BAC Information

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BAC

Clone NameB6Ng01-191A10
Chromosome17 (Build37)
Map Location 36,401,713 - 36,402,749
singlet/doubletsinglet
Overlap geneTrim39
Upstream geneH2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663, Ier3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10, LOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127, EG667827, LOC435525, LOC677333, LOC100043134, LOC625881, Rpp21
Downstream geneH2-M10.2, H2-M10.1, H2-M10.3, Gm318, LOC100043140, LOC674152, LOC383240, LOC224752, H2-M10.4, H2-M11, LOC667896, H2-M9, LOC620340, H2-M1, LOC667912, LOC100043158, LOC667915, H2-M10.5, H2-M10.6, Trim26, Trim15, Trim10, LOC100043164, Trim40, Trim31, Ppp1r11, Znrd1, 1700022C21Rik, H2-M6-ps, 2410137M14Rik, H2-M4-ps, D130003B22Rik, Zfp57, Mog, Gabbr1, Olfr90, Olfr91, Olfr92, EG224763, LOC667973, Olfr93, Olfr753-ps1, LOC630355, Ubd, Olfr94, Olfr95, Olfr96, Olfr97, Olfr754-ps1, Olfr98
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-191A10.bB6Ng01-191A10.g
ACCGA014633GA014634
length1,2031,046
definitionB6Ng01-191A10.b B6Ng01-191A10.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcccttgtctgggtaagactggctactgccccaagtaaacactctg
cattctagccctgagctattctagcttgttctttggaatgcctaattagt
ttcactgtctctactagaagtaaatttgaatgttactgaataggtaacct
tctcactgaattcctactgaattccaattttgtcggcttcaaggattttc
tgggacattggaacactggcgaaggcttagctatgtcagaattcaatctt
aaaaggcacttataataaaataatactaaaagagagcatgtggattcata
caccagactaactcggggataggttatgagtatacaggttatgagaacac
caaagtccaggaggtgattttctgtgaaactctttgccccttgagagctc
ccaggcctttcggcctgccaatcaaacttcactggagtgtgcgtagcatt
ctcccctttcttttttatatttctcccgaagttctggaatgttccgcctt
gttgtagctacagatctcaggagtgctctaaagatgagtgaaaacaatga
ttactaataaaataatgccaataataataatagcaagtaggattatatat
tgaacccaatccagaggattcaatgcacttaggttgttttttaaatctct
ggccattcatcaatgttccaactgtccaagtgacttctgttaatatctga
attttctgcctttctagccttaatatttgctatgtcctgccctattgcta
agactactacttctaagacattaacttttgcctccaatttttatctataa
tatgcagctctggcaaggctatggaaatattcctatgcttatcattaaca
aaatgagcagtatgcagctgctgatctaaagctgtggtagataccttttc
aaagtttgcattcccagatttttagaccaaggatcatttcctaactctaa
taggcggcaaaacataaggcaggttctctgttaacaaatcataacagcag
atttccttatctaaattagggattcttacacgatagttatttgacagaat
acaaataaatattgaaaagacttgccacgattgtgatcttactcttaaat
taacttaacaattattagcatacagtagtaacagctttacagcttagagg
atgggctgaatgccaagagttctcttgaccagagtctttgtccaaaatct
ctg
gaattcatcttcctccccttcttacccccttgttcttttaaaatagtttg
taggagcaaggcttggtgatgaggacatctaatcccaatagtccggagac
ttaagacaggagggttacaagtgaggatagccaagacttcagaagaccct
gtctcaaaaataaaatgcacagttttaaactgtgtagaggctgagggtat
agcgtccgttccccaacacagcagacagaaacacaagtttgtgaactagg
catgacagttcacacctgtaaccagaggaggctggggctggaaccccaat
atccaaatcacaaattcacagccagcacaggccagtatgggcttgtgaga
ttgtacatcctgggtggggatggagtttctaattagctatacagaaatca
acattttttaagtaaaagtccagataagatagcctatctatataattcta
aagtgattgcaatatctaataacatcagagagtaatttttaaattttttt
ttttgtgatagtttcattatgtgggtctggctagcctgggactcagagat
ctgtctgcctctgcctcctaaatactgagattaaagttatacacaccact
cccagttaaaagtgattttaattactaatccagtatgtggctatttgatt
ctgacttccctaaaagcccctccctgcttacagcttatgtgacactatga
gttcaccaagtactggctcctgagcagaggtgagcccaacaccacaagca
gccatgctcttgatgacaatgtgaagtctaagagaggcaacatacagtgt
tccggtgtgtgtgtgtgtacattctctcagagaccagaagttgacaaaat
ggggtcccctggaaatagggatacttggcagttatgtactatctagtatg
agtgttggaacccaagctcaggacttctaagaagagaaagtaagtgcttg
tctgtctcgctcgcttctgtttgcttcttttagtgacaggttttctcttg
tgtttacaatcctgtactatctggactcttgataaccaaattgtcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_36401713_36402749
seq2: B6Ng01-191A10.g_64_1109 (reverse)

seq1  GGACAATTTGGTCTACAAGGAGTCCAGATAGT-CAGGGCTCTGTAACAC-  48
      |||||||||||| ||  | ||||||||||||| ||||  | |  ||||| 
seq2  GGACAATTTGGT-TATCAAGAGTCCAGATAGTACAGGATTGT-AAACACA  48

seq1  AGAGAAACCCTGTCACTAAAA-AAACAAAC--AAACAA--CAAACAAACA  93
      ||||||| ||||||||||||| || |||||  || | |   | ||| |||
seq2  AGAGAAAACCTGTCACTAAAAGAAGCAAACAGAAGCGAGCGAGACAGACA  98

seq1  AACACTTAC-TTCTCTTC-TAGAAGTCCTGAGCTTGGTTTCCAACACTCA  141
      | ||||||| |||||||| |||||||||||||||||| ||||||||||||
seq2  AGCACTTACTTTCTCTTCTTAGAAGTCCTGAGCTTGGGTTCCAACACTCA  148

seq1  TACTAGATAGTACATAACTGCC-AGTATCCCTATTTCCAGGGGACCCCA-  189
      |||||||||||||||||||||| |||||||||||||||||||||||||| 
seq2  TACTAGATAGTACATAACTGCCAAGTATCCCTATTTCCAGGGGACCCCAT  198

seq1  TTTGTCAACTTCTGGTCTCTGAGAGAATGTACACACACACACACCGGAAC  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCAACTTCTGGTCTCTGAGAGAATGTACACACACACACACCGGAAC  248

seq1  ACTGTATGTTGCCTCTCTTAGACTTCACATTGTCATCAAGAGCATGGCTG  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATGTTGCCTCTCTTAGACTTCACATTGTCATCAAGAGCATGGCTG  298

seq1  CTTGTGGTGTTGGGCTCACCTCTGCTCAGGAGCCAGTACTTGGTGAACTC  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGGTGTTGGGCTCACCTCTGCTCAGGAGCCAGTACTTGGTGAACTC  348

seq1  ATAGTGTCACATAAGCTGTAAGCAGGGAGGGGCTTTTAGGGAAGTCAGAA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGTCACATAAGCTGTAAGCAGGGAGGGGCTTTTAGGGAAGTCAGAA  398

seq1  TCAAATAGCCACATACTGGATTAGTAATTAAAATCACTTTTAACTGGGAG  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATAGCCACATACTGGATTAGTAATTAAAATCACTTTTAACTGGGAG  448

seq1  TGGTGTGTATAACTTTAATCTCAGTATTTAGGAGGCAGAGGCAGACAGAT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTGTATAACTTTAATCTCAGTATTTAGGAGGCAGAGGCAGACAGAT  498

seq1  CTCTGAGTCCCAGGCTAGCCAGACCCACATAATGAAACTATCACAAAAAA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGTCCCAGGCTAGCCAGACCCACATAATGAAACTATCACAAAAAA  548

seq1  AAAAATTTAAAAATTACTCTCTGATGTTATTAGATATTGCAATCACTTTA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTTAAAAATTACTCTCTGATGTTATTAGATATTGCAATCACTTTA  598

seq1  GAATTATATAGATAGGCTATCTTATCTGGACTTTTACTTAAAAAATGTTG  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTATATAGATAGGCTATCTTATCTGGACTTTTACTTAAAAAATGTTG  648

seq1  ATTTCTGTATAGCTAATTAGAAACTCCATCCCCACCCAGGATGTACAATC  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGTATAGCTAATTAGAAACTCCATCCCCACCCAGGATGTACAATC  698

seq1  TCACAAGCCCATACTGGCCTGTGCTGGCTGTGAATTTGTGATTTGGATAT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAGCCCATACTGGCCTGTGCTGGCTGTGAATTTGTGATTTGGATAT  748

seq1  TGGGGTTCCAGCCCCAGCCTCCTCTGGTTACAGGTGTGAACTGTCATGCC  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTTCCAGCCCCAGCCTCCTCTGGTTACAGGTGTGAACTGTCATGCC  798

seq1  TAGTTCACAAACTTGTGTTTCTGTCTGCTGTGTTGGGGAACGGACGCTAT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCACAAACTTGTGTTTCTGTCTGCTGTGTTGGGGAACGGACGCTAT  848

seq1  ACCCTCAGCCTCTACACAGTTTAAAACTGTGCATTTTATTTTTGAGACAG  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCAGCCTCTACACAGTTTAAAACTGTGCATTTTATTTTTGAGACAG  898

seq1  GGTCTTCTGAAGTCTTGGCTATCCTCACTTGTAACCCTCCTGTCTTAAGT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTCTGAAGTCTTGGCTATCCTCACTTGTAACCCTCCTGTCTTAAGT  948

seq1  CTCCGGACTATTGGGATTAGATGTCCTCATCACCAAGCCTTGCTCCTACA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGGACTATTGGGATTAGATGTCCTCATCACCAAGCCTTGCTCCTACA  998

seq1  AACTATTTTAAAAGAACAAGGGGGTAAGAAGGGGAGGAAGATGAATTC  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTTTAAAAGAACAAGGGGGTAAGAAGGGGAGGAAGATGAATTC  1046