BAC Information

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BAC

Clone NameB6Ng01-196D08
Chromosome17 (Build37)
Map Location 19,812,238 - 19,813,356
singlet/doubletsinglet
Overlap geneEG224572
Upstream geneVmn2r-ps115, Vmn2r-ps117, LOC100042183, EG627367, EG224552, LOC665344, LOC627466, LOC627476, EG665371, EG665376, EG627537, EG627576
Downstream geneEG627618, EG627636, LOC100042273, LOC210465, LOC670534, EG627664, V2r7, LOC100041856, EG545190, Fpr-rs7, Fpr-rs6, EG627743, EG224576, V2r6, EG637720, EG665525, EG627805, V1re5, EG627814, EG381065, EG224582, Fpr-rs3, EG433073
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196D08.bB6Ng01-196D08.g
ACCGA018407GA018408
length1,2391,112
definitionB6Ng01-196D08.b B6Ng01-196D08.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctccctatttttgtggatgaaggctggcatggccaatgaaggaac
agagataagagggagggactgagaatagagaatggaggagaagctttaat
caagacataactgttatataatttaaatgaataaaatattaaaaagagaa
taaccctacataacatcattgtttcaagtatagttttccaatctgtttta
ataacttacatgaaaaagcatttgtaacaaaacaaagaaaacaaaataaa
agaacagttattcatttccttcagtaagttggggaactatttcaatgctt
atgaaaatagcagatcatgccctacccttcactgactaaagtactcttta
aagaaggacctgtatctcacagcagtagcacagtagagatgatgctattg
gtgtggacaaagttgagtagcctgtgatgatgtgattatatgatttctgg
ccctgtaatttgttcactgtgcattggtatatggcatggagatatgccaa
taagctccttccttcacaccaactctgtcaggcaagagggcagacatgag
ataatgagagcaagaaaactatccctgtctatccctggatagaacactag
gaaaagcatggccagcatatacccttgtgagtactgaagagttgttcatg
gctgtgcatattgtagaagagataacccttggaacatgagaacagtagtg
ttgactctttctcttgctggttacagcatgaagtaaggtagccaggtcat
agctggggatctctgtctggtggaattggtgtggctcagcaagtacccag
taatagataaaccaataactttgagttgttcctcccacatgttattttat
agtctgttagagtacatgaatggtccagccttgaagatccaagctgcatc
atgtcaatgacacagggagagaacatgatattgcaaagcattcctggtaa
ttatccaaaatccatagtacattacaagccatagaactcagactaaataa
attaatcaatacaatgaacctgtgtaagtaaagaaatgtgggccattttg
ttttgcagtgggaaataaccagccagagtgttcctcctaaaattgagttc
ttatttttttccttttatgatattgggggggaatggttgtattgagaatg
gcctgaaaatgtacatgagtagtgaaactgatctgcctgaatttatgttt
caggatgagaatgtgactaacagcacgacgtctcctgtc
gaattcatttttttccgtaaggttatggttgtcctctgattcttaattta
tttccaatgcttttgacctaaaattttaagtattgtgggagaagaaatat
ttatacaatgaaaccttaatgaaagtttttttttttttcctgtgatcaac
tcactttggcagatgtattaagtaatattattttgttggtatgtatttgg
ggcctttcagagtaaaatgtattttttccacaaaagatattattaaacag
atacagattaatttcagagagtagaacaaagcaagtgtgagttattgagt
tcatacctcccaaaagaatatgagtatatccctttaataacgtgaccata
tggagcatatgagacataaacaagagaacctctttaggtttgctgtttag
ggatctaggcatatgtgaaaataaaacttagaattccagtaggcagatat
gctggtgcaagcctttattctgaatagtgtggaaaaagagaccggtgggt
atttctgagttcaatatcagtctgatgtacacaacaacatacagtcaact
aatatatacagagttgagtaaaggaagcaagcaagtgagcattaaatgaa
tgaaatgcataatgtattagtgcattaatacagaaatatataaacaaata
taatatactataagtaaagtgaatagttaggaatcaaccttatgtttttt
ttacttgaatttattctttctgtactatatacaactgcatgctgtaagag
acatacatgcagacagtctccgatacaaacaccataatatacacaatgat
aaaaatgcaaatgtcaaggcactgtactcatttaatgtcatctattcaga
tacagaagcagccttttctgtttctttctatgacgttagtaattccatgc
tgctatactcatataattatatgagaaaatagctaccagagtcacatgca
aagaaatgaacttcagatattattttagatattgtttttaaaaagttgta
agttgatgaaaaaacggtgggcttttaatatgtgaaacacgaatgtgcct
tctttggagaaaatatctgacttataaaacaggaatgtgtaaacatccat
attgtactataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_19812238_19813356
seq2: B6Ng01-196D08.g_65_1176

seq1  GAATTCATTTTTTTCCGTAAGGTTATGGTTGTCCTCTGATTCTTAATTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTTTTCCGTAAGGTTATGGTTGTCCTCTGATTCTTAATTTA  50

seq1  TTTCCAATGCTTTTGACCTAAAATTTTAAGTATTGTGGGAGAAGAAATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAATGCTTTTGACCTAAAATTTTAAGTATTGTGGGAGAAGAAATAT  100

seq1  TTATACAATGAAACCTTAATGAAAGTTTTTTTTTTTTTCCTGTGATCAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACAATGAAACCTTAATGAAAGTTTTTTTTTTTTTCCTGTGATCAAC  150

seq1  TCACTTTGGCAGATGTATTAAGTAATATTATTTTGTTGGTATGTATTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTGGCAGATGTATTAAGTAATATTATTTTGTTGGTATGTATTTGG  200

seq1  GGCCTTTCAGAGTAAAATGTATTTTTTCCACAAAAGATATTATTAAACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTTCAGAGTAAAATGTATTTTTTCCACAAAAGATATTATTAAACAG  250

seq1  ATACAGATTAATTTCAGAGAGTAGAACAAAGCAAGTGTGAGTTATTGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGATTAATTTCAGAGAGTAGAACAAAGCAAGTGTGAGTTATTGAGT  300

seq1  TCATACCTCCCAAAAGAATATGAGTATATCCCTTTAATAACGTGACCATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACCTCCCAAAAGAATATGAGTATATCCCTTTAATAACGTGACCATA  350

seq1  TGGAGCATATGAGACATAAACAAGAGAACCTCTTTAGGTTTGCTGTTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCATATGAGACATAAACAAGAGAACCTCTTTAGGTTTGCTGTTTAG  400

seq1  GGATCTAGGCATATGTGAAAATAAAACTTAGAATTCCAGTAGGCAGATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTAGGCATATGTGAAAATAAAACTTAGAATTCCAGTAGGCAGATAT  450

seq1  GCTGGTGCAAGCCTTTATTCTGAATAGTGTGGAAAAAGAGACCGGTGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTGCAAGCCTTTATTCTGAATAGTGTGGAAAAAGAGACCGGTGGGT  500

seq1  ATTTCTGAGTTCAATATCAGTCTGATGTACACAACAACATACAGTCAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGAGTTCAATATCAGTCTGATGTACACAACAACATACAGTCAACT  550

seq1  AATATATACAGAGTTGAGTAAAGGAAGCAAGCAAGTGAGCATTAAATGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATACAGAGTTGAGTAAAGGAAGCAAGCAAGTGAGCATTAAATGAA  600

seq1  TGAAATGCATAATGTATTAGTGCATTAATACAGAAATATATAAACAAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGCATAATGTATTAGTGCATTAATACAGAAATATATAAACAAATA  650

seq1  TAATATACTATAAGTAAAGTGAATAGTTAGGAATCAACCTTATGTTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATACTATAAGTAAAGTGAATAGTTAGGAATCAACCTTATGTTTTTT  700

seq1  TTACTTGAATTTATTCTTTCTGTACTATATACAACTGCATGCTGTAAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTGAATTTATTCTTTCTGTACTATATACAACTGCATGCTGTAAGAG  750

seq1  ACATACATGCAGACAGTCTCCGATACAAACACCATAATATACACAATGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATGCAGACAGTCTCCGATACAAACACCATAATATACACAATGAT  800

seq1  AAAAATGCAAATGTCAAGGCACTGTACTCATTTAATGTCATCTATTCAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGCAAATGTCAAGGCACTGTACTCATTTAATGTCATCTATTCAGA  850

seq1  TACAGAAGCAGCCTTTTCTGTTTCTTTCTATGACGTTAGTAATTCCATGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAAGCAGCCTTTTCTGTTTCTTTCTATGACGTTAGTAATTCCATGC  900

seq1  TGCTATACTCATATAATTATATGAGAAAAATAGCTACCAGAGTCACATGC  950
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGCTATACTCATATAATTATATGAG-AAAATAGCTACCAGAGTCACATGC  949

seq1  AAAGAAATGAACTTCAGAATATTATTTAAGATA-TGTTTTTAAAAAGTTG  999
      ||||||||||||||||| ||||||||| ||||| ||||||||||||||||
seq2  AAAGAAATGAACTTCAG-ATATTATTTTAGATATTGTTTTTAAAAAGTTG  998

seq1  TAAAGTTGATGAAAAAAAAGGGTGGG-TTTTTATATGTGAAAACAACAGA  1048
      | |||||||||  |||||| |||||| |||| ||||||||||   ||  |
seq2  T-AAGTTGATG--AAAAAACGGTGGGCTTTTAATATGTGAAA--CACGAA  1043

seq1  TGTGC--TCTTTGGAGGAAAATAATTCCTGACTTAT-AAACA-GAATGTG  1094
      |||||  |||||||| |||||||    ||||||||| ||||| |||||||
seq2  TGTGCCTTCTTTGGA-GAAAATA---TCTGACTTATAAAACAGGAATGTG  1089

seq1  TAAACAATCAATATATGTACTATAA  1119
      ||||| ||| |||| ||||||||||
seq2  TAAAC-ATCCATAT-TGTACTATAA  1112