BAC Information

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BAC

Clone NameB6Ng01-196L13
Chromosome17 (Build37)
Map Location 7,419,195 - 7,545,323
singlet/doubletdoublet
Overlap geneRps6ka2, LOC625031, Tcp10b, LOC100038857
Upstream geneDynlt1, LOC547127, LOC100040488, LOC100040500, LOC100040531, LOC100040525, LOC100040563, LOC100040546, LOC100040536, LOC100040556, LOC100040603, LOC100040596, LOC100040631, LOC100040616, Sytl3, Vil2, LOC100040654, Rshl2b, 1700122H20Rik, Tagap1, Rnaset2b, Gm1604
Downstream geneLOC667055, 5830477G23Rik, LOC625102, Fndc1, EG634588, LOC100040748, LOC100040760, LOC667102, Tagap, Rshl2a, LOC100040822, Rnaset2a, Fgfr1op, Ccr6, LOC667114, Brp44l, Sft2d1, LOC100038858, 9630019K15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196L13.bB6Ng01-196L13.g
ACCGA018783GA018784
length9081,152
definitionB6Ng01-196L13.b B6Ng01-196L13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,544,416 - 7,545,323)(7,419,195 - 7,420,323)
sequence
gaattctctcactaatgcaaaataagatcactcacacacacactcacaca
cacacacacacacacacaccacacacaaacacacacacctatttcagacc
cagtagcatggggaggactccaaatatcagatgtcactaaaatcagatca
gaactgacgcttccaatgctctggtactgtttgatgatcatagcgtccac
aaggctcatctttatagatacactgatacaggatcaacatctgtgtctac
agattgcgcctgagcgtgggctcaaaataccagtctcaaagaagggtgaa
ccagaaacaaaaacagaaacagacaaacaaacaaccctccaaaacctagc
aaaaccaaactacctgttgtcagctgctgatcaccaaggatactcctact
ttctctgagttctctctcgagaatctgtagcaatggccctgaagtgggtt
cggcatagccaatctccttacctgctgggtctaggatactctacattaga
aaactaacatgatctggggatccatcccataatcagtttccaaacgctga
caccattgcatacactagcaagattttgctgaaaggacccagatagagct
gtctcttatgagactatgccggggcctagcaaatacagaagtggatgctt
acaatcagctattggatggatcacagggcccccaatggaggagctagaga
aagtacccaaggagctaaagggatctgcaaccctgtaggttcaacattat
gaactaaccagtaccccggagctcttgactctagctgcatatgtatcaaa
agatggcctagtcggccatcactggaaagagaggcccattggtcgtgcaa
actttatatgccttagtacaggggaacgccagggccaagaagtgggagcg
ggtgggtg
gaattcaatgacctggggtgggggtggggcgtagaaggtgctggctgtga
ggtgcagtcctggcagggaactgagtgtgtacagttctagctccgagtat
cctcacaggcactgatgggcccagtctgggcagcattgatctttcatgat
ctctaggctaactgctcacggattaattttagcatcaggagagctggctt
cccctttgtgcaaccccattgtttaaaatcccattgtaggggagccataa
atggtgcctttagtaagatttctgtagaaaactcgttttccttttcttta
atgtcagaggtttgccaaaagggtcttttgagaggcagtgaaacgaaccc
attgttacacaagaggcaagggctgtgtagtcaagctgaggttctaacat
tgtgatgaggagaagaacctgtttacctcacataagctctgagacgcagt
ctcagcagtgcgcccttgtctggttgctcccactggccacccctaccccc
gcctttgctttggctccccagcatattctaggtgctcatcttagtttgtt
cttgcttctaacaggctcaattctcaggtccaattcacaaagaaatccca
gagctagtttgggtgtgagtcccttttccatctgtcatggcagtttccct
gggccatccagcctgagtgcactggggggagctccccttgcagatagatc
ccacatgttgaaacatcaggcatcgctgtatgtctccactagagtgacct
ggaggcagagaacgcgttatctttggggatagcctgcgacagtgatttca
gccgaggctgataggtagtactggccgatgtctttggctctccctgtagc
cctggtgctactgatcaccctgagggcaggcactgccagcttcttcactt
taccttcagtttgagaagcgaattttgtggccttcactgcctatttaatg
aatggtgccacacacgatgtgttgtaacatatgtggtccactacttacat
atggtcctgtgcactgcctgcttatcagcctctcggcccttcttacatga
gtccctccgtaagcaatctgactgcttgaccatgtgaagtcctctgtagt
ccgctcagttcatattctgtgccctttgcaagaagccagcatctgactct
ca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_7544416_7545323
seq2: B6Ng01-196L13.b_43_950 (reverse)

seq1  CACCCACCCGCTCCCACTTCTTGGCCCTGGCGTTCCCCTGTACTAAGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACCCGCTCCCACTTCTTGGCCCTGGCGTTCCCCTGTACTAAGGCA  50

seq1  TATAAAGTTTGCACGACCAATGGGCCTCTCTTTCCAGTGATGGCCGACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGTTTGCACGACCAATGGGCCTCTCTTTCCAGTGATGGCCGACTA  100

seq1  GGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTG  150

seq1  GTTAGTTCATAATGTTGAACCTACAGGGTTGCAGATCCCTTTAGCTCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTTCATAATGTTGAACCTACAGGGTTGCAGATCCCTTTAGCTCCTT  200

seq1  GGGTACTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGATCCATCCAATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTACTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGATCCATCCAATAG  250

seq1  CTGATTGTAAGCATCCACTTCTGTATTTGCTAGGCCCCGGCATAGTCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTGTAAGCATCCACTTCTGTATTTGCTAGGCCCCGGCATAGTCTCA  300

seq1  TAAGAGACAGCTCTATCTGGGTCCTTTCAGCAAAATCTTGCTAGTGTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGACAGCTCTATCTGGGTCCTTTCAGCAAAATCTTGCTAGTGTATG  350

seq1  CAATGGTGTCAGCGTTTGGAAACTGATTATGGGATGGATCCCCAGATCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGTGTCAGCGTTTGGAAACTGATTATGGGATGGATCCCCAGATCAT  400

seq1  GTTAGTTTTCTAATGTAGAGTATCCTAGACCCAGCAGGTAAGGAGATTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTTTTCTAATGTAGAGTATCCTAGACCCAGCAGGTAAGGAGATTGG  450

seq1  CTATGCCGAACCCACTTCAGGGCCATTGCTACAGATTCTCGAGAGAGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCCGAACCCACTTCAGGGCCATTGCTACAGATTCTCGAGAGAGAAC  500

seq1  TCAGAGAAAGTAGGAGTATCCTTGGTGATCAGCAGCTGACAACAGGTAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGAAAGTAGGAGTATCCTTGGTGATCAGCAGCTGACAACAGGTAGT  550

seq1  TTGGTTTTGCTAGGTTTTGGAGGGTTGTTTGTTTGTCTGTTTCTGTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTTGCTAGGTTTTGGAGGGTTGTTTGTTTGTCTGTTTCTGTTTTT  600

seq1  GTTTCTGGTTCACCCTTCTTTGAGACTGGTATTTTGAGCCCACGCTCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGGTTCACCCTTCTTTGAGACTGGTATTTTGAGCCCACGCTCAGG  650

seq1  CGCAATCTGTAGACACAGATGTTGATCCTGTATCAGTGTATCTATAAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAATCTGTAGACACAGATGTTGATCCTGTATCAGTGTATCTATAAAGA  700

seq1  TGAGCCTTGTGGACGCTATGATCATCAAACAGTACCAGAGCATTGGAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCTTGTGGACGCTATGATCATCAAACAGTACCAGAGCATTGGAAGC  750

seq1  GTCAGTTCTGATCTGATTTTAGTGACATCTGATATTTGGAGTCCTCCCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTTCTGATCTGATTTTAGTGACATCTGATATTTGGAGTCCTCCCCA  800

seq1  TGCTACTGGGTCTGAAATAGGTGTGTGTGTTTGTGTGTGGTGTGTGTGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACTGGGTCTGAAATAGGTGTGTGTGTTTGTGTGTGGTGTGTGTGTG  850

seq1  TGTGTGTGTGTGTGAGTGTGTGTGTGAGTGATCTTATTTTGCATTAGTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGAGTGTGTGTGTGAGTGATCTTATTTTGCATTAGTGA  900

seq1  GAGAATTC  908
      ||||||||
seq2  GAGAATTC  908

seq1: chr17_7419195_7420323
seq2: B6Ng01-196L13.g_65_1216

seq1  GAATTCAATGACCTGGGGTGGGGGTGGGGCGTAGAAGGTGCTGGCTGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGACCTGGGGTGGGGGTGGGGCGTAGAAGGTGCTGGCTGTGA  50

seq1  GGTGCAGTCCTGGCAGGGAACTGAGTGTGTACAGTTCTAGCTCCGAGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCAGTCCTGGCAGGGAACTGAGTGTGTACAGTTCTAGCTCCGAGTAT  100

seq1  CCTCACAGGCACTGATGGGCCCAGTCTGGGCAGCATTGATCTTTCATGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACAGGCACTGATGGGCCCAGTCTGGGCAGCATTGATCTTTCATGAT  150

seq1  CTCTAGGCTAACTGCTCACGGATTAATTTTAGCATCAGGAGAGCTGGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGGCTAACTGCTCACGGATTAATTTTAGCATCAGGAGAGCTGGCTT  200

seq1  CCCCTTTGTGCAACCCCATTGTTTAAAATCCCATTGTAGGGGAGCCATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTTGTGCAACCCCATTGTTTAAAATCCCATTGTAGGGGAGCCATAA  250

seq1  ATGGTGCCTTTAGTAAGATTTCTGTAGAAAACTCGTTTTCCTTTTCTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGCCTTTAGTAAGATTTCTGTAGAAAACTCGTTTTCCTTTTCTTTA  300

seq1  ATGTCAGAGGTTTGCCAAAAGGGTCTTTTGAGAGGCAGTGAAACGAACCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAGAGGTTTGCCAAAAGGGTCTTTTGAGAGGCAGTGAAACGAACCC  350

seq1  ATTGTTACACAAGAGGCAAGGGCTGTGTAGTCAAGCTGAGGTTCTAACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTACACAAGAGGCAAGGGCTGTGTAGTCAAGCTGAGGTTCTAACAT  400

seq1  TGTGATGAGGAGAAGAACCTGTTTACCTCACATAAGCTCTGAGACGCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATGAGGAGAAGAACCTGTTTACCTCACATAAGCTCTGAGACGCAGT  450

seq1  CTCAGCAGTGCGCCCTTGTCTGGTTGCTCCCACTGGCCACCCCTACCCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCAGTGCGCCCTTGTCTGGTTGCTCCCACTGGCCACCCCTACCCCC  500

seq1  GCCTTTGCTTTGGCTCCCCAGCATATTCTAGGTGCTCATCTTAGTTTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTGCTTTGGCTCCCCAGCATATTCTAGGTGCTCATCTTAGTTTGTT  550

seq1  CTTGCTTCTAACAGGCTCAATTCTCAGGTCCAATTCACAAAGAAATCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTCTAACAGGCTCAATTCTCAGGTCCAATTCACAAAGAAATCCCA  600

seq1  GAGCTAGTTTGGGTGTGAGTCCCTTTTCCATCTGTCATGGCAGTTTCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTAGTTTGGGTGTGAGTCCCTTTTCCATCTGTCATGGCAGTTTCCCT  650

seq1  GGGCCATCCAGCCTGAGTGCACTGGGGGGAGCTCCCCTTGCAGATAGATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCATCCAGCCTGAGTGCACTGGGGGGAGCTCCCCTTGCAGATAGATC  700

seq1  CCACATGTTGAAACATCAGGCATCGCTGTATGTCTCCACTAGAGTGACCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATGTTGAAACATCAGGCATCGCTGTATGTCTCCACTAGAGTGACCT  750

seq1  GGAGGCAGAGAACGCGTTATCTTTGGGGATAGCCTGCGACAGTGA-TTCA  799
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GGAGGCAGAGAACGCGTTATCTTTGGGGATAGCCTGCGACAGTGATTTCA  800

seq1  GCCGAGGCTGATAGGTAGTACTGGCCGATGTCTTTGGCTCTCCCTGTAGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGAGGCTGATAGGTAGTACTGGCCGATGTCTTTGGCTCTCCCTGTAGC  850

seq1  CCTGGTGCTACTGATCACCCTGAGGGCAGGCACTG-CAGCTTCTTCACTT  898
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CCTGGTGCTACTGATCACCCTGAGGGCAGGCACTGCCAGCTTCTTCACTT  900

seq1  TACC-TCAG-TTGAGAAGCGA--TTTGTTGGCTTCACTG-CTATTT-ATG  942
      |||| |||| |||||||||||  ||||| | |||||||| |||||| |||
seq2  TACCTTCAGTTTGAGAAGCGAATTTTGTGGCCTTCACTGCCTATTTAATG  950

seq1  AAT-GTG-CACACACGGATGTG-TGT-ACATATGTGGT-CACTACTTACA  987
      ||| ||| ||||||| |||||| ||| ||||||||||| |||||||||||
seq2  AATGGTGCCACACAC-GATGTGTTGTAACATATGTGGTCCACTACTTACA  999

seq1  T---GTCCTGTGCACTGCCTGCTTATCAGCCTCTCGGCCCTTCTTACCAT  1034
      |   |||||||||||||||||||||||||||||||||||||||||| |||
seq2  TATGGTCCTGTGCACTGCCTGCTTATCAGCCTCTCGGCCCTTCTTA-CAT  1048

seq1  GAGTTCCT-CGTAAGCAAATTGACTGCTTGGCCATGTGAAG-CCTCTGTA  1082
      |||| ||| |||||||||  |||||||||| |||||||||| ||||||||
seq2  GAGTCCCTCCGTAAGCAATCTGACTGCTTGACCATGTGAAGTCCTCTGTA  1098

seq1  GTCCG--CAGTTCATA-TCTG---CCCTTGCGAGGAGGCAGCATCTG-CT  1125
      |||||  ||||||||| ||||   || |||| || || ||||||||| ||
seq2  GTCCGCTCAGTTCATATTCTGTGCCCTTTGCAAGAAGCCAGCATCTGACT  1148

seq1  CTCA  1129
      ||||
seq2  CTCA  1152