BAC Information

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BAC

Clone NameB6Ng01-191B22
Chromosome9 (Build37)17 (Build37)
Map Location 114,393,935 - 114,394,96867,313,571 - 67,313,653
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100043802, LOC636680, Pdcd6ip, Clasp2, Ubp1, Fbxl2, Susd5, EG665719, 4921528I07Rik, Bcl2a1c, 4930520O04Rik, Crtap, Glb1
Downstream geneCcr4, Trim71, LOC100043808, Cnot10, LOC665772, Dync1li1, Cmtm6, Cmtm7, Cmtm8, Gpd1l, LOC100043813, Osbpl10, LOC100043812, Stt3b, LOC100039567, LOC670467, EG546164
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-191B22.bB6Ng01-191B22.g
ACCGA014699GA014700
length1,033174
definitionB6Ng01-191B22.b B6Ng01-191B22.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(114,393,935 - 114,394,968)(67,313,571 - 67,313,653)
sequence
gaattcactttgggtcatgctttaaagggctagagcccatcttggcagaa
gagacatggcagggcttggttgactatggccagaacttcagctcctcacc
tcttagtgacacaagatgcagagatctgaggctgggcaatcacccctctc
tattggtccacttcctcaaaccagactccacctcctatggactccatgac
atagcccggcacagtggctccacagtgggctctgcctttaatctcaacat
ccaggagctgtatagtgagaccctgtctgcaagcaaaagaaaaacacccc
cgcccacagcttctcagacagcaccaccagggaacaagtgtttaaacaca
ccgacctatgggaagcatttcatattcagacccaaacacacgggaactcc
tgtctagggtctgcttctagaaacaccccgtgagtccctctgcagcctgc
agcctgactgctttgcaggtttggcttggttttaggtgtgagtttgtgtt
catcccccttctcacaaggcccgcatctcatgtgtgtactcagaagtgga
aaggtcgtgcgtggatgtgcgtggatctgcctaagaccctaacttcaagg
tccctcctattatgttgaaccccatgttctgaagtggtgctacttcctgc
ttcaggaagttctgctgacaggtttgcttagatttcttttcttttctttc
tttttttttttttttttgaaatgctgtttacttttgttgatatatagtat
ccatgccaaagcatacacatttgtctttgttttacatttttacttctttt
ttttttttaagatttttatttatttattatatgtaagcacactgtagctg
tctttagacactccagaagagggcatcagatcttgttacagatggttgtg
agccaccatgtggttgctgggattggaacttcggaccttcagaagagcag
tcgggtgcctcctctacccactgagccatctcaccagcccccattttact
tcttaatgctctctctctctctctgtgtgtgtg
tatcgctgcaacaatagaagcaaggaagcatggccaagaaagtaagtcag
ggagggaaggctttaatcagcccacatttccatcttgctgatcatcacca
aaggaagtcaggacaggagctcaagcagggcaggaccctggaggcaggag
ctgatgcagagccatggagggatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_114393935_114394968
seq2: B6Ng01-191B22.b_47_1079

seq1  GAATTCACTTTGGGTCATGCTTTAAAGGGCTAGAGCCCATCTTGGCAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGGGTCATGCTTTAAAGGGCTAGAGCCCATCTTGGCAGAA  50

seq1  GAGACATGGCAGGGCTTGGTTGACTATGGCCAGAACTTCAGCTCCTCACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACATGGCAGGGCTTGGTTGACTATGGCCAGAACTTCAGCTCCTCACC  100

seq1  TCTTAGTGACACAAGATGCAGAGATCTGAGGCTGGGCAATCACCCCTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGTGACACAAGATGCAGAGATCTGAGGCTGGGCAATCACCCCTCTC  150

seq1  TATTGGTCCACTTCCTCAAACCAGACTCCACCTCCTATGGACTCCATGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGTCCACTTCCTCAAACCAGACTCCACCTCCTATGGACTCCATGAC  200

seq1  ATAGCCCGGCACAGTGGCTCCACAGTGGGCTCTGCCTTTAATCTCAACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCCGGCACAGTGGCTCCACAGTGGGCTCTGCCTTTAATCTCAACAT  250

seq1  CCAGGAGCTGTATAGTGAGACCCTGTCTGCAAGCAAAAGAAAAACACCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGCTGTATAGTGAGACCCTGTCTGCAAGCAAAAGAAAAACACCCC  300

seq1  CGCCCACAGCTTCTCAGACAGCACCACCAGGGAACAAGTGTTTAAACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCACAGCTTCTCAGACAGCACCACCAGGGAACAAGTGTTTAAACACA  350

seq1  CCGACCTATGGGAAGCATTTCATATTCAGACCCAAACACACGGGAACTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGACCTATGGGAAGCATTTCATATTCAGACCCAAACACACGGGAACTCC  400

seq1  TGTCTAGGGTCTGCTTCTAGAAACACCCCGTGAGTCCCTCTGCAGCCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAGGGTCTGCTTCTAGAAACACCCCGTGAGTCCCTCTGCAGCCTGC  450

seq1  AGCCTGACTGCTTTGCAGGTTTGGCTTGGTTTTAGGTGTGAGTTTGTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGACTGCTTTGCAGGTTTGGCTTGGTTTTAGGTGTGAGTTTGTGTT  500

seq1  CATCCCCCTTCTCACAAGGCCCGCATCTCATGTGTGTACTCAGAAGTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCCCTTCTCACAAGGCCCGCATCTCATGTGTGTACTCAGAAGTGGA  550

seq1  AAGGTCGTGCGTGGATGTGCGTGGATCTGCCTAAGACCCTAACTTCAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCGTGCGTGGATGTGCGTGGATCTGCCTAAGACCCTAACTTCAAGG  600

seq1  TCCCTCCTATTATGTTGAACCCCATGTTCTGAAGTGGTGCTACTTCCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCTATTATGTTGAACCCCATGTTCTGAAGTGGTGCTACTTCCTGC  650

seq1  TTCAGGAAGTTCTGCTGACAGGTTTGCTTAGATTTCTTTTCTTTTCTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGAAGTTCTGCTGACAGGTTTGCTTAGATTTCTTTTCTTTTCTTTC  700

seq1  TTTTTTTTTTTTTTTTTGAAATGCTGTTTACTTTTGTTGATATATAGTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTGAAATGCTGTTTACTTTTGTTGATATATAGTAT  750

seq1  CCATGCCAAAGCATACACATTTGTCTTTGTTTTACATTTTTACTTCTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCCAAAGCATACACATTTGTCTTTGTTTTACATTTTTACTTCTTTT  800

seq1  TTTTTTTTAAGATTTTTATTTATTTATTATATGTAAGCACACTGTAGCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTAAGATTTTTATTTATTTATTATATGTAAGCACACTGTAGCTG  850

seq1  TCTTTAGACACTCCAGAAGAGGGCATCAGATCTTGTTACAGATGGTTGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGACACTCCAGAAGAGGGCATCAGATCTTGTTACAGATGGTTGTG  900

seq1  AGCCACCATGTGGTTGCTGGGATTTGAACTTCGGACCTTCAGAAGAGCAG  950
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AGCCACCATGTGGTTGCTGGGATTGGAACTTCGGACCTTCAGAAGAGCAG  950

seq1  TCGGGTG-CTCCTCCTACCCACTGAGCCATCTCACCAGCCCCCATTTTTA  999
      ||||||| ||||| |||||||||||||||||||||||||||||| |||||
seq2  TCGGGTGCCTCCT-CTACCCACTGAGCCATCTCACCAGCCCCCA-TTTTA  998

seq1  CTTCTTAATGCTCTCTCTCTCTCTCTGTGTGTGTG  1034
      |||||||||||||||||||||||||||||||||||
seq2  CTTCTTAATGCTCTCTCTCTCTCTCTGTGTGTGTG  1033

seq1: chr17_67313571_67313653
seq2: B6Ng01-191B22.g_162_244 (reverse)

seq1  CATCCCTCCATGGCCTCTGCATCAGCTCCTGCCTCCAGGTTCCTGCCCTG  50
      ||||||||||||| ||||||||||||||||||||||||| ||||||||||
seq2  CATCCCTCCATGG-CTCTGCATCAGCTCCTGCCTCCAGGGTCCTGCCCTG  49

seq1  -GTGAGTTCCTGTCTTGACTTCCTTTGGTGATGA  83
        |||| ||||||| |||||||||||||||||||
seq2  CTTGAGCTCCTGTCCTGACTTCCTTTGGTGATGA  83