BAC Information

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BAC

Clone NameB6Ng01-200F15
Chromosome17 (Build37)
Map Location 4,955,873 - 5,055,288
singlet/doubletdoublet
Overlap geneArid1b
Upstream gene4930470H14Rik, Ppia-ps17_26.1
Downstream gene5730437N04Rik, Ldhal6b, LOC100040282, LOC666919, LOC100040312, Zdhhc14, 3300005D01Rik, LOC100040342, LOC100040352, Snx9, LOC666951, Synj2, Serac1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200F15.bB6Ng01-200F15.g
ACCGA021438GA021439
length1,0881,154
definitionB6Ng01-200F15.b B6Ng01-200F15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,955,873 - 4,956,942)(5,054,147 - 5,055,288)
sequence
gaattcaggtcctctggaagaccagtccatgcttctaacctctgagccat
ctctctaaggccccatttttattttttaagacttatttttatgtaagtgc
atgcgtatatatgacatgtgtgtgccagtgcccactgaagccagaagagg
gcatgaaatcctctgcagccaaggtatgggcagttgtaagccagacaaat
gagtgctggaaaccaaacttgagtcccctagaaggtcagcaagtgctctt
aactgctgagccatctctccagccactttctaccttgtcctttagagaga
cgggtctctccccagggtctggttgattgagcagcgagccacagagatct
gcctgtttctgattcaccagtactgaatcacaggcaagttcactaccact
cccggtattcttcaacagttctgaggatcaaggtcttcatgcttttgtgg
caaatgctctgctagccaagccgcatctccagcctcagatgttgttttcg
atagctacttataaagatacctgacaaggcattgtctccaaagctgcctc
tactttaggatcatagccaaagaggcacccagcattcccagtgtttacag
aatagaaatgcaaactggaacaatgaagagtagaaaaggcaaagagttgg
tctcaaagcgcactgctcctaagctctcccgggaaccgcatactgaactc
ctgcactgcatcagagttcaaatctttcaaagtcctgacttgaaacctct
ataactatcaaaatcgaaatgccattttaaagaaagccaaaggaagggtc
cagagatctacagtgagtcctctgtcccctgtctccagctctttgtggaa
gctggcttcaggatgacaggatgctgggccacgcttggagtttgtctgtt
ataactttttaacacctttggttgagggaagcacataaggctcctgtctg
caatgtctgtggcttattggaacagtttgtacttaattcatattaccagc
atccttgtcttgggatgagaataaatgtaatagaataattcttacagtta
ttggaagaagcacatggtttagccccctttccaaatcg

gaattctctgcttgactgtcatagaggcaccatggctctctgacgcaggc
ccagttcaacatcatttctcaggtggaagaaaatgaggtcaatagaagcc
atgtgttacttttgaaatgtcctctgaggaaaacaactttaacagacgca
catttctgatctgtggaggtgggattttctctactctggaacctagtgct
gcttctaaatgtggaaggacagtatctcgtcttaaaaatataaatagaat
aaatttaactttactcaactgagttattgagatcaattttagatgatttc
ccccaccccggcttactccctgagctgatgcaggaaagcaccagaccagg
atacaaatgaaaggggaacatggggaaggagggcgagactcagaaaccgg
tgcagaagtctgtaagaaaaaagaacggaaaagacaagaaaagaaaagcc
taaaaacctttaaaggctgatgaaacttgaaacagcttgcttctcacgca
gacctagaacaagcctctctgacaagaccagggtctaatgggacctattc
ttagaccatgtgcccatgcagtagctgctcccagggcacagtcactaact
gcacccaacaccagcgcattgcactcaggtgcataggtgcaggtctgttc
ctctaagggtgcctgtagctcctccacattaccaataaatatctggtgat
aactgtgttaacaagcctcaaagacctcaatactttctcaatctaatgag
ccaaaagtaacaccgtattgatagtaacaggagacagtaggagggtccac
cttcatgtgtgcaaactaacacctcccagggcccctgcctacccaaccaa
gtgagtgtcttggccctcttaggcaactcagtgggagagcaggaccacac
ctgtgctcactctcacaactcagtttctctcatttctttgcctcaccccc
tttcagagtctcccttctggaggttcttcttgggattcccagtgactggt
ggggaggatcacattagcacacattcaaccccacattgttaactaaagca
ggtaaatttcattctaaagtgtgactgtttatacaggggaaatccacttt
aggtcaaatattgattttctctacttcaggcacaaactggaggaagctgg
tctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_4955873_4956942
seq2: B6Ng01-200F15.b_50_1137

seq1  GAATTCAGGTCCTCTGGAAGACCAGTCCATGCTTCTAACCTCTGAGCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTCCTCTGGAAGACCAGTCCATGCTTCTAACCTCTGAGCCAT  50

seq1  CTCTCTAAGGCCCCATTTTTATTTTTTAAGACTTATTTTTATGTAAGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTAAGGCCCCATTTTTATTTTTTAAGACTTATTTTTATGTAAGTGC  100

seq1  ATGCGTATATATGACATGTGTGTGCCAGTGCCCACTGAAGCCAGAAGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGTATATATGACATGTGTGTGCCAGTGCCCACTGAAGCCAGAAGAGG  150

seq1  GCATGAAATCCTCTGCAGCCAAGGTATGGGCAGTTGTAAGCCAGACAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGAAATCCTCTGCAGCCAAGGTATGGGCAGTTGTAAGCCAGACAAAT  200

seq1  GAGTGCTGGAAACCAAACTTGAGTCCCCTAGAAGGTCAGCAAGTGCTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCTGGAAACCAAACTTGAGTCCCCTAGAAGGTCAGCAAGTGCTCTT  250

seq1  AACTGCTGAGCCATCTCTCCAGCCACTTTCTACCTTGTCCTTTAGAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTGAGCCATCTCTCCAGCCACTTTCTACCTTGTCCTTTAGAGAGA  300

seq1  CGGGTCTCTCCCCAGGGTCTGGTTGATTGAGCAGCGAGCCACAGAGATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTCTCTCCCCAGGGTCTGGTTGATTGAGCAGCGAGCCACAGAGATCT  350

seq1  GCCTGTTTCTGATTCACCAGTACTGAATCACAGGCAAGTTCACTACCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTTTCTGATTCACCAGTACTGAATCACAGGCAAGTTCACTACCACT  400

seq1  CCCGGTATTCTTCAACAGTTCTGAGGATCAAGGTCTTCATGCTTTTGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGTATTCTTCAACAGTTCTGAGGATCAAGGTCTTCATGCTTTTGTGG  450

seq1  CAAATGCTCTGCTAGCCAAGCCGCATCTCCAGCCTCAGATGTTGTTTTCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGCTCTGCTAGCCAAGCCGCATCTCCAGCCTCAGATGTTGTTTTCG  500

seq1  ATAGCTACTTATAAAGATACCTGACAAGGCATTGTCTCCAAAGCTGCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTACTTATAAAGATACCTGACAAGGCATTGTCTCCAAAGCTGCCTC  550

seq1  TACTTTAGGATCATAGCCAAAGAGGCACCCAGCATTCCCAGTGTTTACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTAGGATCATAGCCAAAGAGGCACCCAGCATTCCCAGTGTTTACAG  600

seq1  AATAGAAATGCAAACTGGAACAATGAAGAGTAGAAAAGGCAAAGAGTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAATGCAAACTGGAACAATGAAGAGTAGAAAAGGCAAAGAGTTGG  650

seq1  TCTCAAAGCGCACTGCTCCTAAGCTCTCCCGGGAACCGCATACTGAACTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAAGCGCACTGCTCCTAAGCTCTCCCGGGAACCGCATACTGAACTC  700

seq1  CTGCACTGCATCAGAGTTCAAATCTTTCAAAGTCCTGACTTGAAACCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACTGCATCAGAGTTCAAATCTTTCAAAGTCCTGACTTGAAACCTCT  750

seq1  ATAACTATCAAAATCGAAATGCCA-TTTAAAGAAAGCCAAAGGAAGGGTC  799
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATAACTATCAAAATCGAAATGCCATTTTAAAGAAAGCCAAAGGAAGGGTC  800

seq1  CAGAGATCTACAGTGAGTCCTCTGTCCCCTGTCTCCAGCTCTTTGTGGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATCTACAGTGAGTCCTCTGTCCCCTGTCTCCAGCTCTTTGTGGAA  850

seq1  GCTGGCTTCAGGATGACAGGATGCTGGGCCACGCTTGGAGTTTGTCTGTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCTTCAGGATGACAGGATGCTGGGCCACGCTTGGAGTTTGTCTGTT  900

seq1  ATAAC-TTTTAACA-CTTTGGTTGAGGGAAGCACAT-AGGCTCCTGTCTG  946
      ||||| |||||||| ||||||||||||||||||||| |||||||||||||
seq2  ATAACTTTTTAACACCTTTGGTTGAGGGAAGCACATAAGGCTCCTGTCTG  950

seq1  CAATGTCTGTTGCT--ATGGAACAGTTTGTACTTAA-TCATATTA-CAGC  992
      |||||||||| |||   ||||||||||||||||||| |||||||| ||||
seq2  CAATGTCTGTGGCTTATTGGAACAGTTTGTACTTAATTCATATTACCAGC  1000

seq1  ATCC-TGTC-TGGGATGAGAAT-AATGT-ATAGAAT-ATTC-TACAGCTA  1036
      |||| |||| |||||||||||| ||||| ||||||| |||| ||||| ||
seq2  ATCCTTGTCTTGGGATGAGAATAAATGTAATAGAATAATTCTTACAGTTA  1050

seq1  TTGG-AGAAG--CATTGTTTAG-CCCCTTTCCAAATCG  1070
      |||| |||||  ||| |||||| |||||||||||||||
seq2  TTGGAAGAAGCACATGGTTTAGCCCCCTTTCCAAATCG  1088


seq1: chr17_5054147_5055288
seq2: B6Ng01-200F15.g_68_1221 (reverse)

seq1  AAGACCAGGCTCTCTCAGTTTGTGCTTGGAGTAGAG-AAATCAATTATTT  49
      ||||||||  ||   |||||||||| || ||||||| ||||||| |||||
seq2  AAGACCAGCTTCCTCCAGTTTGTGCCTGAAGTAGAGAAAATCAA-TATTT  49

seq1  GAACTAAAGT-GATT--CCCTGTATAAACAGTTCACACTTTAAGATG-AA  95
      || ||||||| ||||  |||||||||||||| ||||||||||  ||| ||
seq2  GACCTAAAGTGGATTTCCCCTGTATAAACAG-TCACACTTTAGAATGAAA  98

seq1  TTTACTTGCTTTTAGTTTAACATGT-GGGTTGAATGTGTGCT-ATGTGAT  143
      ||||| ||| ||||||| |  |||| |||||||||||||||| |||||||
seq2  TTTACCTGC-TTTAGTTAACAATGTGGGGTTGAATGTGTGCTAATGTGAT  147

seq1  C--TCCCACCAGTCACTGGGAATCCCAAG-AGAACCT-CAGAAGGGAGAC  189
      |   ||||||||||||||||||||||||| ||||||| ||||||||||||
seq2  CCTCCCCACCAGTCACTGGGAATCCCAAGAAGAACCTCCAGAAGGGAGAC  197

seq1  TCTGAA--GGGGTGAGGCAAAG-AATGAGAGAAACTGAGTTGTGAGAGTG  236
      ||||||  |||||||||||||| |||||||||||||||||||||||||||
seq2  TCTGAAAGGGGGTGAGGCAAAGAAATGAGAGAAACTGAGTTGTGAGAGTG  247

seq1  AGCACAGGTGTGGTCCTGCTCTCCCACTGAGTTGCCTAAGAGGGCC-AGA  285
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AGCACAGGTGTGGTCCTGCTCTCCCACTGAGTTGCCTAAGAGGGCCAAGA  297

seq1  CACTCACTTGGTTGGGTAGGCAGGGGCCCTGGGAGGTGTTAGTTTGCACA  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCACTTGGTTGGGTAGGCAGGGGCCCTGGGAGGTGTTAGTTTGCACA  347

seq1  CATGAAGGTGGACCCTCCTACTGTCTCCTGTTACTATCAATACGGTGTTA  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGGTGGACCCTCCTACTGTCTCCTGTTACTATCAATACGGTGTTA  397

seq1  CTTTTGGCTCATTAGATTGAGAAAGTATTGAGGTCTTTGAGGCTTGTTAA  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGCTCATTAGATTGAGAAAGTATTGAGGTCTTTGAGGCTTGTTAA  447

seq1  CACAGTTATCACCAGATATTTATTGGTAATGTGGAGGAGCTACAGGCACC  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTTATCACCAGATATTTATTGGTAATGTGGAGGAGCTACAGGCACC  497

seq1  CTTAGAGGAACAGACCTGCACCTATGCACCTGAGTGCAATGCGCTGGTGT  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAGGAACAGACCTGCACCTATGCACCTGAGTGCAATGCGCTGGTGT  547

seq1  TGGGTGCAGTTAGTGACTGTGCCCTGGGAGCAGCTACTGCATGGGCACAT  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGCAGTTAGTGACTGTGCCCTGGGAGCAGCTACTGCATGGGCACAT  597

seq1  GGTCTAAGAATAGGTCCCATTAGACCCTGGTCTTGTCAGAGAGGCTTGTT  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTAAGAATAGGTCCCATTAGACCCTGGTCTTGTCAGAGAGGCTTGTT  647

seq1  CTAGGTCTGCGTGAGAAGCAAGCTGTTTCAAGTTTCATCAGCCTTTAAAG  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTCTGCGTGAGAAGCAAGCTGTTTCAAGTTTCATCAGCCTTTAAAG  697

seq1  GTTTTTAGGCTTTTCTTTTCTTGTCTTTTCCGTTCTTTTTTCTTACAGAC  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTAGGCTTTTCTTTTCTTGTCTTTTCCGTTCTTTTTTCTTACAGAC  747

seq1  TTCTGCACCGGTTTCTGAGTCTCGCCCTCCTTCCCCATGTTCCCCTTTCA  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCACCGGTTTCTGAGTCTCGCCCTCCTTCCCCATGTTCCCCTTTCA  797

seq1  TTTGTATCCTGGTCTGGTGCTTTCCTGCATCAGCTCAGGGAGTAAGCCGG  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATCCTGGTCTGGTGCTTTCCTGCATCAGCTCAGGGAGTAAGCCGG  847

seq1  GGTGGGGGAAATCATCTAAAATTGATCTCAATAACTCAGTTGAGTAAAGT  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGGGAAATCATCTAAAATTGATCTCAATAACTCAGTTGAGTAAAGT  897

seq1  TAAATTTATTCTATTTATATTTTTAAGACGAGATACTGTCCTTCCACATT  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTATTCTATTTATATTTTTAAGACGAGATACTGTCCTTCCACATT  947

seq1  TAGAAGCAGCACTAGGTTCCAGAGTAGAGAAAATCCCACCTCCACAGATC  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGCAGCACTAGGTTCCAGAGTAGAGAAAATCCCACCTCCACAGATC  997

seq1  AGAAATGTGCGTCTGTTAAAGTTGTTTTCCTCAGAGGACATTTCAAAAGT  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGTGCGTCTGTTAAAGTTGTTTTCCTCAGAGGACATTTCAAAAGT  1047

seq1  AACACATGGCTTCTATTGACCTCATTTTCTTCCACCTGAGAAATGATGTT  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATGGCTTCTATTGACCTCATTTTCTTCCACCTGAGAAATGATGTT  1097

seq1  GAACTGGGCCTGCGTCAGAGAGCCATGGTGCCTCTATGACAGTCAAGCAG  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGGGCCTGCGTCAGAGAGCCATGGTGCCTCTATGACAGTCAAGCAG  1147

seq1  AGAATTC  1142
      |||||||
seq2  AGAATTC  1154


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