BAC Information

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BAC

Clone NameB6Ng01-199H18
Chromosome17 (Build37)
Map Location 89,960,691 - 89,961,818
singlet/doubletsinglet
Overlap genenone
Upstream geneCcdc128, LOC668866, Gtf2a1lf, Lhcgr, LOC668867, Fshr, LOC100043904
Downstream geneLOC100043906, Nrxn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199H18.bB6Ng01-199H18.g
ACCGA020807GA020808
length1,1741,137
definitionB6Ng01-199H18.b B6Ng01-199H18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagt
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacttggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtatggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcttccaaatgctgacaccattgcatacactagcaagatttttactgaa
aggacccagatgtagcttgtctcttgtgagactatgccggggcctagcaa
acacagaagtggatgctcacagtcagctaatggatggatcacagggctcc
caatgagagctagagaaagtacccagagctaaagggatcttcacctatag
gtgaacacatatgaactaccagtaccctgagctctgactctagctgcata
tgtatcaaagatggctagttcgcatcactgaagagagtccatgacacgca
gactttgtgtgccctgtacagtggacgcaggcaacgggggtaattgggct
gaatacgcgtactccatcatcatc
gaattctcttcaataacttcctgtctagactgtttcttttggcagggggt
gtcataagcaagagtattcttgcaaccattctttactaagttcacaagtg
atatatttggtgatcatttcctttttaaaaatacttcttttgtttttgag
attataatgtaaatacagaatatcttctttccctttccttcctctaacct
gctcccactacctaccctccttgaaatcatcaaattgaaagtttctttct
tcagtaagtatttttatataaatacaagctgcttaatctgtatgttactt
atatgtatatcttcaaggtgaggcatttgatattggttcaccaattaact
tgctttctcctgagatcactgaagaggttagttgtatatagttatttcta
tagagtaaagtggacaggaaaagtccagctggcctttacacacacacaca
cacacacacacacacacacacacacacacaaaaagaactacatacaacta
aggaattctaagagagggtcatttacttttgaaaagttctcataatacag
catatattcaggaaatgtgacatgtcagtagcctaagattgataatactc
ttagatatcatgctatttgaatccccaaattatttctcttttccctattc
ccatataacatttcctaacttaaacaactgggtttttatatgtgtagata
catctgaaccaaaaaaataaataatttcttgctttccacctgcagcatcc
ttcatatatatcatacattaggtggaatgtagtaatggatagtcttagga
agtgtggtgagtgattctgagacatgaggttattagtccaattttacaga
ataatatatgaaaggcatttttgaagttcctgaatagttcatatgacaca
gagaaacattttgctttatttgaaagcactttccagatcacttcaaagaa
tcttggggttaccacgcagcattagcttggaggtgttagacacaggctta
aaggaaccttcctacccttgaacagaaagttgagtttctgcagttcatct
agctgcaggaaggcctgtcagaaatgagaatgatattcattattcctgtt
ggagatatcctaatgtacactggcgttagctttagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_89960691_89961818
seq2: B6Ng01-199H18.g_64_1200 (reverse)

seq1  TCCTAAAAGCT-ACGCAGTTGTACATTAAGAATATCTCAAAACAGGGAAA  49
      |||| |||||| ||||   |||||||| || |||||||  ||||||  ||
seq2  TCCT-AAAGCTAACGCCAGTGTACATT-AGGATATCTC-CAACAGG--AA  45

seq1  TAATGATTATCATTTCTCATTTCTTGACAGGCCTTCCTGCAGCTAGATGA  99
      |||||| ||||| |||||||||| ||||||||||||||||||||||||||
seq2  TAATGAATATCA-TTCTCATTTC-TGACAGGCCTTCCTGCAGCTAGATGA  93

seq1  ACTGGCAG-AACTC-ACTTTCTGGTTTCAA-GGTAGG-AGGT--CCTTAA  143
      ||| |||| ||||| ||||||||  ||||| |||||| ||||  | ||||
seq2  ACT-GCAGAAACTCAACTTTCTG--TTCAAGGGTAGGAAGGTTCCTTTAA  140

seq1  GCCTGTCT---ACAC--TCAAGCT-ATGCTGCGTGGTAA-CCCAAGAT--  184
      |||||| |   ||||   |||||| |||||||||||||| ||||||||  
seq2  GCCTGTGTCTAACACCTCCAAGCTAATGCTGCGTGGTAACCCCAAGATTC  190

seq1  CTTGAAGTGATCTGGAAAGTGCTTTC-AATAAAGC-AAATGTTTCTCTGT  232
       ||||||||||||||||||||||||| |||||||| ||||||||||||||
seq2  TTTGAAGTGATCTGGAAAGTGCTTTCAAATAAAGCAAAATGTTTCTCTGT  240

seq1  GTCATATGAACTATTCAGGAACTTCAAAAATGCC-TTCATATATTATTCT  281
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GTCATATGAACTATTCAGGAACTTCAAAAATGCCTTTCATATATTATTCT  290

seq1  GTAAAATTTGAACTAATAACCTCATGTCTCAGAATCACTCACCACACTTC  331
      |||||| ||| |||||||||||||||||||||||||||||||||||||||
seq2  GTAAAA-TTGGACTAATAACCTCATGTCTCAGAATCACTCACCACACTTC  339

seq1  CTAAGACTATCCATTACTACATTCCACCTAATGTATGATATATATGAAGG  381
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGACTATCCATTACTACATTCCACCTAATGTATGATATATATGAAGG  389

seq1  ATGCTGCAGGTGGAAAGCAAGAAATTA-TTATTTTTTTGGTTCAGATGTA  430
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATGCTGCAGGTGGAAAGCAAGAAATTATTTATTTTTTTGGTTCAGATGTA  439

seq1  TCTACACATATAAAAACCCAGTTGTTTAAGTTAGGAAATGTTATATGGGA  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACACATATAAAAACCCAGTTGTTTAAGTTAGGAAATGTTATATGGGA  489

seq1  ATAGGGAAAAGAGAAATAATTTGGGGATTCAAATAGCATGATATCTAAGA  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGAAAAGAGAAATAATTTGGGGATTCAAATAGCATGATATCTAAGA  539

seq1  GTATTATCAATCTTAGGCTACTGACATGTCACATTTCCTGAATATATGCT  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTATCAATCTTAGGCTACTGACATGTCACATTTCCTGAATATATGCT  589

seq1  GTATTATGAGAACTTTTCAAAAGTAAATGACCCTCTCTTAGAATTCCTTA  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTATGAGAACTTTTCAAAAGTAAATGACCCTCTCTTAGAATTCCTTA  639

seq1  GTTGTATGTAGTTCTTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTATGTAGTTCTTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  689

seq1  TGTGTGTGTGTAAAGGCCAGCTGGACTTTTCCTGTCCACTTTACTCTATA  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTAAAGGCCAGCTGGACTTTTCCTGTCCACTTTACTCTATA  739

seq1  GAAATAACTATATACAACTAACCTCTTCAGTGATCTCAGGAGAAAGCAAG  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAACTATATACAACTAACCTCTTCAGTGATCTCAGGAGAAAGCAAG  789

seq1  TTAATTGGTGAACCAATATCAAATGCCTCACCTTGAAGATATACATATAA  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGGTGAACCAATATCAAATGCCTCACCTTGAAGATATACATATAA  839

seq1  GTAACATACAGATTAAGCAGCTTGTATTTATATAAAAATACTTACTGAAG  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACATACAGATTAAGCAGCTTGTATTTATATAAAAATACTTACTGAAG  889

seq1  AAAGAAACTTTCAATTTGATGATTTCAAGGAGGGTAGGTAGTGGGAGCAG  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAACTTTCAATTTGATGATTTCAAGGAGGGTAGGTAGTGGGAGCAG  939

seq1  GTTAGAGGAAGGAAAGGGAAAGAAGATATTCTGTATTTACATTATAATCT  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAGGAAGGAAAGGGAAAGAAGATATTCTGTATTTACATTATAATCT  989

seq1  CAAAAACAAAAGAAGTATTTTTAAAAAGGAAATGATCACCAAATATATCA  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACAAAAGAAGTATTTTTAAAAAGGAAATGATCACCAAATATATCA  1039

seq1  CTTGTGAACTTAGTAAAGAATGGTTGCAAGAATACTCTTGCTTATGACAC  1080
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGAACTTAGTAAAGAATGGTTGCAAGAATACTCTTGCTTATGACAC  1089

seq1  CCCCTGCCAAAAGAAACAGTCTAGACAGGAAGTTATTGAAGAGAATTC  1128
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGCCAAAAGAAACAGTCTAGACAGGAAGTTATTGAAGAGAATTC  1137