BAC Information

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BAC

Clone NameB6Ng01-199O16
Chromosome17 (Build37)
Map Location 68,434,341 - 68,547,970
singlet/doubletdoublet
Overlap genenone
Upstream genePtprm, Lrrc30, Lama1, Arhgap28
Downstream geneD930040M24Rik, EG622645, Epb4.1l3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199O16.bB6Ng01-199O16.g
ACCGA021123GA021124
length1,044242
definitionB6Ng01-199O16.b B6Ng01-199O16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,434,341 - 68,435,314)(68,547,729 - 68,547,970)
sequence
gaattctctatttagctttgtgccccatttcttaattgtgttatttgggt
tgttggtatttaatgtcctgagttgttatttatttatttatttatttatt
tatttatttataaaattgtggatattagccctctgtcatatgtagggttg
tgaagttcctttccaaatttgtagctgctgttttgtcttattgacattgt
cttttgccttacataggctttgcagtttcatgaggtccaatttatcaatt
attaatctgagagcctgagccattcatattctgttcaaaaaaattgtctc
ctttaccaatgcattcaagggtatttcttactttctcttctatgagattc
agtatatcaggttttatattgacgtacttgatccactctgacttaaggtt
tgtgcagcattataactatagatctattttcattctttcattttcattca
ggtagacattcagttagaccagcaccattggttaaagatgctttcttttt
tccattgtatggttttgacttctttatgaaaaatcaaatgtccataagtg
tatgggtttatttctgggttgaagaggatactgttaatttggaaatttct
gtgacaagcaaacaataaagttgatgagtgtgtgcaaagatgacagccaa
aatgacaagtcactttagaaaaattctgagagattacaaaaaacaaacaa
acaaaaaactagatctgatcagaagtaccaaatatggtgcaagactacaa
ttttctgcttaagtgtgtgtgacttacctcaacagaagatagcctgggac
agtgtgaaatcctgaggggataaaaatactcattaaagaaaatcaacaac
ataataagaacaagcaaacacctttaagcaaacctttgcaaatgaaacat
gcaaattgtatctaaacacattaaaagattcccctacctcttcacgttct
ttgctttgacaatgtttgttttgtttttaaatcactgcatatgtgatatt
gagtttacctaagaaatcttccagccaatagatatttgtttgtt

ttagataggtatatttgttaatttgtttgcaaggtatggaaacaatcatt
tctgtcttgggaggtcagtatgacgatcatttggtttggttggtgttgaa
taggacagcaatattcttgccagaactaactctatatgacattcagcatc
cctaaggcgtgtgatatggcttgataattgaggaggttatatacacgcac
ttgtgtgtttgtgtgtggtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_68434341_68435314
seq2: B6Ng01-199O16.b_113_1087

seq1  GAGTTGTTATTTATTTATTTATTTATTTATTTATTTATTTATAAAATTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGTTATTTATTTATTTATTTATTTATTTATTTATTTATAAAATTGT  50

seq1  GGATATTAGCCCTCTGTCATATGTAGGGTTGTGAAGTTCCTTTCCAAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATTAGCCCTCTGTCATATGTAGGGTTGTGAAGTTCCTTTCCAAATT  100

seq1  TGTAGCTGCTGTTTTGTCTTATTGACATTGTCTTTTGCCTTACATAGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCTGCTGTTTTGTCTTATTGACATTGTCTTTTGCCTTACATAGGCT  150

seq1  TTGCAGTTTCATGAGGTCCAATTTATCAATTATTAATCTGAGAGCCTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGTTTCATGAGGTCCAATTTATCAATTATTAATCTGAGAGCCTGAG  200

seq1  CCATTCATATTCTGTTCAAAAAAATTGTCTCCTTTACCAATGCATTCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCATATTCTGTTCAAAAAAATTGTCTCCTTTACCAATGCATTCAAG  250

seq1  GGTATTTCTTACTTTCTCTTCTATGAGATTCAGTATATCAGGTTTTATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTTCTTACTTTCTCTTCTATGAGATTCAGTATATCAGGTTTTATAT  300

seq1  TGACGTACTTGATCCACTCTGACTTAAGGTTTGTGCAGCATTATAACTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGTACTTGATCCACTCTGACTTAAGGTTTGTGCAGCATTATAACTAT  350

seq1  AGATCTATTTTCATTCTTTCATTTTCATTCAGGTAGACATTCAGTTAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTATTTTCATTCTTTCATTTTCATTCAGGTAGACATTCAGTTAGAC  400

seq1  CAGCACCATTGGTTAAAGATGCTTTCTTTTTTCCATTGTATGGTTTTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACCATTGGTTAAAGATGCTTTCTTTTTTCCATTGTATGGTTTTGAC  450

seq1  TTCTTTATGAAAAATCAAATGTCCATAAGTGTATGGGTTTATTTCTGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTATGAAAAATCAAATGTCCATAAGTGTATGGGTTTATTTCTGGGT  500

seq1  TGAAGAGGATACTGTTAATTTGGAAATTTCTGTGACAAGCAAACAATAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGGATACTGTTAATTTGGAAATTTCTGTGACAAGCAAACAATAAA  550

seq1  GTTGATGAGTGTGTGCAAAGATGACAGCCAAAATGACAAGTCACTTTAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATGAGTGTGTGCAAAGATGACAGCCAAAATGACAAGTCACTTTAGA  600

seq1  AAAATTCTGAGAGATTACAAAAAACAAACAAACAAAAAACTAGATCTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCTGAGAGATTACAAAAAACAAACAAACAAAAAACTAGATCTGAT  650

seq1  CAGAAGTACCAAATATGGTGCAAGACTACAATTTTCTGCTTAAGTGTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTACCAAATATGGTGCAAGACTACAATTTTCTGCTTAAGTGTGTG  700

seq1  TGACTTACCTCAACAGAAGATAGCCT-GGACAGTGTGAAATCCTGAGGGG  749
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGACTTACCTCAACAGAAGATAGCCTGGGACAGTGTGAAATCCTGAGGGG  750

seq1  ATAAAAATACTCATTAAAGAAAATCAACAACATAATAAGAACAAGCAAAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAATACTCATTAAAGAAAATCAACAACATAATAAGAACAAGCAAAC  800

seq1  ACC-TTAAGCAAAACCTTTGC-AATGAAACATGCAAATTGTATCTAAACA  847
      ||| |||||| |||||||||| ||||||||||||||||||||||||||||
seq2  ACCTTTAAGC-AAACCTTTGCAAATGAAACATGCAAATTGTATCTAAACA  849

seq1  CATTAAAAGATTCCCCTACCTCTTCACGTTCTTTGCTTTGACAATGTTTT  897
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CATTAAAAGATTCCCCTACCTCTTCACGTTCTTTGCTTTGACAATG-TTT  898

seq1  GTTTTGTTTTTTAAATCACTGCATATGTGATATTGAG-TTACCTAAGGAA  946
      |||||| |||||||||||||||||||||||||||||| |||||||| |||
seq2  GTTTTG-TTTTTAAATCACTGCATATGTGATATTGAGTTTACCTAA-GAA  946

seq1  ATTTTCAGGCAAATAGATA-TTGTTTGTT  974
      || |||  || |||||||| |||||||||
seq2  ATCTTCCAGCCAATAGATATTTGTTTGTT  975


seq1: chr17_68547729_68547970
seq2: B6Ng01-199O16.g_70_311 (reverse)

seq1  CACACACACACACACACACACACACCACACACAAACACACAAGTGCGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACCACACACAAACACACAAGTGCGTGT  50

seq1  ATATAACCTCCTCAATTATCAAGCCATATCACACGCCTTAGGGATGCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAACCTCCTCAATTATCAAGCCATATCACACGCCTTAGGGATGCTGA  100

seq1  ATGTCATATAGAGTTAGTTCTGGCAAGAATATTGCTGTCCTATTCAACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCATATAGAGTTAGTTCTGGCAAGAATATTGCTGTCCTATTCAACAC  150

seq1  CAACCAAACCAAATGATCGTCATACTGACCTCCCAAGACAGAAATGATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAAACCAAATGATCGTCATACTGACCTCCCAAGACAGAAATGATTG  200

seq1  TTTCCATACCTTGCAAACAAATTAACAAATATACCTATCTAA  242
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATACCTTGCAAACAAATTAACAAATATACCTATCTAA  242


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