BAC Information

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BAC

Clone NameB6Ng01-194P19
Chromosome17 (Build37)
Map Location 90,627,183 - 90,754,005
singlet/doubletdoublet
Overlap geneNrxn1
Upstream geneLOC100043904, LOC100043906
Downstream geneEG668871, LOC668872, LOC627235
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-194P19.bB6Ng01-194P19.g
ACCGA017532GA017533
length1,2011,117
definitionB6Ng01-194P19.b B6Ng01-194P19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,752,798 - 90,754,005)(90,627,183 - 90,628,300)
sequence
gaattccctctgtagaccaggcctgcctggcactcagagttccatgtgcc
tctgcctcccgagagcagggattaaagctgtgcacagccagaaaggaggg
ttctttatcagcatcaaccaggagttgcctcctgaaaaccagctgaagag
cttgtctagccagtacagttcattcctacggagggaatgctctatgacca
ctggagaacatattataactaggtttctatggagacagtttaaaggtgga
cttttcccatcaaggaaaataattttcgccttggacctagtccattaaaa
aagcctttctgcctattgaaaatgagaaattcaagtttggtagacaaagc
ttatgctttggtgaaaaaaataactatttaactgactactacttattggt
ctttgaaaacagatctaaatattcttgaaaattattttgagttgtactta
tcacatatcaatttctcactctgaagcacatgtgtgtagtcctggcttct
ctcctgccccccaccaatcagcacactgatatttccactgcctactcatt
tccacatggatatctcagatgcagctcaaacttagttcattagaaaccaa
ccccagcatcccgcagctgaatgtctggtgttacatcactgacaaaactg
tgctggattcactgtgtgtttgcacttactgcctgtcagttcttgccaac
tcccatgcatttttctgctagcactgtccaattgaaatacggtgtaagcc
atatatgaaacgttacattatctactagttataatacagatggaaaaaca
aagataaatttgattttaatagttaagtttagtatctcttaacctataca
taagttattattatcttaaaatatggccaatataaattattacctacacc
tctcaattcagaatctaagatttttgtcacaaattctttgttttgtaagt
ctgcagttatataggttcactgacttatttaacactatgcattatttaaa
attcttcatattgaatactgtatcaatgaaaaattatacacaagtaaatt
tgaaattacatacacttcagcattagtctggaatacagtagctatgttca
agatgccccatgcaactactactactggactgaccattatagcctgaata
atctggttatgtcacttttactgctgtcgaagcagggcctctctggtgaa
c

gaattccttaatcatgatttgaaatcagtctctcaattaccatcatcttc
tttaccccatagcttggaagcatgggactaatatttaatatgtttttaaa
tttgacctgatttaatccaagatgctgcacagatataataattcaaatca
agaaatcctaaaaatcacagcaccaaaatgaataaccctaaaggtctatt
ctgaagcgaaagacaagctttcaagttaactgaagtggaaaggttattta
atgttagctttatttgagctccaattaataagtaataaataataatctat
gactcattcacagaattcaaagatcagtgtgtaggaaatatggtgaggat
ttaagtttgagcctaggcacattgatttaaaacttgatacaattgctatg
gtagcattagctttctattaactttcctagtcaaaattaaatcagtacat
acatctttgaagtaataataatttaatttgatgctgtaattaattccatt
ttctgctgtggattttgatattgcaatttattttatgcaaaaaatgctgg
aagaataaggcttctaaaagggggttcaaagagaggtacagatttaattt
ttaattagatttaatgctttcttcacattcttaaatgacttcttgtctct
ctgttaagcttggcacatcacaaagtccaatttgatgttcagttaaaagt
gctgaactatttcaattcatttgcggtcagatgcctattgtatattacat
aaatatactatttatagttagtataggtcactgaaatgcatgtaatgggg
ggaagtttgcatgtggttaatacatttaatattagattatcagtagagca
ttgatacaaaactcatcaatacacaaattctccaaataagtacattaaaa
agaactagataataattactttaacataatttttatttcagtgcagtctc
tgaaaaaacagataactgttgacattctaaaataaataagcccaactttg
taaatgtataacacaatcatcattaatcagaaaattttttctcttttatc
cttaaactatttataagaacttaagaatattaatgtataaacttcctgcc
ctctaagtaagtctgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_90752798_90754005
seq2: B6Ng01-194P19.b_46_1246 (reverse)

seq1  GTTCACC--AGAGGCCATTCATCTACAGCAGTAAAAAGTGACATAACAAG  48
      |||||||  ||||||| | | || |||||||| |||||||||||||| ||
seq2  GTTCACCAGAGAGGCCCTGCTTCGACAGCAGT-AAAAGTGACATAACCAG  49

seq1  AATTATAATCTAAGACTATAATGTTCAGTCCAGTAGTAGGTAGTTGCAT-  97
       |||||    | || |||||||| |||||||||||||| |||||||||| 
seq2  -ATTAT----TCAGGCTATAATGGTCAGTCCAGTAGTA-GTAGTTGCATG  93

seq1  GGGCATCTGAAACATAGCTAACTGTATT-CAGAACCTAATGCTGAAGTGT  146
      ||||||||  ||||||||| |||||||| ||||  |||||||||||||||
seq2  GGGCATCTTGAACATAGCT-ACTGTATTCCAGA--CTAATGCTGAAGTGT  140

seq1  ATGTAATTTC-AATTTACTTGTGTATAAATTTTTCATTGATACAGTATTC  195
      |||||||||| ||||||||||||||| |||||||||||||||||||||||
seq2  ATGTAATTTCAAATTTACTTGTGTAT-AATTTTTCATTGATACAGTATTC  189

seq1  AATTATGAAGAATTTTAAATAATGCATAGTG-TAAATAAGTCAGTGAACC  244
      || |||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AA-TATGAAGAATTTTAAATAATGCATAGTGTTAAATAAGTCAGTGAACC  238

seq1  TATATAACTGCAGACTTTACAAAACAAAGAATTTGTGACAAAAATCTTAG  294
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TATATAACTGCAGAC-TTACAAAACAAAGAATTTGTGACAAAAATCTTAG  287

seq1  ATTCTGAATTGAGAGGTGTAGGTAATAATTTATATTGGCCATATTTTAAG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAATTGAGAGGTGTAGGTAATAATTTATATTGGCCATATTTTAAG  337

seq1  ATAATAATAACTTATGTATAGGTTAAGAGATACTAAACTTAACTATTAAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAATAACTTATGTATAGGTTAAGAGATACTAAACTTAACTATTAAA  387

seq1  ATCAAATTTATCTTTGTTTTTCCATCTGTATTATAACTAGTAGATAATGT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATTTATCTTTGTTTTTCCATCTGTATTATAACTAGTAGATAATGT  437

seq1  AACGTTTCATATATGGCTTACACCGTATTTCAATTGGACAGTGCTAGCAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTTTCATATATGGCTTACACCGTATTTCAATTGGACAGTGCTAGCAG  487

seq1  AAAAATGCATGGGAGTTGGCAAGAACTGACAGGCAGTAAGTGCAAACACA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGCATGGGAGTTGGCAAGAACTGACAGGCAGTAAGTGCAAACACA  537

seq1  CAGTGAATCCAGCACAGTTTTGTCAGTGATGTAACACCAGACATTCAGCT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAATCCAGCACAGTTTTGTCAGTGATGTAACACCAGACATTCAGCT  587

seq1  GCGGGATGCTGGGGTTGGTTTCTAATGAACTAAGTTTGAGCTGCATCTGA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGATGCTGGGGTTGGTTTCTAATGAACTAAGTTTGAGCTGCATCTGA  637

seq1  GATATCCATGTGGAAATGAGTAGGCAGTGGAAATATCAGTGTGCTGATTG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCCATGTGGAAATGAGTAGGCAGTGGAAATATCAGTGTGCTGATTG  687

seq1  GTGGGGGGCAGGAGAGAAGCCAGGACTACACACATGTGCTTCAGAGTGAG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGGGCAGGAGAGAAGCCAGGACTACACACATGTGCTTCAGAGTGAG  737

seq1  AAATTGATATGTGATAAGTACAACTCAAAATAATTTTCAAGAATATTTAG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGATATGTGATAAGTACAACTCAAAATAATTTTCAAGAATATTTAG  787

seq1  ATCTGTTTTCAAAGACCAATAAGTAGTAGTCAGTTAAATAGTTATTTTTT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTTTTCAAAGACCAATAAGTAGTAGTCAGTTAAATAGTTATTTTTT  837

seq1  TCACCAAAGCATAAGCTTTGTCTACCAAACTTGAATTTCTCATTTTCAAT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAAAGCATAAGCTTTGTCTACCAAACTTGAATTTCTCATTTTCAAT  887

seq1  AGGCAGAAAGGCTTTTTTAATGGACTAGGTCCAAGGCGAAAATTATTTTC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAAAGGCTTTTTTAATGGACTAGGTCCAAGGCGAAAATTATTTTC  937

seq1  CTTGATGGGAAAAGTCCACCTTTAAACTGTCTCCATAGAAACCTAGTTAT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATGGGAAAAGTCCACCTTTAAACTGTCTCCATAGAAACCTAGTTAT  987

seq1  AATATGTTCTCCAGTGGTCATAGAGCATTCCCTCCGTAGGAATGAACTGT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTTCTCCAGTGGTCATAGAGCATTCCCTCCGTAGGAATGAACTGT  1037

seq1  ACTGGCTAGACAAGCTCTTCAGCTGGTTTTCAGGAGGCAACTCCTGGTTG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCTAGACAAGCTCTTCAGCTGGTTTTCAGGAGGCAACTCCTGGTTG  1087

seq1  ATGCTGATAAAGAACCCTCCTTTCTGGCTGTGCACAGCTTTAATCCCTGC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGATAAAGAACCCTCCTTTCTGGCTGTGCACAGCTTTAATCCCTGC  1137

seq1  TCTCGGGAGGCAGAGGCACATGGAACTCTGAGTGCCAGGCAGGCCTGGTC  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGGGAGGCAGAGGCACATGGAACTCTGAGTGCCAGGCAGGCCTGGTC  1187

seq1  TACAGAGGGAATTC  1208
      ||||||||||||||
seq2  TACAGAGGGAATTC  1201


seq1: chr17_90627183_90628300
seq2: B6Ng01-194P19.g_61_1177

seq1  GAATTCCTTAATCATGATTTGAAATCAGTCTCTCAATTACCATCATCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAATCATGATTTGAAATCAGTCTCTCAATTACCATCATCTTC  50

seq1  TTTACCCCATAGCTTGGAAGCATGGGACTAATATTTAATATGTTTTTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCCCATAGCTTGGAAGCATGGGACTAATATTTAATATGTTTTTAAA  100

seq1  TTTGACCTGATTTAATCCAAGATGCTGCACAGATATAATAATTCAAATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACCTGATTTAATCCAAGATGCTGCACAGATATAATAATTCAAATCA  150

seq1  AGAAATCCTAAAAATCACAGCACCAAAATGAATAACCCTAAAGGTCTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCCTAAAAATCACAGCACCAAAATGAATAACCCTAAAGGTCTATT  200

seq1  CTGAAGCGAAAGACAAGCTTTCAAGTTAACTGAAGTGGAAAGGTTATTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGCGAAAGACAAGCTTTCAAGTTAACTGAAGTGGAAAGGTTATTTA  250

seq1  ATGTTAGCTTTATTTGAGCTCCAATTAATAAGTAATAAATAATAATCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAGCTTTATTTGAGCTCCAATTAATAAGTAATAAATAATAATCTAT  300

seq1  GACTCATTCACAGAATTCAAAGATCAGTGTGTAGGAAATATGGTGAGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCATTCACAGAATTCAAAGATCAGTGTGTAGGAAATATGGTGAGGAT  350

seq1  TTAAGTTTGAGCCTAGGCACATTGATTTAAAACTTGATACAATTGCTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTTTGAGCCTAGGCACATTGATTTAAAACTTGATACAATTGCTATG  400

seq1  GTAGCATTAGCTTTCTATTAACTTTCCTAGTCAAAATTAAATCAGTACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCATTAGCTTTCTATTAACTTTCCTAGTCAAAATTAAATCAGTACAT  450

seq1  ACATCTTTGAAGTAATAATAATTTAATTTGATGCTGTAATTAATTCCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTTTGAAGTAATAATAATTTAATTTGATGCTGTAATTAATTCCATT  500

seq1  TTCTGCTGTGGATTTTGATATTGCAATTTATTTTATGCAAAAAATGCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTGTGGATTTTGATATTGCAATTTATTTTATGCAAAAAATGCTGG  550

seq1  AAGAATAAGGCTTCTAAAAGGGGGTTCAAAGAGAGGTACAGATTTAATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATAAGGCTTCTAAAAGGGGGTTCAAAGAGAGGTACAGATTTAATTT  600

seq1  TTAATTAGATTTAATGCTTTCTTCACATTCTTAAATGACTTCTTGTCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTAGATTTAATGCTTTCTTCACATTCTTAAATGACTTCTTGTCTCT  650

seq1  CTGTTAAGCTTGGCACATCACAAAGTCCAATTTGATGTTCAGTTAAAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAAGCTTGGCACATCACAAAGTCCAATTTGATGTTCAGTTAAAAGT  700

seq1  GCTGAACTATTTCAATTCATTTGCGGTCAGATGCCTATTGTATATTACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAACTATTTCAATTCATTTGCGGTCAGATGCCTATTGTATATTACAT  750

seq1  AAATATACTATTTATAGTTAGTATAGGTCACTGAAATGCATGTAAT-GGG  799
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AAATATACTATTTATAGTTAGTATAGGTCACTGAAATGCATGTAATGGGG  800

seq1  GGAAGTTTGCATGTGGTTAATACATTTAATATTAGATTATCAGTAGAGCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTTTGCATGTGGTTAATACATTTAATATTAGATTATCAGTAGAGCA  850

seq1  TTGATACAAAACTCATCAATACACAAATTCTCCAAATAAGTACATTAAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATACAAAACTCATCAATACACAAATTCTCCAAATAAGTACATTAAAA  900

seq1  AGAACTAGATAATAATTAC-TTAACATAA-TTTTATTTCAGTGCAGTCTC  947
      ||||||||||||||||||| ||||||||| ||||||||||||||||||||
seq2  AGAACTAGATAATAATTACTTTAACATAATTTTTATTTCAGTGCAGTCTC  950

seq1  TGAAAAAACAGATAACTGTTTGACATTCTAAAATAAATA--GCCAAC-TT  994
      |||||||||||||||||| ||||||||||||||||||||   ||||| ||
seq2  TGAAAAAACAGATAACTG-TTGACATTCTAAAATAAATAAGCCCAACTTT  999

seq1  GTAAATGTATAACACAATCCATCATTTATCAGAAA--TTTTTCTCTTTAA  1042
      |||||||||||||||||| ||||||| ||||||||  ||||||||||| |
seq2  GTAAATGTATAACACAAT-CATCATTAATCAGAAAATTTTTTCTCTTTTA  1048

seq1  TCCTTAAACTATTTATTAAGAACTTTAAGAATTATTAATGTAATTAAACT  1092
      ||||||||||||||| ||||||| ||||||| ||||||||||  ||||||
seq2  TCCTTAAACTATTTA-TAAGAAC-TTAAGAA-TATTAATGTA--TAAACT  1093

seq1  TCTTGCCCTCCTTAGGTAAGTCTGTT  1118
      || |||||||  || |||||||||||
seq2  TCCTGCCCTC--TAAGTAAGTCTGTT  1117


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