCATCTCCGGGGGTCCTTTAATAGACATAGATGTCA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTATTTATTGCCATCTCCGGGGGTCCTTTAATAGACATAGATGTCA  350

seq1  CAGTCTCTCATAGAAAACCTTGAGAAAGAATTCATTTAGCTGAAAGTGTG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTCTCATAGAAAACCTTGAGAAAGAATTCATTTAGCTGAAAGTGTG  400

seq1  AAAATTTAAACATCTCTAAACAAAGGTTTTCTTTACTTTTTTCAATCATG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTAAACATCTCTAAACAAAGGTTTTCTTTACTTTTTTCAATCATG  450

seq1  CCGATCTGGGGCTGTGTTCTCGTGTCTACCGAATGATGTCCAACACCGAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGATCTGGGGCTGTGTTCTCGTGTCTACCGAATGATGTCCAACACCGAT  500

seq1  ATTCAAATAATTCAATCTGCTTTTAGCCTTTATAAAAGAATTTAAGCAGG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAATAATTCAATCTGCTTTTAGCCTTTATAAAAGAATTTAAGCAGG  550

seq1  TGCCTGTGGAAATAATTGGATATTTCTATATACAGGATTTAGCCTTAATT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTGGAAATAATTGGATATTTCTATATACAGGATTTAGCCTTAATT  600

seq1  ATGCACGTATTTTTACATTCTCTTCATGGTCCCTAATGACTCTAGAGCCT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACGTATTTTTACATTCTCTTCATGGTCCCTAATGACTCTAGAGCCT  650

seq1  GTTGCGTCATACCAGTGCCCAAATATACTGAGCAACGTTGGAAGGTCAGC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCGTCATACCAGTGCCCAAATATACTGAGCAACGTTGGAAGGTCAGC  700

seq1  CGGAAGAGTCACTAGGAAGAATTACCCTCCCAACAACCTACAGAATGGGC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAAGAGTCACTAGGAAGAATTACCCTCCCAACAACCTACAGAATGGGC  750

seq1  AGAATGGGTTCTACAGGGTCTTCTCTAAGCATTAGCTTGATTGGCAGCCA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGGTTCTACAGGGTCTTCTCTAAGCATTAGCTTGATTGGCAGCCA  800

seq1  TGCCCCCAGTTGTAAAGTAAGCAGTCAACTGGGATCAAAGAGATACGCTC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCCAGTTGTAAAGTAAGCAGTCAACTGGGATCAAAGAGATACGCTC  850

seq1  AAAGAGATCCTTTGTTAAGAATTC  869
      ||||||||||||||||||||||||
seq2  AAAGAGATCCTTTGTTAAGAATTC  874


seq1: chr17_9654047_9655011
seq2: B6Ng01-189P06.g_69_1034

seq1  GAATTCCATAATGAGCTTGATGTCAGCCTGGGCTGCATGAAGATCCTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAATGAGCTTGATGTCAGCCTGGGCTGCATGAAGATCCTTGG  50

seq1  TGGAGGAAGAAGAGGAGGGAGACAAAGCTAAATACAGAACTGAAGTCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGAAGAAGAGGAGGGAGACAAAGCTAAATACAGAACTGAAGTCCAC  100

seq1  ACCACACAGAGGGCTCCGCCATGAGTATGCTGGACTCTGGACCCAGGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACACAGAGGGCTCCGCCATGAGTATGCTGGACTCTGGACCCAGGGTC  150

seq1  ACAGAGAGATGAGCTGAGATCTTTGTTCTACATTTCTGCTCTAGAAGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAGATGAGCTGAGATCTTTGTTCTACATTTCTGCTCTAGAAGAAC  200

seq1  CCTCATTGCTTGTTCCTCCTCTATATATTCATGGTTAATTTTCTCTTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATTGCTTGTTCCTCCTCTATATATTCATGGTTAATTTTCTCTTCTG  250

seq1  TCTCACCATTTCCAACATGGAAAATAGGACGTCAGAACTAATTTTTCAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACCATTTCCAACATGGAAAATAGGACGTCAGAACTAATTTTTCAAC  300

seq1  TGATGTAAGGCACTGCATTACTTGGAGGCAGCTTTCTAGAACAGAATGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTAAGGCACTGCATTACTTGGAGGCAGCTTTCTAGAACAGAATGAC  350

seq1  TGTGGTGCTAGGGTGTCAGGCAGAAGATTACATTTTTCTATTCCAAGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTGCTAGGGTGTCAGGCAGAAGATTACATTTTTCTATTCCAAGGAA  400

seq1  AAATAAATAAATATTTTCCTCATAACATCTTTGTGGTGAAGAACATCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATAAATATTTTCCTCATAACATCTTTGTGGTGAAGAACATCATG  450

seq1  ATGGCATCTGACCAGAGTTCTGTGTCAGCTTCCTTTGGAGACACCTGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCATCTGACCAGAGTTCTGTGTCAGCTTCCTTTGGAGACACCTGTTC  500

seq1  AGGTGTAGTGGGACCTCAGAAAGAAAGCCACCAGGACATGCTGGAACAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTAGTGGGACCTCAGAAAGAAAGCCACCAGGACATGCTGGAACAGC  550

seq1  TTACAAAACCAAGAACAAGATTTCCCTTCCTTAACAGGACACTCTGCTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAAACCAAGAACAAGATTTCCCTTCCTTAACAGGACACTCTGCTTG  600

seq1  TGGCACTCTCGGAGACTTAACCTCCAGGGAACAGTGAGATGATTAGAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACTCTCGGAGACTTAACCTCCAGGGAACAGTGAGATGATTAGAGAA  650

seq1  GTATTCCCAGACATCTGGAATATGGGTAGGAGGAAGGTTCTGAGTGATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCCCAGACATCTGGAATATGGGTAGGAGGAAGGTTCTGAGTGATGG  700

seq1  CCTCAGTTTCTTGTGAGGACTCTGAGGATGATGCTTATGGCACAGCCACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGTTTCTTGTGAGGACTCTGAGGATGATGCTTATGGCACAGCCACT  750

seq1  CCCATCTGTGGATC-TGAATAACATGAGTGGAAATGAGTCTCTTGGCAGA  799
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CCCATCTGTGGATCTTGAATAACATGAGTGGAAATGAGTCTCTTGGCAGA  800

seq1  AGAGACAGGATTGGAAAAGAAAAGTGTCTTTTGCTATAACTAGCTGGCAG  849
      |||||||||||||||||||||||||||| |||||||||||||||||||| 
seq2  AGAGACAGGATTGGAAAAGAAAAGTGTCCTTTGCTATAACTAGCTGGCAT  850

seq1  TCTTTACTCTGTCATTTCAGCCCAAGTACTTCATTACCTTCCATTATC-T  898
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCTTTACTCTGTCATTTCAGCCCAAGTACTTCATTACCTTCCATTATCTT  900

seq1  AAGCCTAACTGTTCAGATACCTGGACTTTGGAATATTGTCTG-TTGAAGG  947
      |||||||||||||||||| |||||||||| ||| |||||||| | |||||
seq2  AAGCCTAACTGTTCAGAT-CCTGGACTTT-GAAAATTGTCTGCTGGAAGG  948

seq1  GATTTAGGGAATGGTTTT  965
      ||||||| ||||| ||||
seq2  GATTTAGCGAATGTTTTT  966


| Home | SequenceCutter | Blast | Download |