BAC Information

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BAC

Clone NameB6Ng01-196G18
Chromosome17 (Build37)
Map Location 78,564,751 - 78,565,722
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC545234, LOC100043887, LOC668795
Downstream geneLOC383275, Crim1, Fez2, LOC100043888, Hdac1-ps, Vit, Strn, Heatr5b, 2310002B06Rik, EG625054, Eif2ak2, 2410078J06Rik, Cebpz, 2410091C18Rik, Prkcn, LOC675425, Qpct, LOC668812
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196G18.bB6Ng01-196G18.g
ACCGA018569GA018570
length957768
definitionB6Ng01-196G18.b B6Ng01-196G18.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gattcacatatctatgaatgtctagtaattgatatatttatctttcatga
ttctcctcagtagagtataaatgcattctaaacatttctggtaaaaacaa
ttccatggttattttaacatttcttgtacagatttatatttccaagtaat
acttcttgagatgttggacttgttgaatttagtatttcatttcttttcaa
tttatctccttgactcaagaagtggctgccagtccaatagaaatttttaa
aagtattgttattgctcacattaacttctaagagatattgtgtaattttg
aggttaaagtacttgcttctgttataagaaacacactagtggtttccaaa
atgatatcctgtcctgggctccagttcccttgtaatattgtggagaaagt
catgctaaaagtctattaagtctacttcatgtgggatgagaaaaatgaat
ttcatctttcattttttttaaaaaaaatgggcaatgcatgtatccagttc
attaaaagacaaagggatttcctaataatttggagagaaactagaatttg
tacccagatcactaaaaccaacccagccaaccaaccaaaaaccccaccct
ctcattatgaaagtgaaagggctagttagaaggcataaagcaatcagaaa
tgaagtcaggagaggaagggcaatagaaaaataaacatgtgcaaaatatt
tcatctatgtgtatgaaatgtcacggtgaaacacatattatgtgtgatta
agtatgttcccataaaacaaaatgtatattgattaatatgccataccaca
tggtcatgatcccatttatccatttcaattatttatcaaaagatctcaca
atcttccttaccattgtttcatgcatagctaggatgcagtgtggcactca
atttaaagtgggattactggagtatgcatgtgagtcatgtcccagtcaga
ctgccct
ttcactcatctccaatagagaaaaaaatatatcagatcaggtttcaggac
caggtgtcctttccagaaggtgggaaaattaacaaacgatactgctgcca
aggccagagcccacctctgatggcttggaaagtgactcgaagacacatgg
ttagaacttgggctcctagtcaagcccctggtccagctgcatggctccaa
gttggcatgaaagtaggagacacctggaaaatcaaggcaaaatcaaaaca
catctctcggttaagaggaaatcaggcgtgatgttggctaggaaaggaca
gattcgctggacagctgcctggaatggaagttgtcccttggcatctgagg
tacactcacgctttatctctgaggtacgggtcactcggtcattcaggtct
tattgttggagaaatcgacttttgcactatttgaagttatcccaagacta
gggtagaggatgattaaggaacgatgaagaaccggtccaggctgaaacta
tcataaagcctctagattcaaccacattcttggaggggttcgactatctc
ggactcgtccctcgatctggcttgactgtcgccaatacatgtgcctaaat
atatatcccacacgtttgtgataatttccgaccatacttgattagattcc
gccagtccaacgactcgccacgctaccattgatacttgttttaagaacct
atgaagagcagttttcctctccctcactgtatattcagcagtaagactcg
gcgttcacttacatgtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_78564751_78565722
seq2: B6Ng01-196G18.b_44_999 (reverse)

seq1  AGGGCATGTCTGACCTTGTGACATGACTCACCATGCATTACCTCAGTAAA  50
      |||||| |||||||  || ||||||||||| |||||| |||  |||||| 
seq2  AGGGCA-GTCTGAC--TGGGACATGACTCA-CATGCA-TACTCCAGTAA-  44

seq1  ATTCCCCACTTTAAAATGAGTGCCACACCTGCAT-CTAGCTATGCATTGA  99
          ||||||||||| ||||||||||| |||||| ||||||||||| |||
seq2  ---TCCCACTTTAAATTGAGTGCCACA-CTGCATCCTAGCTATGCA-TGA  89

seq1  AAACAAATGGTTAAGGAAGATTTGTGAAGATCTTTTTGATAAATAATTTG  149
      ||   ||||| ||||||||| ||||| ||||| ||||||||||||| |||
seq2  AA--CAATGG-TAAGGAAGA-TTGTG-AGATC-TTTTGATAAATAA-TTG  132

seq1  AAATGGGATAAAATGGGATCATGACCATTGTTGGTATGGCATATTTAATC  199
      |||| |||| ||||||||||||||||||   |||||||||||| ||||||
seq2  AAAT-GGAT-AAATGGGATCATGACCAT--GTGGTATGGCATA-TTAATC  177

seq1  AATATACATTTTTGTTTTATGGGAACATACTTAATCACACATAATAATGT  249
      |||||||| |||||||||||||||||||||||||||||||||||| ||||
seq2  AATATACA-TTTTGTTTTATGGGAACATACTTAATCACACATAAT-ATGT  225

seq1  GTTTCACCGTGACATTTCATACACATAGATGAAATATTTTGCACATGTTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCACCGTGACATTTCATACACATAGATGAAATATTTTGCACATGTTT  275

seq1  A-TTTTCTATTGCCCTTCCTTCTCCTGACTTCATTTCTGATTGCTTTATG  348
      | ||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATTTTTCTATTGCCCTTCC-TCTCCTGACTTCATTTCTGATTGCTTTATG  324

seq1  CCTTCTAACTAGCCCTTTCACTTTCATAATGAGA-GGTGGGGTTTTTGGT  397
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CCTTCTAACTAGCCCTTTCACTTTCATAATGAGAGGGTGGGGTTTTTGGT  374

seq1  TGGTTGGCT-GGTTGGTTTTAGTGATCTGGGTACAAATTCTAGTTTCTCT  446
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGGCTGGGTTGGTTTTAGTGATCTGGGTACAAATTCTAGTTTCTCT  424

seq1  CCAAATTAT--AGAAAT-CCTTTGTCTTTTAATGAACTGGATACATGCAT  493
      |||||||||   ||||| ||||||||||||||||||||||||||||||||
seq2  CCAAATTATTAGGAAATCCCTTTGTCTTTTAATGAACTGGATACATGCAT  474

seq1  TGCCCATTTTTTTTAAAAAAAATG-AAGATG-AATTCA-TTTTCTCATCC  540
      |||||||||||||||||||||||| |||||| |||||| |||||||||||
seq2  TGCCCATTTTTTTTAAAAAAAATGAAAGATGAAATTCATTTTTCTCATCC  524

seq1  CACATGAAGTAGACTTAATAGACTTTTAGCATGACTTTCTCCACAATATT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGAAGTAGACTTAATAGACTTTTAGCATGACTTTCTCCACAATATT  574

seq1  ACAAGGGAACTGGAGCCCAGGACAGGATATCATTTTGGAAACCACTAGTG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGGAACTGGAGCCCAGGACAGGATATCATTTTGGAAACCACTAGTG  624

seq1  TGTTTCTTATAACAGAAGCAAGTACTTTAACCTCAAAATTACACAATATC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTTATAACAGAAGCAAGTACTTTAACCTCAAAATTACACAATATC  674

seq1  TCTTAGAAGTTAATGTGAGCAATAACAATACTTTTAAAAATTTCTATTGG  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGAAGTTAATGTGAGCAATAACAATACTTTTAAAAATTTCTATTGG  724

seq1  ACTGGCAGCCACTTCTTGAGTCAAGGAGATAAATTGAAAAGAAATGAAAT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCAGCCACTTCTTGAGTCAAGGAGATAAATTGAAAAGAAATGAAAT  774

seq1  ACTAAATTCAACAAGTCCAACATCTCAAGAAGTATTACTTGGAAATATAA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAATTCAACAAGTCCAACATCTCAAGAAGTATTACTTGGAAATATAA  824

seq1  ATCTGTACAAGAAATGTTAAAATAACCATGGAATTGTTTTTACCAGAAAT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTACAAGAAATGTTAAAATAACCATGGAATTGTTTTTACCAGAAAT  874

seq1  GTTTAGAATGCATTTATACTCTACTGAGGAGAATCATGAAAGATAAATAT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGAATGCATTTATACTCTACTGAGGAGAATCATGAAAGATAAATAT  924

seq1  ATCAATTACTAGACATTCATAGATATGTGAAT  972
      ||||||||||||||||||||||||||||||||
seq2  ATCAATTACTAGACATTCATAGATATGTGAAT  956