BAC Information

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BAC

Clone NameB6Ng01-191N07
Chromosome17 (Build37)
Map Location 81,949,181 - 82,131,202
singlet/doubletdoublet
Overlap geneSlc8a1
Upstream geneCdkl4, F420015M19Rik, Map4k3, LOC100043697, C230072F16Rik, LOC675572, EG668830, Tmem178, Thumpd2, LOC100043700, LOC100043704
Downstream geneEG668832, LOC100043707, LOC625467, LOC668836, EG433141, EG625514
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-191N07.bB6Ng01-191N07.g
ACCGA015227GA015228
length1,170296
definitionB6Ng01-191N07.b B6Ng01-191N07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,130,046 - 82,131,202)(81,949,181 - 81,949,476)
sequence
gataaaaataagataagaatctttaaaaaggaagtattataattctccca
tatgtgttaaatcccatttaaattcaaattcacaaatataaacccaagaa
caaaaacccacttgatgttcaacttacattttaaattacacttatgagct
caggacctctggaaattgaatgtaaaatatgcaccaatattgtgagtcat
gcacttagttcaataaaacttatgataaaaactaaaactaaagcaataaa
aattggttagatttttgcaagaagatataatgaaagctcttctttcctcc
tccttctccttctcctcctctcctcatgaacatgcagaggactatgtcaa
atccacttcctaacgcacttgcatttcctctgtacacattcacaatcact
tattatgttgtttccctagatgtggttttgctattttaacataagtactc
ttttgctgagagagagacaaagagacagagagacagagagagacagagag
agacagagagagacagagacaaagacagagagaatctattatgaaaccaa
caggagaaatgagaacaagaaagtttagaggcacaaacaattgtatactc
ccagccgctaggtgtctatagacctggataagcttcatttaaaaatatta
tcaggaaccagtatcacataaactgtaaacaaccacagaaattcataaat
tatatagcataactttctgaggaattaaaaacactggagggcgtggtaag
taaaagtacttcatgtgcagtcacaaggacatggcttcaaatccctagac
cagtgaaaaaccagacagtgtgcatctgtaactcctgtgttccccggtag
agataggagtgatgcagagacagtagaatacccagaagtccgtgtgccga
gtcattctggagaacacagaggtgaacacaggagtaaacaaaggtagaag
gtgaataccaacacctcaaagtagtccttctgaatctcctcaagcaatgc
atgatattaaaacatgcacactcacacacactacacacacacactccacc
acatacattattatacacattgataacaccacatgcacacacattgcaca
taaccacacacacaacataccttgcagaacacattacaatacacacacgt
aaccacacccaacacacaca
atttttccctactaatgtccatagtgcacatgaatatggaatattgtcac
atgcttatgatgtgttttctttttttttaatgatttgtatagttggctct
gtgcagaagctggaggaaggcattgcatgccctgcagctggagggacagg
tggttgtgagctgcacaagtttagtcctgggaacttaactctggttatct
gcaggagcagtatggattcttgactactgcactatttctctagcccaggt
gaaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_82130046_82131202
seq2: B6Ng01-191N07.b_52_1221 (reverse)

seq1  TGTGTGTGT--GGTGTGTGTATGTGTGTGTATGTGATTGTG-TCTGCAAG  47
      |||||||||  ||||||  || ||||||||||   | |||| ||||||||
seq2  TGTGTGTGTTGGGTGTGGTTACGTGTGTGTATTGTAATGTGTTCTGCAAG  50

seq1  TGTATGTTGTGTGTGTGG-TATGTGC-ATGTGTGTGCATGTGGTGTTTAT  95
       ||||||||||||||||| ||||||| |||||||||||||||||| ||||
seq2  -GTATGTTGTGTGTGTGGTTATGTGCAATGTGTGTGCATGTGGTG-TTAT  98

seq1  C-ATGTGTATA--TATGTATGTGGTGTGTGTGTGTGTGTGT-GTGTGTGT  141
      | |||||||||   |||||||||||| | |||||||||||| ||||||||
seq2  CAATGTGTATAATAATGTATGTGGTG-GAGTGTGTGTGTGTAGTGTGTGT  147

seq1  GTGTGTGCATGTTT--ATATCATGCATTGCTTGAGGAGA-TCAG-AGGAC  187
      | ||||||||||||  ||||||||||||||||||||||| |||| |||||
seq2  GAGTGTGCATGTTTTAATATCATGCATTGCTTGAGGAGATTCAGAAGGAC  197

seq1  TACTTTGA-GTGTTGGTATTCACCTTCTACC-TTGTTTACTCCTGTGTTC  235
      |||||||| |||||||||||||||||||||| ||||||||||||||||||
seq2  TACTTTGAGGTGTTGGTATTCACCTTCTACCTTTGTTTACTCCTGTGTTC  247

seq1  ACCTCTGTGTTCTCCAG-ATGACTCGGCACACGGACTTCTGGGTATTCTA  284
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ACCTCTGTGTTCTCCAGAATGACTCGGCACACGGACTTCTGGGTATTCTA  297

seq1  CTGTCTCTGCATCACTCCTATCTCTACCGGGGAACACAGGAGTTACAGAT  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCTGCATCACTCCTATCTCTACCGGGGAACACAGGAGTTACAGAT  347

seq1  GCACACTGTCTGGTTTTTCACTGGTCTAGGGATTTGAAGCCATGTCCTTG  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACTGTCTGGTTTTTCACTGGTCTAGGGATTTGAAGCCATGTCCTTG  397

seq1  TGACTGCACATGAAGTACTTTTACTTACCACGCCCTCCAGTGTTTTTAAT  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGCACATGAAGTACTTTTACTTACCACGCCCTCCAGTGTTTTTAAT  447

seq1  TCCTCAGAAAGTTATGCTATATAATTTATGAATTTCTGTGGTTGTTTACA  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGAAAGTTATGCTATATAATTTATGAATTTCTGTGGTTGTTTACA  497

seq1  GTTTATGTGATACTGGTTCCTGATAATATTTTTAAATGAAGCTTATCCAG  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATGTGATACTGGTTCCTGATAATATTTTTAAATGAAGCTTATCCAG  547

seq1  GTCTATAGACACCTAGCGGCTGGGAGTATACAATTGTTTGTGCCTCTAAA  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATAGACACCTAGCGGCTGGGAGTATACAATTGTTTGTGCCTCTAAA  597

seq1  CTTTCTTGTTCTCATTTCTCCTGTTGGTTTCATAATAGATTCTCTCTGTC  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTGTTCTCATTTCTCCTGTTGGTTTCATAATAGATTCTCTCTGTC  647

seq1  TTTGTCTCTGTCTCTCTCTGTCTCTCTCTGTCTCTCTCTGTCTCTCTGTC  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTCTGTCTCTCTCTGTCTCTCTCTGTCTCTCTCTGTCTCTCTGTC  697

seq1  TCTTTGTCTCTCTCTCAGCAAAAGAGTACTTATGTTAAAATAGCAAAACC  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTCTCTCTCTCAGCAAAAGAGTACTTATGTTAAAATAGCAAAACC  747

seq1  ACATCTAGGGAAACAACATAATAAGTGATTGTGAATGTGTACAGAGGAAA  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTAGGGAAACAACATAATAAGTGATTGTGAATGTGTACAGAGGAAA  797

seq1  TGCAAGTGCGTTAGGAAGTGGATTTGACATAGTCCTCTGCATGTTCATGA  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGTGCGTTAGGAAGTGGATTTGACATAGTCCTCTGCATGTTCATGA  847

seq1  GGAGAGGAGGAGAAGGAGAAGGAGGAGGAAAGAAGAGCTTTCATTATATC  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGAGGAGAAGGAGAAGGAGGAGGAAAGAAGAGCTTTCATTATATC  897

seq1  TTCTTGCAAAAATCTAACCAATTTTTATTGCTTTAGTTTTAGTTTTTATC  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGCAAAAATCTAACCAATTTTTATTGCTTTAGTTTTAGTTTTTATC  947

seq1  ATAAGTTTTATTGAACTAAGTGCATGACTCACAATATTGGTGCATATTTT  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTTTTATTGAACTAAGTGCATGACTCACAATATTGGTGCATATTTT  997

seq1  ACATTCAATTTCCAGAGGTCCTGAGCTCATAAGTGTAATTTAAAATGTAA  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCAATTTCCAGAGGTCCTGAGCTCATAAGTGTAATTTAAAATGTAA  1047

seq1  GTTGAACATCAAGTGGGTTTTTGTTCTTGGGTTTATATTTGTGAATTTGA  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAACATCAAGTGGGTTTTTGTTCTTGGGTTTATATTTGTGAATTTGA  1097

seq1  ATTTAAATGGGATTTAACACATATGGGAGAATTATAATACTTCCTTTTTA  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAATGGGATTTAACACATATGGGAGAATTATAATACTTCCTTTTTA  1147

seq1  AAGATTCTTATCTTATTTTTATC  1157
      |||||||||||||||||||||||
seq2  AAGATTCTTATCTTATTTTTATC  1170

seq1: chr17_81949181_81949476
seq2: B6Ng01-191N07.g_71_366

seq1  ATTTTTCCCTACTAATGTCCATAGTGCACATGAATATGGAATATTGTCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCCCTACTAATGTCCATAGTGCACATGAATATGGAATATTGTCAC  50

seq1  ATGCTTATGATGTGTTTTCTTTTTTTTTAATGATTTGTATAGTTGGCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTATGATGTGTTTTCTTTTTTTTTAATGATTTGTATAGTTGGCTCT  100

seq1  GTGCAGAAGCTGGAGGAAGGCATTGCATGCCCTGCAGCTGGAGGGACAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGAAGCTGGAGGAAGGCATTGCATGCCCTGCAGCTGGAGGGACAGG  150

seq1  TGGTTGTGAGCTGCACAAGTTTAGTCCTGGGAACTTAACTCTGGTTATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGTGAGCTGCACAAGTTTAGTCCTGGGAACTTAACTCTGGTTATCT  200

seq1  GCAGGAGCAGTATGGATTCTTGACTACTGCACTATTTCTCTAGCCCAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGCAGTATGGATTCTTGACTACTGCACTATTTCTCTAGCCCAGGT  250

seq1  GAAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  296
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  296