BAC Information

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BAC

Clone NameB6Ng01-192K17
Chromosome17 (Build37)
Map Location 82,688,519 - 82,828,133
singlet/doubletdoublet
Overlap geneLOC668836, EG433141
Upstream geneLOC100043704, Slc8a1, EG668832, LOC100043707, LOC625467
Downstream geneEG625514, LOC100043711, LOC100043900, AW548124, EG545226, Eml4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-192K17.bB6Ng01-192K17.g
ACCGA015848GA015849
length1,1631,100
definitionB6Ng01-192K17.b B6Ng01-192K17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,688,519 - 82,689,632)(82,827,037 - 82,828,133)
sequence
gaattccaagctagcatatctgctctatctcctatgggatgatctgtgct
gacttgaaattcgaccaagttcccatcagcaaacagatcttcaattaatt
gtggccttttgaccctcgacactggagctttcagaaacatgatcaatgcc
tgcctcattataaattacttagtttctgtcattcacacagagaaacataa
aatggattaggacccctttaatatcccagcagtagatctgtgtctccttt
gttctggaatatgctttatttttccattaatgtcaaatttgcatctcgtc
aggacttccatctcaccaagtcaaaaatcagtgattagcaaggaaagtgt
ctaggcacagcagaccctgagaccagaagtcacaaagataacacaatgac
aaatatgatttttctacacaaagaacaaaacactccctcagggggggagg
aactggctcctgcaggagagggtcagctgcaggaagcctgcttgctgaag
tcttacagatcaaaaatcatgaattcagccaagctacccactcctattgc
cttgtccagcacaactttttcatagggaattgaagttccatttaaaacca
gaaatggcaatggtaccatgctttcatttttgtcactggatgtttggaca
aaaggaaagctattaaaaacttgaaacttggagcctggggcctgggcatt
cttttggaaagaaattacaaagttatccatgaggtggatattataatact
ggggccggtggtttcagaacctggagcaatgtgtaatttaacctcctggt
ggggagatcatgtgaaagcaaaattagaaagcaatgaaagctgtgactgg
tcacagaggcctgtctgtcctcctgtttgattgctttgcttttcatttgc
tgaagtataacctagggcattatagccaactgtctctttggtagaaatat
gttcttgtcactggcaaatacattttcttttctgaaacagaacatactgg
acacgagtacagttcaattcgagcacaatacactgacatactagaagttt
aagacattgtattttacactttgacaataacatagattaaggaaatatta
ctgatgcttaatataaaacccattatataagtataagtagagttgtttct
ttctacaatttac
gaattctgcataaaagacacttatggaaaattaaatagacatttgtcatt
cttaccattcatcatgaatgctcagggtgagatagggccatgctcaggag
agaatgcacagcccaaactattagaaatgttgtacaaggaagaaactcct
acccctctgtagaagtacaatattgtttaagtgtagcatcaaggaactgt
ggccctgtcattcacatctgagtatttcacactacctatgctttatgtgt
agcttggagacaggcataccattgccaggaagatacattacatgagaatc
aatgaaattagtctgtgaaaactgatagtcaaatattattacacatttct
ctgaatcataatggtctgaaataacctgtccagctacagttaagttttag
tggtagtattgcatgggaaatcctacctttgggaaatattaggcagttgt
cactgaaatttggaaagctgagaagtaatagcatggtcccctttaatttt
ttgtactaatgatgataataggtggtaagtgctgcgtataaaggtagatg
taatatcttcatgttggtattggcagctctaaaagccacgataataagaa
atggctattggtatctatttggtttcatgaagtatgccatatttaattaa
atcatcactaggaatcatcacttctgtacaaaggctttcaaatagctagt
attttatagacaaatttagtaaataaagaagaatggaatatgcttaagct
cctccttgtaaacagcagaaataagtccactcttgatggaagaatgattg
acactaaggccagtatgttattatttcaaggatatcctggcttgcttagc
tttcttctttcttctacatgattgcatggtgtcagtaaaacattgtgtgt
attactgagtcacttttcttgtcttttggctttccttctttgactttcac
aataagattggggatttacttatcctaggttacagttactgacttaggca
cacagggaatacaccaattaaagcatacagagggaccactgaagcttttg
catgtccatgttaggattcttctttttgcttcagttaggtaccttgtcaa

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_82688519_82689632
seq2: B6Ng01-192K17.b_46_1208

seq1  GAATTCCAAGCTAGCATATCTGCTCTATCTCCTATGGGATGATCTGTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGCTAGCATATCTGCTCTATCTCCTATGGGATGATCTGTGCT  50

seq1  GACTTGAAATTCGACCAAGTTCCCATCAGCAAACAGATCTTCAATTAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGAAATTCGACCAAGTTCCCATCAGCAAACAGATCTTCAATTAATT  100

seq1  GTGGCCTTTTGACCCTCGACACTGGAGCTTTCAGAAACATGATCAATGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCTTTTGACCCTCGACACTGGAGCTTTCAGAAACATGATCAATGCC  150

seq1  TGCCTCATTATAAATTACTTAGTTTCTGTCATTCACACAGAGAAACATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCATTATAAATTACTTAGTTTCTGTCATTCACACAGAGAAACATAA  200

seq1  AATGGATTAGGACCCCTTTAATATCCCAGCAGTAGATCTGTGTCTCCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGATTAGGACCCCTTTAATATCCCAGCAGTAGATCTGTGTCTCCTTT  250

seq1  GTTCTGGAATATGCTTTATTTTTCCATTAATGTCAAATTTGCATCTCGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGGAATATGCTTTATTTTTCCATTAATGTCAAATTTGCATCTCGTC  300

seq1  AGGACTTCCATCTCACCAAGTCAAAAATCAGTGATTAGCAAGGAAAGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTTCCATCTCACCAAGTCAAAAATCAGTGATTAGCAAGGAAAGTGT  350

seq1  CTAGGCACAGCAGACCCTGAGACCAGAAGTCACAAAGATAACACAATGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCACAGCAGACCCTGAGACCAGAAGTCACAAAGATAACACAATGAC  400

seq1  AAATATGA-TTTTCTACACAAAGAACAAAACACT-CCTCAGGGGG---AG  445
      |||||||| ||||||||||||||||||||||||| ||||||||||    |
seq2  AAATATGATTTTTCTACACAAAGAACAAAACACTCCCTCAGGGGGGGAGG  450

seq1  AACTGGCTCCTGCAGGAGAGGGTCAGCTGCA-GAAG-CTGCTTGCTGAAG  493
      ||||||||||||||||||||||||||||||| |||| |||||||||||||
seq2  AACTGGCTCCTGCAGGAGAGGGTCAGCTGCAGGAAGCCTGCTTGCTGAAG  500

seq1  TCTTACAGATC-AAAATCATGAA-TCAGCCAAGCTA-CCACT-CTA-TGC  538
      ||||||||||| ||||||||||| |||||||||||| ||||| ||| |||
seq2  TCTTACAGATCAAAAATCATGAATTCAGCCAAGCTACCCACTCCTATTGC  550

seq1  C-TGT-CAGCACAAC-TTTTCATA-GGAAT--GAGTTCCATTTAAA--CA  580
      | ||| ||||||||| |||||||| |||||   |||||||||||||  ||
seq2  CTTGTCCAGCACAACTTTTTCATAGGGAATTGAAGTTCCATTTAAAACCA  600

seq1  GAAATGGCAAT-GTACCATGC-TTCA-TTTTGTCACT-GATGTT--GACA  624
      ||||||||||| ||||||||| |||| |||||||||| ||||||  ||||
seq2  GAAATGGCAATGGTACCATGCTTTCATTTTTGTCACTGGATGTTTGGACA  650

seq1  AA---GAAGCTAT--AAAACTTG-AACTT-GAGC--TGGGCCT-GGCA-T  663
      ||    |||||||  |||||||| ||||| ||||   |||||| |||| |
seq2  AAAGGAAAGCTATTAAAAACTTGAAACTTGGAGCCTGGGGCCTGGGCATT  700

seq1  CTTTT-GAAAG-AATTACAAAG-TATCAATGA-GTGAATA-TAT-ATACT  707
      ||||| ||||| |||||||||| |||| |||| ||| ||| ||| |||||
seq2  CTTTTGGAAAGAAATTACAAAGTTATCCATGAGGTGGATATTATAATACT  750

seq1  GGG--CTGT-GTTTCAGA--CT-GAGCAA--TGTAATTTACTCT----GT  745
      |||  | || ||||||||  || ||||||  |||||||||  ||    ||
seq2  GGGGCCGGTGGTTTCAGAACCTGGAGCAATGTGTAATTTAACCTCCTGGT  800

seq1  -GGGAG-TCA--TGAAAGCAAAATTAGAAAGCAATGAAGGCTGTGACTGG  791
       ||||| |||  |||||||||||||||||||||||||| |||||||||||
seq2  GGGGAGATCATGTGAAAGCAAAATTAGAAAGCAATGAAAGCTGTGACTGG  850

seq1  TCACAGAGGCCTGTCTGTCCTCCTGTTTGATTGCTTTGCTTTTCATTTGC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGAGGCCTGTCTGTCCTCCTGTTTGATTGCTTTGCTTTTCATTTGC  900

seq1  TGAAGTATAACCTAGGGCATTATAGCCAACTGTCTCTTTGGTAGAAATAT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTATAACCTAGGGCATTATAGCCAACTGTCTCTTTGGTAGAAATAT  950

seq1  GTTCTTGTCACTGGCAAATACATTTTCTTTTCTGAAACAGAACATACTGG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTGTCACTGGCAAATACATTTTCTTTTCTGAAACAGAACATACTGG  1000

seq1  ACACGAGTACAGTTCAATTCCGAAGCAACAAATACACTGACATACTAGAA  991
      ||||||||||||||||||||   ||||   ||||||||||||||||||||
seq2  ACACGAGTACAGTTCAATTC--GAGCA--CAATACACTGACATACTAGAA  1046

seq1  GTTTAAAGACA-TGTATTTTACACTTTTGACAATAACATAGAATTAAAGG  1040
      |||| |||||| |||||||||||| |||||||||||||||| |||||  |
seq2  GTTT-AAGACATTGTATTTTACAC-TTTGACAATAACATAG-ATTAA--G  1091

seq1  GAAATATTACTTGATGCTT-ATAT-AGACCCA-TATATAAGTATAAGGTA  1087
      |||||||||| |||||||| |||| | ||||| ||||||||||||| |||
seq2  GAAATATTAC-TGATGCTTAATATAAAACCCATTATATAAGTATAA-GTA  1139

seq1  GAAGTTGTTTCTTTCCTACAAATTTAC  1114
      | |||||||||||| |||| |||||||
seq2  G-AGTTGTTTCTTT-CTAC-AATTTAC  1163

seq1: chr17_82827037_82828133
seq2: B6Ng01-192K17.g_66_1165 (reverse)

seq1  TTGACAA-GTA-CTAACTGAAGCAAAAAGAAGAATCCTAACATGGACCAT  48
      ||||||| ||| |||||||||||||||||||||||||||||||||| |||
seq2  TTGACAAGGTACCTAACTGAAGCAAAAAGAAGAATCCTAACATGGA-CAT  49

seq1  GCAAAAGCTTTCAGTTGGTCCTCTGTATGCTTTAATTTGGTGTATTCCCT  98
      |||||||| |||||| |  |||||||||||||||| ||||||||||||| 
seq2  GCAAAAGC-TTCAGTGGTCCCTCTGTATGCTTTAA-TTGGTGTATTCCC-  96

seq1  TGTGTGCCTAAAGTCAGT-ACTGTAACCTAGGAT-AGTAAATCCCCAATC  146
      ||||||||| |||||||| ||||||||||||||| |||||||||||||||
seq2  TGTGTGCCT-AAGTCAGTAACTGTAACCTAGGATAAGTAAATCCCCAATC  145

seq1  -TATTGTGAAAGTCAAAGAAGG-AAGCCAAAAGACAAGAAAAGTGACTCA  194
       ||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTATTGTGAAAGTCAAAGAAGGAAAGCCAAAAGACAAGAAAAGTGACTCA  195

seq1  GT-ATACACACAATGTTTTACTGACACCATGCAATCATGTAGAAGAAAGA  243
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATACACACAATGTTTTACTGACACCATGCAATCATGTAGAAGAAAGA  245

seq1  AGAAAGCTAAGCAAGCCAGGATATCCTTG-AATAATAACATACTGGCCTT  292
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AGAAAGCTAAGCAAGCCAGGATATCCTTGAAATAATAACATACTGGCCTT  295

seq1  AGTGTCAATCATTCTTCCATCAAGAGTGGACTTATTTCTGCTGTTTACAA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCAATCATTCTTCCATCAAGAGTGGACTTATTTCTGCTGTTTACAA  345

seq1  GGAGGAGCTTAAGCATATTCCATTCTTCTTTATTTACTAAATTTGTCTAT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGCTTAAGCATATTCCATTCTTCTTTATTTACTAAATTTGTCTAT  395

seq1  AAAATACTAGCTATTTGAAAGCCTTTGTACAGAAGTGATGATTCCTAGTG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACTAGCTATTTGAAAGCCTTTGTACAGAAGTGATGATTCCTAGTG  445

seq1  ATGATTTAATTAAATATGGCATACTTCATGAAACCAAATAGATACCAATA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTAATTAAATATGGCATACTTCATGAAACCAAATAGATACCAATA  495

seq1  GCCATTTCTTATTATCGTGGCTTTTAGAGCTGCCAATACCAACATGAAGA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTTCTTATTATCGTGGCTTTTAGAGCTGCCAATACCAACATGAAGA  545

seq1  TATTACATCTACCTTTATACGCAGCACTTACCACCTATTATCATCATTAG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACATCTACCTTTATACGCAGCACTTACCACCTATTATCATCATTAG  595

seq1  TACAAAAAATTAAAGGGGACCATGCTATTACTTCTCAGCTTTCCAAATTT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAAAATTAAAGGGGACCATGCTATTACTTCTCAGCTTTCCAAATTT  645

seq1  CAGTGACAACTGCCTAATATTTCCCAAAGGTAGGATTTCCCATGCAATAC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGACAACTGCCTAATATTTCCCAAAGGTAGGATTTCCCATGCAATAC  695

seq1  TACCACTAAAACTTAACTGTAGCTGGACAGGTTATTTCAGACCATTATGA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACTAAAACTTAACTGTAGCTGGACAGGTTATTTCAGACCATTATGA  745

seq1  TTCAGAGAAATGTGTAATAATATTTGACTATCAGTTTTCACAGACTAATT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGAAATGTGTAATAATATTTGACTATCAGTTTTCACAGACTAATT  795

seq1  TCATTGATTCTCATGTAATGTATCTTCCTGGCAATGGTATGCCTGTCTCC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGATTCTCATGTAATGTATCTTCCTGGCAATGGTATGCCTGTCTCC  845

seq1  AAGCTACACATAAAGCATAGGTAGTGTGAAATACTCAGATGTGAATGACA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTACACATAAAGCATAGGTAGTGTGAAATACTCAGATGTGAATGACA  895

seq1  GGGCCACAGTTCCTTGATGCTACACTTAAACAATATTGTACTTCTACAGA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCACAGTTCCTTGATGCTACACTTAAACAATATTGTACTTCTACAGA  945

seq1  GGGGTAGGAGTTTCTTCCTTGTACAACATTTCTAATAGTTTGGGCTGTGC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTAGGAGTTTCTTCCTTGTACAACATTTCTAATAGTTTGGGCTGTGC  995

seq1  ATTCTCTCCTGAGCATGGCCCTATCTCACCCTGAGCATTCATGATGAATG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTCCTGAGCATGGCCCTATCTCACCCTGAGCATTCATGATGAATG  1045

seq1  GTAAGAATGACAAATGTCTATTTAATTTTCCATAAGTGTCTTTTATGCAG  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAATGACAAATGTCTATTTAATTTTCCATAAGTGTCTTTTATGCAG  1095

seq1  AATTC  1097
      |||||
seq2  AATTC  1100